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MS023355 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS023355
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold378:289043..289506
RNA-Seq ExpressionMS023355
SyntenyMS023355
Gene Ontology termsGO:0003824 - catalytic activity (molecular function)
GO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
BBN69746.1 VIRB2-interacting protein 2 [Prunus dulcis]1.1e-3247.33Show/hide
Query:  GCKIGVWPNSYPG-PLIRNTKSPSFWQPITDKIERRLQAWNHMYTSKGGWVTLINSALVNLPNYYLSLFEIPTKYASTIERHFCSFIWSGNRQESSHLLK
        GC +GVWP  Y G PL  N ++  FW P+ +K+E RLQ W     SKGG +T+I + L ++P YY+SLF IP   A+ IE+    F+W G   +S+H + 
Subjt:  GCKIGVWPNSYPG-PLIRNTKSPSFWQPITDKIERRLQAWNHMYTSKGGWVTLINSALVNLPNYYLSLFEIPTKYASTIERHFCSFIWSGNRQESSHLLK

Query:  WDKVKKPWFEGRLGIIDLKLRNKSLRAKWLWRFHNEKCALWRKVILPKYG
        W+ V K  F G LG+  L+ R+ +LRAKWLWRF NE  ALW KVI   YG
Subjt:  WDKVKKPWFEGRLGIIDLKLRNKSLRAKWLWRFHNEKCALWRKVILPKYG

KAG7976272.1 hypothetical protein I3843_06G141300 [Carya illinoinensis]1.1e-3250Show/hide
Query:  CKIGVWPNSYPG-PLIRNTKSPSFWQPITDKIERRLQAWNHMYTSKGGWVTLINSALVNLPNYYLSLFEIPTKYASTIERHFCSFIWSGNRQE-SSHLLK
        CK+  +P +Y G PL    +SP  W+P+ +KIERRL +W  MY SKGG +TLI S L NLP Y+LSLF IP + AS IE+    F+W G  +E   HL+K
Subjt:  CKIGVWPNSYPG-PLIRNTKSPSFWQPITDKIERRLQAWNHMYTSKGGWVTLINSALVNLPNYYLSLFEIPTKYASTIERHFCSFIWSGNRQE-SSHLLK

Query:  WDKVKKPWFEGRLGIIDLKLRNKSLRAKWLWRFHNEKCALWRKVILPKYG
        W  V +P+ +G LGI ++K+ N++L  KWLWR+  E  ALWR VI  KYG
Subjt:  WDKVKKPWFEGRLGIIDLKLRNKSLRAKWLWRFHNEKCALWRKVILPKYG

VVA20721.1 Hypothetical predicted protein, partial [Prunus dulcis]8.5e-3347.33Show/hide
Query:  GCKIGVWPNSYPG-PLIRNTKSPSFWQPITDKIERRLQAWNHMYTSKGGWVTLINSALVNLPNYYLSLFEIPTKYASTIERHFCSFIWSGNRQESSHLLK
        GC++GVWP  Y G PL  N ++  FW P+ +K+E RLQ W     SKGG +T+I + L ++P YY+SLF IP   A+ IE     F+W G   +S+H + 
Subjt:  GCKIGVWPNSYPG-PLIRNTKSPSFWQPITDKIERRLQAWNHMYTSKGGWVTLINSALVNLPNYYLSLFEIPTKYASTIERHFCSFIWSGNRQESSHLLK

Query:  WDKVKKPWFEGRLGIIDLKLRNKSLRAKWLWRFHNEKCALWRKVILPKYG
        W+ V K  F G LG+  L+ R+ +LRAKWLWRF NE  ALW KVI   YG
Subjt:  WDKVKKPWFEGRLGIIDLKLRNKSLRAKWLWRFHNEKCALWRKVILPKYG

