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MS023356 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS023356
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionzf-RVT domain-containing protein
Genome locationscaffold378:292920..293136
RNA-Seq ExpressionMS023356
SyntenyMS023356
Gene Ontology termsNA
InterPro domainsIPR026960 - Reverse transcriptase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ONI17286.1 hypothetical protein PRUPE_3G150400 [Prunus persica]3.3e-0846.97Show/hide
Query:  IWKIKIPKNIKFFAWQ-VFFKVNTMDHIQRMSSF-YLDQQWCVLCRRASEDLDHLLWNCEFAQDLW
        IWK K P  +K F WQ V  K+NT D +QR  ++ YL   WC LC +A E  +HLL +C F+  LW
Subjt:  IWKIKIPKNIKFFAWQ-VFFKVNTMDHIQRMSSF-YLDQQWCVLCRRASEDLDHLLWNCEFAQDLW
ONI36148.1 hypothetical protein PRUPE_1G572100 [Prunus persica]8.8e-0946.48Show/hide
Query:  IWKIKIPKNIKFFAWQVFF-KVNTMDHIQRMSSF-YLDQQWCVLCRRASEDLDHLLWNCEFAQDLWLRFFR
        +WK K P  +K F W V   KVNT D +QR   F YL  QWCVLC+   E +DHL  +C F+  LW   +R
Subjt:  IWKIKIPKNIKFFAWQVFF-KVNTMDHIQRMSSF-YLDQQWCVLCRRASEDLDHLLWNCEFAQDLWLRFFR
TYK29954.1 reverse transcriptase [Cucumis melo var. makuwa]7.9e-1041.67Show/hide
Query:  IWKIKIPKNIKFFAWQVFF-KVNTMDHIQRMSSFYLDQQWCVLCRRASEDLDHLLWNCEFAQDLWLRFFRCF
        +W+IK+ K ++FF WQV   + N +D + R          C+LCR+A EDLDHLLW+C++A+ +W  F + F
Subjt:  IWKIKIPKNIKFFAWQVFF-KVNTMDHIQRMSSFYLDQQWCVLCRRASEDLDHLLWNCEFAQDLWLRFFRCF
VVA21329.1 Hypothetical predicted protein [Prunus dulcis]8.8e-0946.48Show/hide
Query:  IWKIKIPKNIKFFAWQVFF-KVNTMDHIQRMSSF-YLDQQWCVLCRRASEDLDHLLWNCEFAQDLWLRFFR
        +WK K P  +K F W V   KVNT D +QR   F YL  QWCVLC+   E +DHL  +C F+  LW   +R
Subjt:  IWKIKIPKNIKFFAWQVFF-KVNTMDHIQRMSSF-YLDQQWCVLCRRASEDLDHLLWNCEFAQDLWLRFFR
XP_038887741.1 epimerase family protein SDR39U1 homolog, chloroplastic isoform X1 [Benincasa hispida]1.8e-0950Show/hide
Query:  KIKIPKNIKFFAWQVFF-KVNTMDHIQRMSSFYLDQQWCVLCRRASEDLDHLLWNCEFAQDLWLRFFRCF
        K+KI K + FFAWQ    +VNTM  IQ  SSF L  QWC LC + SE+LDH+   C+FA   W  F   F
Subjt:  KIKIPKNIKFFAWQVFF-KVNTMDHIQRMSSFYLDQQWCVLCRRASEDLDHLLWNCEFAQDLWLRFFRCF
TrEMBL top hitse value%identityAlignment
A0A251RJG1 zf-RVT domain-containing protein4.2e-0946.48Show/hide
Query:  IWKIKIPKNIKFFAWQVFF-KVNTMDHIQRMSSF-YLDQQWCVLCRRASEDLDHLLWNCEFAQDLWLRFFR
        +WK K P  +K F W V   KVNT D +QR   F YL  QWCVLC+   E +DHL  +C F+  LW   +R
