CuGenDBv2

Gene ID	MS023363
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Photosystem II CP43 reaction center protein
Genome location	scaffold378:396238..396423
RNA-Seq Expression	MS023363
Synteny	MS023363
Gene Ontology terms	GO:0009772 - photosynthetic electron transport in photosystem II (biological process) GO:0018298 - protein-chromophore linkage (biological process) GO:0009523 - photosystem II (cellular component) GO:0009533 - chloroplast stromal thylakoid (cellular component) GO:0009535 - chloroplast thylakoid membrane (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0003729 - mRNA binding (molecular function) GO:0010242 - oxygen evolving activity (molecular function) GO:0016168 - chlorophyll binding (molecular function) GO:0045156 - electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity (molecular function) GO:0046872 - metal ion binding (molecular function)
InterPro domains	IPR000932 - Photosystem antenna protein-like IPR036001 - Photosystem antenna protein-like superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

CAC35458.1 unnamed protein product [Secale cereale]

1.9e-23

88.71

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Query:  LGSLNFVNGIATEINAINYVSPRSWLATSHFVLGFFPFVGHLWHARRACAAAAGFEKGIDRD
        LGSLN V G+ATEINA+NYVSPRSWL+TSHFVLGFFPFVGHLWHA RA AAAAGFEKGIDRD
Subjt:  LGSLNFVNGIATEINAINYVSPRSWLATSHFVLGFFPFVGHLWHARRACAAAAGFEKGIDRD

P10804.1 RecName: Full=Photosystem II CP43 reaction center protein; AltName: Full=PSII 43 kDa protein; AltName: Full=Protein CP-43; Flags: Precursor [Secale cereale]

1.9e-23

88.71

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Query:  LGSLNFVNGIATEINAINYVSPRSWLATSHFVLGFFPFVGHLWHARRACAAAAGFEKGIDRD
        LGSLN V G+ATEINA+NYVSPRSWL+TSHFVLGFFPFVGHLWHA RA AAAAGFEKGIDRD
Subjt:  LGSLNFVNGIATEINAINYVSPRSWLATSHFVLGFFPFVGHLWHARRACAAAAGFEKGIDRD

PHT36602.1 Photosystem II CP43 reaction center protein [Capsicum baccatum]

1.9e-23

90.32

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Query:  LGSLNFVNGIATEINAINYVSPRSWLATSHFVLGFFPFVGHLWHARRACAAAAGFEKGIDRD
        LGSLNFV G+ATEINA+NYVSPRSWLATSHFVLGFF FVGHLWHA RA AAAAGFEKGIDRD
Subjt:  LGSLNFVNGIATEINAINYVSPRSWLATSHFVLGFFPFVGHLWHARRACAAAAGFEKGIDRD

PLY74058.1 hypothetical protein LSAT_2X34800 [Lactuca sativa]

6.5e-24

90.32

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Query:  LGSLNFVNGIATEINAINYVSPRSWLATSHFVLGFFPFVGHLWHARRACAAAAGFEKGIDRD
        LGSLN V G+ATEINA+NYVSPRSWLATSHFVLGFF FVGHLWHA RACAAAAGFEKGIDRD
Subjt:  LGSLNFVNGIATEINAINYVSPRSWLATSHFVLGFFPFVGHLWHARRACAAAAGFEKGIDRD

XP_042755626.1 LOW QUALITY PROTEIN: photosystem II CP43 reaction center protein-like [Lactuca sativa]

6.5e-24

90.32

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Query:  LGSLNFVNGIATEINAINYVSPRSWLATSHFVLGFFPFVGHLWHARRACAAAAGFEKGIDRD
        LGSLN V G+ATEINA+NYVSPRSWLATSHFVLGFF FVGHLWHA RACAAAAGFEKGIDRD
Subjt:  LGSLNFVNGIATEINAINYVSPRSWLATSHFVLGFFPFVGHLWHARRACAAAAGFEKGIDRD

TrEMBL top hits

e value

%identity

Alignment

A0A2G2VUH1 Photosystem II CP43 reaction center protein

9.1e-24

90.32

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Query:  LGSLNFVNGIATEINAINYVSPRSWLATSHFVLGFFPFVGHLWHARRACAAAAGFEKGIDRD
        LGSLNFV G+ATEINA+NYVSPRSWLATSHFVLGFF FVGHLWHA RA AAAAGFEKGIDRD
Subjt:  LGSLNFVNGIATEINAINYVSPRSWLATSHFVLGFFPFVGHLWHARRACAAAAGFEKGIDRD

A0A2J6KG64 Uncharacterized protein

3.1e-24

90.32

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Query:  LGSLNFVNGIATEINAINYVSPRSWLATSHFVLGFFPFVGHLWHARRACAAAAGFEKGIDRD
        LGSLN V G+ATEINA+NYVSPRSWLATSHFVLGFF FVGHLWHA RACAAAAGFEKGIDRD
Subjt:  LGSLNFVNGIATEINAINYVSPRSWLATSHFVLGFFPFVGHLWHARRACAAAAGFEKGIDRD

A0A510BW19 Photosystem II CP43 reaction center protein

4.5e-23

90.32

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Query:  LGSLNFVNGIATEINAINYVSPRSWLATSHFVLGFFPFVGHLWHARRACAAAAGFEKGIDRD
        LGSLN V G+ATEINAINYVSPRSWLATSHFVLGFF FVGHLWHA RA AAAAGFEKGIDRD
Subjt:  LGSLNFVNGIATEINAINYVSPRSWLATSHFVLGFFPFVGHLWHARRACAAAAGFEKGIDRD