VVA21938.1 Hypothetical predicted protein, partial [Prunus dulcis]1.1e-3247.33Show/hide
Query:  GCKIGVWPNSYPG-PLIRNTKSPSFWQPITDKIERRLQAWNHMYTSKGGWVTLINSALVNLPNYYLSLFEIPTKYASTIERHFCSFIWSGNRQESSHLLK
        GC +GVWP  Y G PL  N ++  FW P+ +K+E RLQ W     SKGG +T+I + L ++P YY+SLF IP   A+ IE+    F+W G   +S+H + 
Subjt:  GCKIGVWPNSYPG-PLIRNTKSPSFWQPITDKIERRLQAWNHMYTSKGGWVTLINSALVNLPNYYLSLFEIPTKYASTIERHFCSFIWSGNRQESSHLLK

Query:  WDKVKKPWFEGRLGIIDLKLRNKSLRAKWLWRFHNEKCALWRKVILPKYG
        W+ V K  F G LG+  L+ R+ +LRAKWLWRF NE  ALW KVI   YG
Subjt:  WDKVKKPWFEGRLGIIDLKLRNKSLRAKWLWRFHNEKCALWRKVILPKYG

VVA30963.1 Hypothetical predicted protein, partial [Prunus dulcis]5.9e-3446.36Show/hide
Query:  GCKIGVWPNSYPG-PLIRNTKSPSFWQPITDKIERRLQAWNHMYTSKGGWVTLINSALVNLPNYYLSLFEIPTKYASTIERHFCSFIWSGNRQ-ESSHLL
        GC++G WP  Y G PL  N ++ +FW P+ DK+E+RLQ W     SKGG +TLI + L ++P+YY+SLF++PT  A+ +E+   +F+W G  + +  HL+
Subjt:  GCKIGVWPNSYPG-PLIRNTKSPSFWQPITDKIERRLQAWNHMYTSKGGWVTLINSALVNLPNYYLSLFEIPTKYASTIERHFCSFIWSGNRQ-ESSHLL

Query:  KWDKVKKPWFEGRLGIIDLKLRNKSLRAKWLWRFHNEKCALWRKVILPKYG
        +W++V K   EG LGI  L+ RN++LRAKWLWRF  E  +LW ++I  KYG
Subjt:  KWDKVKKPWFEGRLGIIDLKLRNKSLRAKWLWRFHNEKCALWRKVILPKYG

TrEMBL top hitse value%identityAlignment
A0A2N9GKX5 zf-RVT domain-containing protein1.8e-3349.35Show/hide
Query:  GCKIGVWPNSYPG-PLIRNTKSPSFWQPITDKIERRLQAWNHMYTSKGGWVTLINSALVNLPNYYLSLFEIPTKYASTIERHFCSFIWSG-NRQESSHLL
        GCK    P +Y G PL    KS + W PI +K+ER+L  W  MY SKGG +TLI S L +LP Y+LSLF IP K AS I++    F+W G    +  HL+
Subjt:  GCKIGVWPNSYPG-PLIRNTKSPSFWQPITDKIERRLQAWNHMYTSKGGWVTLINSALVNLPNYYLSLFEIPTKYASTIERHFCSFIWSG-NRQESSHLL

Query:  KWDKVKKPWFEGRLGIIDLKLRNKSLRAKWLWRFHNEKCALWRKVILPKYGSSH
         W +V +P   G LGI +L++ NK+L  KWLWRF NE+ ALWR VI+ KYG  H
Subjt:  KWDKVKKPWFEGRLGIIDLKLRNKSLRAKWLWRFHNEKCALWRKVILPKYGSSH

A0A2N9HPD2 Reverse transcriptase domain-containing protein1.8e-3349.35Show/hide
Query:  GCKIGVWPNSYPG-PLIRNTKSPSFWQPITDKIERRLQAWNHMYTSKGGWVTLINSALVNLPNYYLSLFEIPTKYASTIERHFCSFIWSG-NRQESSHLL
        GCK    P +Y G PL    KS + W PI +K+ER+L  W  MY SKGG +TLI S L +LP Y+LSLF IP K AS I++    F+W G    +  HL+
Subjt:  GCKIGVWPNSYPG-PLIRNTKSPSFWQPITDKIERRLQAWNHMYTSKGGWVTLINSALVNLPNYYLSLFEIPTKYASTIERHFCSFIWSG-NRQESSHLL

