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MS023354 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS023354
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationscaffold378:288376..288803
RNA-Seq ExpressionMS023354
SyntenyMS023354
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0051276 - chromosome organization (biological process)
GO:0003824 - catalytic activity (molecular function)
GO:0097159 - organic cyclic compound binding (molecular function)
GO:1901363 - heterocyclic compound binding (molecular function)
InterPro domainsIPR000477 - Reverse transcriptase domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
BBN69746.1 VIRB2-interacting protein 2 [Prunus dulcis]4.7e-3049.64Show/hide
Query:  LYKIIARVLSKRLKRVLPYTFTRYQSAFVEGSQVLYVSLIVDKLIEDWTRRKLNGVVIKLDVDKAFDKVDEYFTDEILKVKGFGTEWRNWVRGCISSSNF
        LYK++++VL+ RL+ VL  T + YQSAFV+G Q+L  +LI ++++E+  R   +G+V K+D++KA+D V+  F DE+L  KGFG  WR+W+RGC+ ++NF
Subjt:  LYKIIARVLSKRLKRVLPYTFTRYQSAFVEGSQVLYVSLIVDKLIEDWTRRKLNGVVIKLDVDKAFDKVDEYFTDEILKVKGFGTEWRNWVRGCISSSNF

Query:  SI-INGKSKGKTFAARDLRQGDP-SSFLFILVANCLSQL
        S+ ING+ +GK  A+R LRQGDP S FLF LV + LS++
Subjt:  SI-INGKSKGKTFAARDLRQGDP-SSFLFILVANCLSQL
VVA13439.1 Hypothetical predicted protein, partial [Prunus dulcis]4.7e-3049.64Show/hide
Query:  LYKIIARVLSKRLKRVLPYTFTRYQSAFVEGSQVLYVSLIVDKLIEDWTRRKLNGVVIKLDVDKAFDKVDEYFTDEILKVKGFGTEWRNWVRGCISSSNF
        LYK++++VL+ RL+ VL  T + YQSAFV+G Q+L  +LI ++++E+  R   +G+V K+D++KA+D V+  F DE+L  KGFG  WR+W+RGC+ ++NF
Subjt:  LYKIIARVLSKRLKRVLPYTFTRYQSAFVEGSQVLYVSLIVDKLIEDWTRRKLNGVVIKLDVDKAFDKVDEYFTDEILKVKGFGTEWRNWVRGCISSSNF

Query:  SI-INGKSKGKTFAARDLRQGDP-SSFLFILVANCLSQL
        S+ ING+ +GK  A+R LRQGDP S FLF LV + LS++
Subjt:  SI-INGKSKGKTFAARDLRQGDP-SSFLFILVANCLSQL
VVA21938.1 Hypothetical predicted protein, partial [Prunus dulcis]4.7e-3049.64Show/hide
Query:  LYKIIARVLSKRLKRVLPYTFTRYQSAFVEGSQVLYVSLIVDKLIEDWTRRKLNGVVIKLDVDKAFDKVDEYFTDEILKVKGFGTEWRNWVRGCISSSNF
        LYK++++VL+ RL+ VL  T + YQSAFV+G Q+L  +LI ++++E+  R   +G+V K+D++KA+D V+  F DE+L  KGFG  WR+W+RGC+ ++NF
Subjt:  LYKIIARVLSKRLKRVLPYTFTRYQSAFVEGSQVLYVSLIVDKLIEDWTRRKLNGVVIKLDVDKAFDKVDEYFTDEILKVKGFGTEWRNWVRGCISSSNF

Query:  SI-INGKSKGKTFAARDLRQGDP-SSFLFILVANCLSQL
        S+ ING+ +GK  A+R LRQGDP S FLF LV + LS++
Subjt:  SI-INGKSKGKTFAARDLRQGDP-SSFLFILVANCLSQL
VVA25489.1 Hypothetical predicted protein, partial [Prunus dulcis]4.7e-3049.64Show/hide
Query:  LYKIIARVLSKRLKRVLPYTFTRYQSAFVEGSQVLYVSLIVDKLIEDWTRRKLNGVVIKLDVDKAFDKVDEYFTDEILKVKGFGTEWRNWVRGCISSSNF
        LYK++++VL+ RL+ VL  T + YQSAFV+G Q+L  +LI ++++E+  R   +G+V K+D++KA+D V+  F DE+L  KGFG  WR+W+RGC+ ++NF
Subjt:  LYKIIARVLSKRLKRVLPYTFTRYQSAFVEGSQVLYVSLIVDKLIEDWTRRKLNGVVIKLDVDKAFDKVDEYFTDEILKVKGFGTEWRNWVRGCISSSNF