Subjt:  IWKIKIPKNIKFFAWQVFF-KVNTMDHIQRMSSF-YLDQQWCVLCRRASEDLDHLLWNCEFAQDLWLRFFR
A0A5D3E255 Reverse transcriptase3.8e-1041.67Show/hide
Query:  IWKIKIPKNIKFFAWQVFF-KVNTMDHIQRMSSFYLDQQWCVLCRRASEDLDHLLWNCEFAQDLWLRFFRCF
        +W+IK+ K ++FF WQV   + N +D + R          C+LCR+A EDLDHLLW+C++A+ +W  F + F
Subjt:  IWKIKIPKNIKFFAWQVFF-KVNTMDHIQRMSSFYLDQQWCVLCRRASEDLDHLLWNCEFAQDLWLRFFRCF
A0A5E4F2L4 zf-RVT domain-containing protein4.2e-0946.48Show/hide
Query:  IWKIKIPKNIKFFAWQVFF-KVNTMDHIQRMSSF-YLDQQWCVLCRRASEDLDHLLWNCEFAQDLWLRFFR
        +WK K P  +K F W V   KVNT D +QR   F YL  QWCVLC+   E +DHL  +C F+  LW   +R
Subjt:  IWKIKIPKNIKFFAWQVFF-KVNTMDHIQRMSSF-YLDQQWCVLCRRASEDLDHLLWNCEFAQDLWLRFFR
M5WZI1 zf-RVT domain-containing protein1.6e-0846.97Show/hide
Query:  IWKIKIPKNIKFFAWQ-VFFKVNTMDHIQRMSSF-YLDQQWCVLCRRASEDLDHLLWNCEFAQDLW
        IWK K P  +K F WQ V  K+NT D +QR  ++ YL   WC LC +A E  +HLL +C F+  LW
Subjt:  IWKIKIPKNIKFFAWQ-VFFKVNTMDHIQRMSSF-YLDQQWCVLCRRASEDLDHLLWNCEFAQDLW
M5XJT6 zf-RVT domain-containing protein (Fragment)4.2e-0946.48Show/hide
Query:  IWKIKIPKNIKFFAWQVFF-KVNTMDHIQRMSSF-YLDQQWCVLCRRASEDLDHLLWNCEFAQDLWLRFFR
        +WK K P  +K F W V   KVNT D +QR   F YL  QWCVLC+   E +DHL  +C F+  LW   +R
Subjt:  IWKIKIPKNIKFFAWQVFF-KVNTMDHIQRMSSF-YLDQQWCVLCRRASEDLDHLLWNCEFAQDLWLRFFR
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G02520.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein4.1e-0434.78Show/hide
Query:  IW-KIKIPKNIKFFAW-QVFFKVNTMDHIQRMSSFYLDQQWCVLCRRASEDLDHLLWNCEFAQDLWLRF
        IW K KIPK+  F AW  +  +++T D +  +S  ++    C+ C    E   HL ++CEFA+++W+ F
Subjt:  IW-KIKIPKNIKFFAW-QVFFKVNTMDHIQRMSSFYLDQQWCVLCRRASEDLDHLLWNCEFAQDLWLRF

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATTTGGAAGATTAAAATTCCAAAGAATATTAAGTTCTTTGCGTGGCAAGTCTTTTTTAAAGTCAATACCATGGATCATATTCAGAGGATGTCTTCCTTTTATCTGGATCA
GCAGTGGTGTGTTCTTTGTAGGAGAGCCTCGGAAGATCTCGACCATTTGTTGTGGAACTGTGAGTTCGCGCAGGATTTATGGCTTCGGTTCTTCAGATGTTTT
mRNA sequenceShow/hide mRNA sequence
ATTTGGAAGATTAAAATTCCAAAGAATATTAAGTTCTTTGCGTGGCAAGTCTTTTTTAAAGTCAATACCATGGATCATATTCAGAGGATGTCTTCCTTTTATCTGGATCA
GCAGTGGTGTGTTCTTTGTAGGAGAGCCTCGGAAGATCTCGACCATTTGTTGTGGAACTGTGAGTTCGCGCAGGATTTATGGCTTCGGTTCTTCAGATGTTTT
Protein sequenceShow/hide protein sequence
IWKIKIPKNIKFFAWQVFFKVNTMDHIQRMSSFYLDQQWCVLCRRASEDLDHLLWNCEFAQDLWLRFFRCF