A0A6J1DPW0 Photosystem II D2 protein

4.5e-23

88.71

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Query:  LGSLNFVNGIATEINAINYVSPRSWLATSHFVLGFFPFVGHLWHARRACAAAAGFEKGIDRD
        LGSLN V+G+ATEINA+NYVSPRSWLATSHFVLGFF FVGHLWHA RA AAAAGFEKGIDRD
Subjt:  LGSLNFVNGIATEINAINYVSPRSWLATSHFVLGFFPFVGHLWHARRACAAAAGFEKGIDRD

A0A803M6L1 Uncharacterized protein

2.4e-24

90.32

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Query:  LGSLNFVNGIATEINAINYVSPRSWLATSHFVLGFFPFVGHLWHARRACAAAAGFEKGIDRD
        LGSLN V G+ATEINA+NYVSPRSWLATSHFVLGFF FVGHLWHA RACAAAAGFEKGIDRD
Subjt:  LGSLNFVNGIATEINAINYVSPRSWLATSHFVLGFFPFVGHLWHARRACAAAAGFEKGIDRD

SwissProt top hits

e value

%identity

Alignment

A6MM32 Photosystem II CP43 reaction center protein

1.6e-25

88.71

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Query:  LGSLNFVNGIATEINAINYVSPRSWLATSHFVLGFFPFVGHLWHARRACAAAAGFEKGIDRD
        LGSLN V G+ATEINA+NYVSPRSWLATSHFVLGFF FVGHLWHA RA AAAAGFEKGIDRD
Subjt:  LGSLNFVNGIATEINAINYVSPRSWLATSHFVLGFFPFVGHLWHARRACAAAAGFEKGIDRD

B1A931 Photosystem II CP43 reaction center protein

1.6e-25

88.71

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Query:  LGSLNFVNGIATEINAINYVSPRSWLATSHFVLGFFPFVGHLWHARRACAAAAGFEKGIDRD
        LGSLN V G+ATEINA+NYVSPRSWLATSHFVLGFF FVGHLWHA RA AAAAGFEKGIDRD
Subjt:  LGSLNFVNGIATEINAINYVSPRSWLATSHFVLGFFPFVGHLWHARRACAAAAGFEKGIDRD

P10804 Photosystem II CP43 reaction center protein

2.5e-26

88.71

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Query:  LGSLNFVNGIATEINAINYVSPRSWLATSHFVLGFFPFVGHLWHARRACAAAAGFEKGIDRD
        LGSLN V G+ATEINA+NYVSPRSWL+TSHFVLGFFPFVGHLWHA RA AAAAGFEKGIDRD
Subjt:  LGSLNFVNGIATEINAINYVSPRSWLATSHFVLGFFPFVGHLWHARRACAAAAGFEKGIDRD

Q70Y07 Photosystem II CP43 reaction center protein

1.6e-25

88.71

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Query:  LGSLNFVNGIATEINAINYVSPRSWLATSHFVLGFFPFVGHLWHARRACAAAAGFEKGIDRD
        LGSLN V G+ATEINA+NYVSPRSWLATSHFVLGFF FVGHLWHA RA AAAAGFEKGIDRD
Subjt:  LGSLNFVNGIATEINAINYVSPRSWLATSHFVLGFFPFVGHLWHARRACAAAAGFEKGIDRD

Q7YJX6 Photosystem II CP43 reaction center protein

1.6e-25

88.71

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Query:  LGSLNFVNGIATEINAINYVSPRSWLATSHFVLGFFPFVGHLWHARRACAAAAGFEKGIDRD
        LGSLN V G+ATEINA+NYVSPRSWLATSHFVLGFF FVGHLWHA RA AAAAGFEKGIDRD
Subjt:  LGSLNFVNGIATEINAINYVSPRSWLATSHFVLGFFPFVGHLWHARRACAAAAGFEKGIDRD

Arabidopsis top hits

e value

%identity

Alignment

ATCG00280.1 photosystem II reaction center protein C

2.5e-26

87.1

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Query:  LGSLNFVNGIATEINAINYVSPRSWLATSHFVLGFFPFVGHLWHARRACAAAAGFEKGIDRD
        LGSLN V G+ATEINA+NYVSPRSWL+TSHFVLGFF FVGHLWHA RA AAAAGFEKGIDRD
Subjt:  LGSLNFVNGIATEINAINYVSPRSWLATSHFVLGFFPFVGHLWHARRACAAAAGFEKGIDRD

Sequences

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CDS sequence

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TTAGGTTCTTTAAATTTCGTGAATGGCATAGCTACTGAAATTAATGCAATCAATTATGTCTCTCCTAGAAGTTGGTTAGCTACCTCTCATTTTGTTCTAGGATTCTTCCC
ATTCGTAGGTCATTTATGGCATGCAAGAAGGGCTTGTGCAGCTGCCGCAGGATTTGAAAAAGGAATTGATCGTGAT

mRNA sequence

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TTAGGTTCTTTAAATTTCGTGAATGGCATAGCTACTGAAATTAATGCAATCAATTATGTCTCTCCTAGAAGTTGGTTAGCTACCTCTCATTTTGTTCTAGGATTCTTCCC
ATTCGTAGGTCATTTATGGCATGCAAGAAGGGCTTGTGCAGCTGCCGCAGGATTTGAAAAAGGAATTGATCGTGAT

Protein sequence

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LGSLNFVNGIATEINAINYVSPRSWLATSHFVLGFFPFVGHLWHARRACAAAAGFEKGIDRD

MS023363 (gene) of Bitter gourd (TR) v1 genome