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MS023384 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS023384
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationscaffold378:721856..722071
RNA-Seq ExpressionMS023384
SyntenyMS023384
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0050814.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.7e-0452Show/hide
Query:  WDSIYLKKGKFFLWCVTHRSINTAE---SRMKSLYLKPNWCVLYKKSNET
        W S    K KFFLWC+  R +NT E    RM +  L+PNWCVL KK +ET
Subjt:  WDSIYLKKGKFFLWCVTHRSINTAE---SRMKSLYLKPNWCVLYKKSNET

KAA0058105.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.7e-0436.71Show/hide
Query:  YTVKSSKTFLT----SPFAEINLVLFKNWWDSIYLKKGKFFLWCVTHRSINTAE---SRMKSLYLKPNWCVLYKKSNET
        +++ S+K+ ++     P A   + L +  W +    K KFF+WC+  R +NT E    RM +  L+PNWCVL KK +ET
Subjt:  YTVKSSKTFLT----SPFAEINLVLFKNWWDSIYLKKGKFFLWCVTHRSINTAE---SRMKSLYLKPNWCVLYKKSNET

KAA0058554.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]5.1e-0450Show/hide
Query:  WDSIYLKKGKFFLWCVTHRSINTAE---SRMKSLYLKPNWCVLYKKSNET
        W S    K KFF+WC+  R +NT E    RM +  L+PNWCVL KK +ET
Subjt:  WDSIYLKKGKFFLWCVTHRSINTAE---SRMKSLYLKPNWCVLYKKSNET

TYK10356.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.3e-0441.03Show/hide
Query:  YTVKSSKTFLTSP----FAEINLVLFKNWWDSIYLKKGKFFLWCVTHRSINTAE---SRMKSLYLKPNWCVLYKKSNE
        Y+V S K  L  P     A  N   FKN W S   KK KFF+W + + S+NTA+    RM +L  +P+WCV+ K++ E
Subjt:  YTVKSSKTFLTSP----FAEINLVLFKNWWDSIYLKKGKFFLWCVTHRSINTAE---SRMKSLYLKPNWCVLYKKSNE

TrEMBL top hitse value%identityAlignment
A0A5A7T5L3 LINE-1 retrotransposable element ORF2 protein5.4e-0440.26Show/hide
Query:  YTVKSSKTFLTSPFAEINL---VLFKNWWDSIYLKKGKFFLWCVTHRSINTA---ESRMKSLYLKPNWCVLYKKSNE
        YT  S+K  L S     NL     ++  W S   KKGKFF+W + H SINT    + R+ + YL+P+ C LYK   E
Subjt:  YTVKSSKTFLTSPFAEINL---VLFKNWWDSIYLKKGKFFLWCVTHRSINTA---ESRMKSLYLKPNWCVLYKKSNE

A0A5A7UTS4 LINE-1 retrotransposable element ORF2 protein2.4e-0450Show/hide
Query:  WDSIYLKKGKFFLWCVTHRSINTAE---SRMKSLYLKPNWCVLYKKSNET
        W S    K KFF+WC+  R +NT E    RM +  L+PNWCVL KK +ET
Subjt:  WDSIYLKKGKFFLWCVTHRSINTAE---SRMKSLYLKPNWCVLYKKSNET

A0A5A7UWW1 LINE-1 retrotransposable element ORF2 protein8.4e-0536.71Show/hide
Query:  YTVKSSKTFLT----SPFAEINLVLFKNWWDSIYLKKGKFFLWCVTHRSINTAE---SRMKSLYLKPNWCVLYKKSNET
        +++ S+K+ ++     P A   + L +  W +    K KFF+WC+  R +NT E    RM +  L+PNWCVL KK +ET
Subjt:  YTVKSSKTFLT----SPFAEINLVLFKNWWDSIYLKKGKFFLWCVTHRSINTAE---SRMKSLYLKPNWCVLYKKSNET

A0A5D3C9J6 LINE-1 retrotransposable element ORF2 protein8.4e-0552Show/hide
Query:  WDSIYLKKGKFFLWCVTHRSINTAE---SRMKSLYLKPNWCVLYKKSNET
        W S    K KFFLWC+  R +NT E    RM +  L+PNWCVL KK +ET
Subjt:  WDSIYLKKGKFFLWCVTHRSINTAE---SRMKSLYLKPNWCVLYKKSNET

A0A5D3CJ08 LINE-1 retrotransposable element ORF2 protein6.4e-0541.03Show/hide
Query:  YTVKSSKTFLTSP----FAEINLVLFKNWWDSIYLKKGKFFLWCVTHRSINTAE---SRMKSLYLKPNWCVLYKKSNE
        Y+V S K  L  P     A  N   FKN W S   KK KFF+W + + S+NTA+    RM +L  +P+WCV+ K++ E
Subjt:  YTVKSSKTFLTSP----FAEINLVLFKNWWDSIYLKKGKFFLWCVTHRSINTAE---SRMKSLYLKPNWCVLYKKSNE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TACACTGTGAAATCCTCCAAAACTTTTCTGACGTCCCCTTTTGCAGAAATTAACTTAGTTTTATTCAAGAATTGGTGGGACTCTATCTATCTAAAGAAGGGTAAATTCTT
CCTATGGTGTGTTACTCATAGAAGCATCAACACAGCTGAATCACGCATGAAATCCCTCTACCTCAAGCCAAATTGGTGTGTCCTATATAAAAAGAGCAACGAAACT
mRNA sequenceShow/hide mRNA sequence
TACACTGTGAAATCCTCCAAAACTTTTCTGACGTCCCCTTTTGCAGAAATTAACTTAGTTTTATTCAAGAATTGGTGGGACTCTATCTATCTAAAGAAGGGTAAATTCTT
CCTATGGTGTGTTACTCATAGAAGCATCAACACAGCTGAATCACGCATGAAATCCCTCTACCTCAAGCCAAATTGGTGTGTCCTATATAAAAAGAGCAACGAAACT
Protein sequenceShow/hide protein sequence
YTVKSSKTFLTSPFAEINLVLFKNWWDSIYLKKGKFFLWCVTHRSINTAESRMKSLYLKPNWCVLYKKSNET