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MS023343 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS023343
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Description50S ribosomal protein L20, chloroplastic
Genome locationscaffold378:208712..208879
RNA-Seq ExpressionMS023343
SyntenyMS023343
Gene Ontology termsGO:0000027 - ribosomal large subunit assembly (biological process)
GO:0006412 - translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0009507 - chloroplast (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0019843 - rRNA binding (molecular function)
InterPro domainsIPR005813 - Ribosomal protein L20
IPR035566 - Ribosomal protein L20, C-terminal


Homology Show/hide homology
GenBank top hitse value%identityAlignment
YP_009456084.1 ribosomal protein L20 [Momordica charantia]6.3e-1092.31Show/hide
Query:  SRTITQPKIRALASAYWDRGRQKRNFRHLWIARINAVIR
        +RTITQ KIRALASAY DRGRQKRNFRHLWIARINAVIR
Subjt:  SRTITQPKIRALASAYWDRGRQKRNFRHLWIARINAVIR
YP_009674414.1 ribosomal protein L20 [Siraitia grosvenorii]6.3e-1092.31Show/hide
Query:  SRTITQPKIRALASAYWDRGRQKRNFRHLWIARINAVIR
        +RTITQ KIRALASAY DRGRQKRNFRHLWIARINAVIR
Subjt:  SRTITQPKIRALASAYWDRGRQKRNFRHLWIARINAVIR
YP_009751508.1 ribosomal protein L20 [Thladiantha dubia]6.3e-1092.31Show/hide
Query:  SRTITQPKIRALASAYWDRGRQKRNFRHLWIARINAVIR
        +RTITQ KIRALASAY DRGRQKRNFRHLWIARINAVIR
Subjt:  SRTITQPKIRALASAYWDRGRQKRNFRHLWIARINAVIR
YP_009752689.1 ribosomal protein L20 [Ampelosycios humblotii]6.3e-1092.31Show/hide
Query:  SRTITQPKIRALASAYWDRGRQKRNFRHLWIARINAVIR
        +RTITQ KIRALASAY DRGRQKRNFRHLWIARINAVIR
Subjt:  SRTITQPKIRALASAYWDRGRQKRNFRHLWIARINAVIR
YP_009752858.1 ribosomal protein L20 [Baijiania yunnanensis]2.8e-1076Show/hide
Query:  SRTITQPKIRALASAYWDRGRQKRNFRHLWIARINAVIRKRDFKFFFFFS
        +RTITQ KIRALASAY DRGRQKRNFRHLWIARINAVIR  + K ++ +S
Subjt:  SRTITQPKIRALASAYWDRGRQKRNFRHLWIARINAVIRKRDFKFFFFFS
TrEMBL top hitse value%identityAlignment
A0A2I6C027 50S ribosomal protein L20, chloroplastic3.0e-1092.31Show/hide
Query:  SRTITQPKIRALASAYWDRGRQKRNFRHLWIARINAVIR
        +RTITQ KIRALASAY DRGRQKRNFRHLWIARINAVIR
Subjt:  SRTITQPKIRALASAYWDRGRQKRNFRHLWIARINAVIR
A0A514YKV6 50S ribosomal protein L20, chloroplastic3.0e-1092.31Show/hide
Query:  SRTITQPKIRALASAYWDRGRQKRNFRHLWIARINAVIR
        +RTITQ KIRALASAY DRGRQKRNFRHLWIARINAVIR
Subjt:  SRTITQPKIRALASAYWDRGRQKRNFRHLWIARINAVIR
A0A6C0U950 50S ribosomal protein L20, chloroplastic3.0e-1092.31Show/hide
Query:  SRTITQPKIRALASAYWDRGRQKRNFRHLWIARINAVIR