Query:  KWDKVKKPWFEGRLGIIDLKLRNKSLRAKWLWRFHNEKCALWRKVILPKYGSSH
         W +V +P   G LGI +L++ NK+L  KWLWRF NE+ ALWR VI+ KYG  H
Subjt:  KWDKVKKPWFEGRLGIIDLKLRNKSLRAKWLWRFHNEKCALWRKVILPKYGSSH

A0A2N9JAL9 Reverse transcriptase domain-containing protein1.8e-3349.35Show/hide
Query:  GCKIGVWPNSYPG-PLIRNTKSPSFWQPITDKIERRLQAWNHMYTSKGGWVTLINSALVNLPNYYLSLFEIPTKYASTIERHFCSFIWSG-NRQESSHLL
        GCK    P +Y G PL    KS + W PI +K+ER+L  W  MY SKGG +TLI S L +LP Y+LSLF IP K AS I++    F+W G    +  HL+
Subjt:  GCKIGVWPNSYPG-PLIRNTKSPSFWQPITDKIERRLQAWNHMYTSKGGWVTLINSALVNLPNYYLSLFEIPTKYASTIERHFCSFIWSG-NRQESSHLL

Query:  KWDKVKKPWFEGRLGIIDLKLRNKSLRAKWLWRFHNEKCALWRKVILPKYGSSH
         W +V +P   G LGI +L++ NK+L  KWLWRF NE+ ALWR VI+ KYG  H
Subjt:  KWDKVKKPWFEGRLGIIDLKLRNKSLRAKWLWRFHNEKCALWRKVILPKYGSSH

A0A5E4FU33 zf-RVT domain-containing protein (Fragment)2.8e-3446.36Show/hide
Query:  GCKIGVWPNSYPG-PLIRNTKSPSFWQPITDKIERRLQAWNHMYTSKGGWVTLINSALVNLPNYYLSLFEIPTKYASTIERHFCSFIWSGNRQ-ESSHLL
        GC++G WP  Y G PL  N ++ +FW P+ DK+E+RLQ W     SKGG +TLI + L ++P+YY+SLF++PT  A+ +E+   +F+W G  + +  HL+
Subjt:  GCKIGVWPNSYPG-PLIRNTKSPSFWQPITDKIERRLQAWNHMYTSKGGWVTLINSALVNLPNYYLSLFEIPTKYASTIERHFCSFIWSGNRQ-ESSHLL

Query:  KWDKVKKPWFEGRLGIIDLKLRNKSLRAKWLWRFHNEKCALWRKVILPKYG
        +W++V K   EG LGI  L+ RN++LRAKWLWRF  E  +LW ++I  KYG
Subjt:  KWDKVKKPWFEGRLGIIDLKLRNKSLRAKWLWRFHNEKCALWRKVILPKYG

M5VS59 Reverse transcriptase domain-containing protein (Fragment)1.4e-3345.7Show/hide
Query:  GCKIGVWPNSYPG-PLIRNTKSPSFWQPITDKIERRLQAWNHMYTSKGGWVTLINSALVNLPNYYLSLFEIPTKYASTIERHFCSFIWSGNRQ-ESSHLL
        GC++G WP  Y G PL  N ++ +FW P+ DK+E+RLQ W     SKGG +TLI + L ++P+YY+SLF++P   A+ +E+   +F+W G  + ++ HL+
Subjt:  GCKIGVWPNSYPG-PLIRNTKSPSFWQPITDKIERRLQAWNHMYTSKGGWVTLINSALVNLPNYYLSLFEIPTKYASTIERHFCSFIWSGNRQ-ESSHLL