Query:  SI-INGKSKGKTFAARDLRQGDP-SSFLFILVANCLSQL
        S+ ING+ +GK  A+R LRQGDP S FLF LV + LS++
Subjt:  SI-INGKSKGKTFAARDLRQGDP-SSFLFILVANCLSQL
VVA39726.1 Hypothetical predicted protein, partial [Prunus dulcis]4.7e-3049.64Show/hide
Query:  LYKIIARVLSKRLKRVLPYTFTRYQSAFVEGSQVLYVSLIVDKLIEDWTRRKLNGVVIKLDVDKAFDKVDEYFTDEILKVKGFGTEWRNWVRGCISSSNF
        LYK++++VL+ RL+ VL  T + YQSAFV+G Q+L  +LI ++++E+  R   +G+V K+D++KA+D V+  F DE+L  KGFG  WR+W+RGC+ ++NF
Subjt:  LYKIIARVLSKRLKRVLPYTFTRYQSAFVEGSQVLYVSLIVDKLIEDWTRRKLNGVVIKLDVDKAFDKVDEYFTDEILKVKGFGTEWRNWVRGCISSSNF

Query:  SI-INGKSKGKTFAARDLRQGDP-SSFLFILVANCLSQL
        S+ ING+ +GK  A+R LRQGDP S FLF LV + LS++
Subjt:  SI-INGKSKGKTFAARDLRQGDP-SSFLFILVANCLSQL
TrEMBL top hitse value%identityAlignment
A0A4Y1R3V4 VIRB2-interacting protein 22.3e-3049.64Show/hide
Query:  LYKIIARVLSKRLKRVLPYTFTRYQSAFVEGSQVLYVSLIVDKLIEDWTRRKLNGVVIKLDVDKAFDKVDEYFTDEILKVKGFGTEWRNWVRGCISSSNF
        LYK++++VL+ RL+ VL  T + YQSAFV+G Q+L  +LI ++++E+  R   +G+V K+D++KA+D V+  F DE+L  KGFG  WR+W+RGC+ ++NF
Subjt:  LYKIIARVLSKRLKRVLPYTFTRYQSAFVEGSQVLYVSLIVDKLIEDWTRRKLNGVVIKLDVDKAFDKVDEYFTDEILKVKGFGTEWRNWVRGCISSSNF

Query:  SI-INGKSKGKTFAARDLRQGDP-SSFLFILVANCLSQL
        S+ ING+ +GK  A+R LRQGDP S FLF LV + LS++
Subjt:  SI-INGKSKGKTFAARDLRQGDP-SSFLFILVANCLSQL
A0A5E4FED8 Reverse transcriptase domain-containing protein (Fragment)2.3e-3049.64Show/hide
Query:  LYKIIARVLSKRLKRVLPYTFTRYQSAFVEGSQVLYVSLIVDKLIEDWTRRKLNGVVIKLDVDKAFDKVDEYFTDEILKVKGFGTEWRNWVRGCISSSNF
        LYK++++VL+ RL+ VL  T + YQSAFV+G Q+L  +LI ++++E+  R   +G+V K+D++KA+D V+  F DE+L  KGFG  WR+W+RGC+ ++NF
Subjt:  LYKIIARVLSKRLKRVLPYTFTRYQSAFVEGSQVLYVSLIVDKLIEDWTRRKLNGVVIKLDVDKAFDKVDEYFTDEILKVKGFGTEWRNWVRGCISSSNF

Query:  SI-INGKSKGKTFAARDLRQGDP-SSFLFILVANCLSQL
        S+ ING+ +GK  A+R LRQGDP S FLF LV + LS++
Subjt:  SI-INGKSKGKTFAARDLRQGDP-SSFLFILVANCLSQL
A0A5E4GJ11 Reverse transcriptase domain-containing protein (Fragment)2.3e-3049.64Show/hide
Query:  LYKIIARVLSKRLKRVLPYTFTRYQSAFVEGSQVLYVSLIVDKLIEDWTRRKLNGVVIKLDVDKAFDKVDEYFTDEILKVKGFGTEWRNWVRGCISSSNF
        LYK++++VL+ RL+ VL  T + YQSAFV+G Q+L  +LI ++++E+  R   +G+V K+D++KA+D V+  F DE+L  KGFG  WR+W+RGC+ ++NF
Subjt:  LYKIIARVLSKRLKRVLPYTFTRYQSAFVEGSQVLYVSLIVDKLIEDWTRRKLNGVVIKLDVDKAFDKVDEYFTDEILKVKGFGTEWRNWVRGCISSSNF

Query:  SI-INGKSKGKTFAARDLRQGDP-SSFLFILVANCLSQL
        S+ ING+ +GK  A+R LRQGDP S FLF LV + LS++
Subjt:  SI-INGKSKGKTFAARDLRQGDP-SSFLFILVANCLSQL
A0A5H2XKI7 VIRB2-interacting protein 22.3e-3049.64Show/hide
Query:  LYKIIARVLSKRLKRVLPYTFTRYQSAFVEGSQVLYVSLIVDKLIEDWTRRKLNGVVIKLDVDKAFDKVDEYFTDEILKVKGFGTEWRNWVRGCISSSNF
        LYK++++VL+ RL+ VL  T + YQSAFV+G Q+L  +LI ++++E+  R   +G+V K+D++KA+D V+  F DE+L  KGFG  WR+W+RGC+ ++NF
Subjt:  LYKIIARVLSKRLKRVLPYTFTRYQSAFVEGSQVLYVSLIVDKLIEDWTRRKLNGVVIKLDVDKAFDKVDEYFTDEILKVKGFGTEWRNWVRGCISSSNF