        +RTITQ KIRALASAY DRGRQKRNFRHLWIARINAVIR
Subjt:  SRTITQPKIRALASAYWDRGRQKRNFRHLWIARINAVIR
A0A6H0ET10 50S ribosomal protein L20, chloroplastic3.0e-1092.31Show/hide
Query:  SRTITQPKIRALASAYWDRGRQKRNFRHLWIARINAVIR
        +RTITQ KIRALASAY DRGRQKRNFRHLWIARINAVIR
Subjt:  SRTITQPKIRALASAYWDRGRQKRNFRHLWIARINAVIR
A0A6H0EV93 50S ribosomal protein L20, chloroplastic1.4e-1076Show/hide
Query:  SRTITQPKIRALASAYWDRGRQKRNFRHLWIARINAVIRKRDFKFFFFFS
        +RTITQ KIRALASAY DRGRQKRNFRHLWIARINAVIR  + K ++ +S
Subjt:  SRTITQPKIRALASAYWDRGRQKRNFRHLWIARINAVIRKRDFKFFFFFS
SwissProt top hitse value%identityAlignment
A9L9B9 50S ribosomal protein L20, chloroplastic1.4e-0963.83Show/hide
Query:  SRTITQPKIRALASAYWDRGRQKRNFRHLWIARINAVIRKRDFKFFF
        +RTITQ K+RAL SAY DRGRQKR+FR LWI RINAV R+ +  + +
Subjt:  SRTITQPKIRALASAYWDRGRQKRNFRHLWIARINAVIRKRDFKFFF
P49162 50S ribosomal protein L20, plastid2.5e-0968.09Show/hide
Query:  SRTITQPKIRALASAYWDRGRQKRNFRHLWIARINAVIRKRDFKFFF
        +RTITQ KIRAL SA+ DR +QK NFR LWIARINAVIRKR   + +
Subjt:  SRTITQPKIRALASAYWDRGRQKRNFRHLWIARINAVIRKRDFKFFF
Q09WZ4 50S ribosomal protein L20, chloroplastic3.2e-0966Show/hide
Query:  SRTITQPKIRALASAYWDRGRQKRNFRHLWIARINAVIRKRDFKFFFFFS
        +RTITQ KIRAL SA+ DRGRQKR+FR LWI RINAVIR    K ++ +S
Subjt:  SRTITQPKIRALASAYWDRGRQKRNFRHLWIARINAVIRKRDFKFFFFFS
Q4VZJ4 50S ribosomal protein L20, chloroplastic1.2e-1174.47Show/hide
Query:  SRTITQPKIRALASAYWDRGRQKRNFRHLWIARINAVIRKRDFKFFF
        +RTITQ KIRALASAY DRGRQKRNFR LWIARINAVIR  +  + +
Subjt:  SRTITQPKIRALASAYWDRGRQKRNFRHLWIARINAVIRKRDFKFFF
Q68RY3 50S ribosomal protein L20, chloroplastic2.5e-0975Show/hide
Query:  SRTITQPKIRALASAYWDRGRQKRNFRHLWIARINAVIRK
        +RTITQ KIRAL S++ DR RQKRNFR LWI RINAVIR+
Subjt:  SRTITQPKIRALASAYWDRGRQKRNFRHLWIARINAVIRK
Arabidopsis top hitse value%identityAlignment
ATCG00660.1 ribosomal protein L205.6e-0965Show/hide
Query:  SRTITQPKIRALASAYWDRGRQKRNFRHLWIARINAVIRK
        +RT+TQ +IRAL SA+ DRG++KR+FR LWI RINAVI +
Subjt:  SRTITQPKIRALASAYWDRGRQKRNFRHLWIARINAVIRK

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TCTCGAACTATTACTCAACCGAAAATAAGAGCTTTGGCTTCAGCTTATTGGGATAGAGGTAGGCAAAAAAGAAATTTTCGACATTTGTGGATCGCTCGAATAAATGCAGT
AATTCGAAAACGAGATTTCAAGTTTTTTTTTTTTTTTTCCTTTTGTTTTTCAAACCAA
mRNA sequenceShow/hide mRNA sequence
TCTCGAACTATTACTCAACCGAAAATAAGAGCTTTGGCTTCAGCTTATTGGGATAGAGGTAGGCAAAAAAGAAATTTTCGACATTTGTGGATCGCTCGAATAAATGCAGT
AATTCGAAAACGAGATTTCAAGTTTTTTTTTTTTTTTTCCTTTTGTTTTTCAAACCAA
Protein sequenceShow/hide protein sequence
SRTITQPKIRALASAYWDRGRQKRNFRHLWIARINAVIRKRDFKFFFFFSFCFSNQ