Query:  KWDKVKKPWFEGRLGIIDLKLRNKSLRAKWLWRFHNEKCALWRKVILPKYG
        +W++V K   EG LGI  L+ RN++LRAKWLWRF  E  +LW ++I  KYG
Subjt:  KWDKVKKPWFEGRLGIIDLKLRNKSLRAKWLWRFHNEKCALWRKVILPKYG

SwissProt top hitse value%identityAlignment
P0C2F6 Putative ribonuclease H protein At1g657505.9e-1328.68Show/hide
Query:  PLIRNTKSPSFWQPITDKIERRLQAWNHMYTSKGGWVTLINSALVNLPNYYLSLFEIPTKYASTIERHFCSFIW-SGNRQESSHLLKWDKVKKPWFEGRL
        P+++   +   +  I +++  R+  W     S  G +TL  + L ++P + +S   +P    + +++   +F+W S   ++  HL+KW KV  P  EG L
Subjt:  PLIRNTKSPSFWQPITDKIERRLQAWNHMYTSKGGWVTLINSALVNLPNYYLSLFEIPTKYASTIERHFCSFIW-SGNRQESSHLLKWDKVKKPWFEGRL

Query:  GIIDLKLRNKSLRAKWLWRFHNEKCALWRKVILPKY
        G+   K  N++L +K  WR   EK +LW  V+  KY
Subjt:  GIIDLKLRNKSLRAKWLWRFHNEKCALWRKVILPKY

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GGATGTAAGATTGGGGTTTGGCCAAACTCATACCCTGGGCCTCTCATTAGAAATACCAAATCACCTTCCTTCTGGCAGCCCATCACTGACAAGATAGAGAGAAGACTTCA
AGCATGGAATCATATGTACACATCTAAAGGAGGTTGGGTTACCCTCATAAATTCAGCTTTAGTTAACTTACCCAACTACTATTTGTCTCTTTTCGAAATTCCCACTAAAT
ATGCTTCAACCATTGAAAGACATTTTTGTAGTTTTATATGGTCGGGTAATAGACAAGAATCATCTCATCTCCTAAAATGGGATAAGGTCAAGAAGCCTTGGTTTGAAGGA
AGATTAGGTATTATTGACTTGAAGCTTAGGAACAAGTCCCTCCGAGCAAAATGGCTATGGAGATTCCACAATGAAAAGTGTGCTTTATGGAGGAAGGTGATATTACCAAA
ATACGGATCCTCCCATTTTGAC
mRNA sequenceShow/hide mRNA sequence
GGATGTAAGATTGGGGTTTGGCCAAACTCATACCCTGGGCCTCTCATTAGAAATACCAAATCACCTTCCTTCTGGCAGCCCATCACTGACAAGATAGAGAGAAGACTTCA
AGCATGGAATCATATGTACACATCTAAAGGAGGTTGGGTTACCCTCATAAATTCAGCTTTAGTTAACTTACCCAACTACTATTTGTCTCTTTTCGAAATTCCCACTAAAT
ATGCTTCAACCATTGAAAGACATTTTTGTAGTTTTATATGGTCGGGTAATAGACAAGAATCATCTCATCTCCTAAAATGGGATAAGGTCAAGAAGCCTTGGTTTGAAGGA
AGATTAGGTATTATTGACTTGAAGCTTAGGAACAAGTCCCTCCGAGCAAAATGGCTATGGAGATTCCACAATGAAAAGTGTGCTTTATGGAGGAAGGTGATATTACCAAA
ATACGGATCCTCCCATTTTGAC
Protein sequenceShow/hide protein sequence
GCKIGVWPNSYPGPLIRNTKSPSFWQPITDKIERRLQAWNHMYTSKGGWVTLINSALVNLPNYYLSLFEIPTKYASTIERHFCSFIWSGNRQESSHLLKWDKVKKPWFEG
RLGIIDLKLRNKSLRAKWLWRFHNEKCALWRKVILPKYGSSHFD