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MS023393 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS023393
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationscaffold415:99754..99927
RNA-Seq ExpressionMS023393
SyntenyMS023393
Gene Ontology termsNA
InterPro domainsIPR026960 - Reverse transcriptase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0041397.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]8.8e-0741.82Show/hide
Query:  KRVKFFLWCLFYRSVHTAEKLQRHFPSWSLSPPVCGLYCRNDENLAHIFFHCPCS
        K+ KFF+W L +  ++TA++LQ+  P+W+LSP  C +  ++ E++ H+F HCP S
Subjt:  KRVKFFLWCLFYRSVHTAEKLQRHFPSWSLSPPVCGLYCRNDENLAHIFFHCPCS

KAA0044451.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]8.8e-0741.82Show/hide
Query:  KRVKFFLWCLFYRSVHTAEKLQRHFPSWSLSPPVCGLYCRNDENLAHIFFHCPCS
        K+ KFF+W L +  ++TA++LQ+  P+W+LSP  C +  ++ E++ H+F HCP S
Subjt:  KRVKFFLWCLFYRSVHTAEKLQRHFPSWSLSPPVCGLYCRNDENLAHIFFHCPCS

KAA0044556.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]8.8e-0741.82Show/hide
Query:  KRVKFFLWCLFYRSVHTAEKLQRHFPSWSLSPPVCGLYCRNDENLAHIFFHCPCS
        K+ KFF+W L +  ++TA++LQ+  P+W+LSP  C +  ++ E++ H+F HCP S
Subjt:  KRVKFFLWCLFYRSVHTAEKLQRHFPSWSLSPPVCGLYCRNDENLAHIFFHCPCS

TYK29578.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]8.8e-0741.82Show/hide
Query:  KRVKFFLWCLFYRSVHTAEKLQRHFPSWSLSPPVCGLYCRNDENLAHIFFHCPCS
        K+ KFF+W L +  ++TA++LQ+  P+W+LSP  C +  ++ E++ H+F HCP S
Subjt:  KRVKFFLWCLFYRSVHTAEKLQRHFPSWSLSPPVCGLYCRNDENLAHIFFHCPCS

TYK31299.1 protein FAM91A1 [Cucumis melo var. makuwa]5.1e-0753.85Show/hide
Query:  KRVKFFLWCLFYRSVHTAEKLQRHFPSWSLSPPVCGLYCRNDENLAHIFFHC
        K+VKFFLW L YRS++   KLQR FP+ SLSP +C L  +  E   H+F HC
Subjt:  KRVKFFLWCLFYRSVHTAEKLQRHFPSWSLSPPVCGLYCRNDENLAHIFFHC

TrEMBL top hitse value%identityAlignment
A0A5A7T9I7 LINE-1 retrotransposable element ORF2 protein4.2e-0741.82Show/hide
Query:  KRVKFFLWCLFYRSVHTAEKLQRHFPSWSLSPPVCGLYCRNDENLAHIFFHCPCS
        K+ KFF+W L +  ++TA++LQ+  P+W+LSP  C +  ++ E++ H+F HCP S
Subjt:  KRVKFFLWCLFYRSVHTAEKLQRHFPSWSLSPPVCGLYCRNDENLAHIFFHCPCS

A0A5A7TIB8 LINE-1 retrotransposable element ORF2 protein4.2e-0741.82Show/hide
Query:  KRVKFFLWCLFYRSVHTAEKLQRHFPSWSLSPPVCGLYCRNDENLAHIFFHCPCS
        K+ KFF+W L +  ++TA++LQ+  P+W+LSP  C +  ++ E++ H+F HCP S
Subjt:  KRVKFFLWCLFYRSVHTAEKLQRHFPSWSLSPPVCGLYCRNDENLAHIFFHCPCS

A0A5A7TSA7 LINE-1 retrotransposable element ORF2 protein4.2e-0741.82Show/hide
Query:  KRVKFFLWCLFYRSVHTAEKLQRHFPSWSLSPPVCGLYCRNDENLAHIFFHCPCS
        K+ KFF+W L +  ++TA++LQ+  P+W+LSP  C +  ++ E++ H+F HCP S
Subjt:  KRVKFFLWCLFYRSVHTAEKLQRHFPSWSLSPPVCGLYCRNDENLAHIFFHCPCS

A0A5D3E1E3 LINE-1 retrotransposable element ORF2 protein4.2e-0741.82Show/hide
Query:  KRVKFFLWCLFYRSVHTAEKLQRHFPSWSLSPPVCGLYCRNDENLAHIFFHCPCS
        K+ KFF+W L +  ++TA++LQ+  P+W+LSP  C +  ++ E++ H+F HCP S
Subjt:  KRVKFFLWCLFYRSVHTAEKLQRHFPSWSLSPPVCGLYCRNDENLAHIFFHCPCS

A0A5D3E632 Protein FAM91A12.5e-0753.85Show/hide
Query:  KRVKFFLWCLFYRSVHTAEKLQRHFPSWSLSPPVCGLYCRNDENLAHIFFHC
        K+VKFFLW L YRS++   KLQR FP+ SLSP +C L  +  E   H+F HC
Subjt:  KRVKFFLWCLFYRSVHTAEKLQRHFPSWSLSPPVCGLYCRNDENLAHIFFHC

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AAAAGGGTCAAATTCTTCCTTTGGTGTCTGTTTTATAGAAGTGTCCACACAGCGGAAAAACTCCAAAGACATTTCCCCAGTTGGTCCTTGTCCCCTCCTGTGTGC
GGTCTCTATTGTAGAAATGATGAGAATCTGGCTCACATTTTTTTTCACTGCCCATGTTCGGCAATCATT
mRNA sequenceShow/hide mRNA sequence
AAAAGGGTCAAATTCTTCCTTTGGTGTCTGTTTTATAGAAGTGTCCACACAGCGGAAAAACTCCAAAGACATTTCCCCAGTTGGTCCTTGTCCCCTCCTGTGTGC
GGTCTCTATTGTAGAAATGATGAGAATCTGGCTCACATTTTTTTTCACTGCCCATGTTCGGCAATCATT
Protein sequenceShow/hide protein sequence
KRVKFFLWCLFYRSVHTAEKLQRHFPSWSLSPPVCGLYCRNDENLAHIFFHCPCSAII