Query:  SI-INGKSKGKTFAARDLRQGDP-SSFLFILVANCLSQL
        S+ ING+ +GK  A+R LRQGDP S FLF LV + LS++
Subjt:  SI-INGKSKGKTFAARDLRQGDP-SSFLFILVANCLSQL
M5XUF8 Reverse transcriptase domain-containing protein (Fragment)1.8e-3049.64Show/hide
Query:  LYKIIARVLSKRLKRVLPYTFTRYQSAFVEGSQVLYVSLIVDKLIEDWTRRKLNGVVIKLDVDKAFDKVDEYFTDEILKVKGFGTEWRNWVRGCISSSNF
        LYK++++VL+ RL+ VL  T + YQSAFV+G Q+L  +LI ++++E+  R   +G+V K+D++KA+D V+  F DE+L  KGFG  WR+W+RGC+ ++NF
Subjt:  LYKIIARVLSKRLKRVLPYTFTRYQSAFVEGSQVLYVSLIVDKLIEDWTRRKLNGVVIKLDVDKAFDKVDEYFTDEILKVKGFGTEWRNWVRGCISSSNF

Query:  SI-INGKSKGKTFAARDLRQGDP-SSFLFILVANCLSQL
        S+ ING+ +GK  A+R LRQGDP S FLF LV + LS++
Subjt:  SI-INGKSKGKTFAARDLRQGDP-SSFLFILVANCLSQL
SwissProt top hitse value%identityAlignment
P14381 Transposon TX1 uncharacterized 149 kDa protein5.0e-0629.84Show/hide
Query:  YKIIARVLSKRLKRVLPYTFTRYQSAFVEGSQVLYVSLIVDKLIEDWTRRKLNGVVIKLDVDKAFDKVDEYFTDEILKVKGFGTEWRNWVRGCISSSNFS
        YKI+A+ +S RLK VL       QS  V G  +     ++  L+    R  L+   + LD +KAFD+VD  +    L+   FG ++  +++   +S+   
Subjt:  YKIIARVLSKRLKRVLPYTFTRYQSAFVEGSQVLYVSLIVDKLIEDWTRRKLNGVVIKLDVDKAFDKVDEYFTDEILKVKGFGTEWRNWVRGCISSSNFS

Query:  I-INGKSKGKTFAARDLRQGDPSS
        + IN          R +RQG P S
Subjt:  I-INGKSKGKTFAARDLRQGDPSS
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CTTTACAAGATCATTGCTAGAGTCTTATCAAAGAGGTTAAAAAGGGTGCTTCCCTACACATTTACTCGATATCAGTCGGCTTTTGTAGAGGGTAGCCAAGTATTGTATGT
TTCACTCATTGTTGACAAACTTATTGAAGATTGGACTAGAAGGAAATTGAATGGGGTGGTTATAAAGCTTGATGTTGACAAAGCTTTTGATAAAGTTGATGAATATTTCA
CAGATGAGATCTTGAAGGTTAAAGGGTTTGGAACCGAATGGAGAAATTGGGTTAGAGGTTGCATCTCTTCTTCAAATTTCTCCATCATCAATGGAAAATCGAAAGGCAAG
ACTTTTGCAGCTCGAGACCTTCGTCAAGGCGACCCCTCTTCTTTCCTCTTTATTTTAGTAGCCAATTGTCTTAGCCAGTTATTCTCTCATACCTCC
mRNA sequenceShow/hide mRNA sequence
CTTTACAAGATCATTGCTAGAGTCTTATCAAAGAGGTTAAAAAGGGTGCTTCCCTACACATTTACTCGATATCAGTCGGCTTTTGTAGAGGGTAGCCAAGTATTGTATGT
TTCACTCATTGTTGACAAACTTATTGAAGATTGGACTAGAAGGAAATTGAATGGGGTGGTTATAAAGCTTGATGTTGACAAAGCTTTTGATAAAGTTGATGAATATTTCA
CAGATGAGATCTTGAAGGTTAAAGGGTTTGGAACCGAATGGAGAAATTGGGTTAGAGGTTGCATCTCTTCTTCAAATTTCTCCATCATCAATGGAAAATCGAAAGGCAAG
ACTTTTGCAGCTCGAGACCTTCGTCAAGGCGACCCCTCTTCTTTCCTCTTTATTTTAGTAGCCAATTGTCTTAGCCAGTTATTCTCTCATACCTCC
Protein sequenceShow/hide protein sequence
LYKIIARVLSKRLKRVLPYTFTRYQSAFVEGSQVLYVSLIVDKLIEDWTRRKLNGVVIKLDVDKAFDKVDEYFTDEILKVKGFGTEWRNWVRGCISSSNFSIINGKSKGK
TFAARDLRQGDPSSFLFILVANCLSQLFSHTS