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MS023481 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS023481
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionCleavage and polyadenylation specificity factor subunit 1
Genome locationscaffold787:272394..272681
RNA-Seq ExpressionMS023481
SyntenyMS023481
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYJ97748.1 taxadiene 5-alpha hydroxylase-like [Cucumis melo var. makuwa]8.0e-0531.52Show/hide
Query:  KEQVRLLCSNKGWCTLGQFYLKLK--CVTVKNMPELGKSLFIEDGFKNSHIKLCNVETLQYMQNKCGCYIGCVKKSLSMLDCMEAFLKSKSN
        KEQV+LLCSN+G   +G+FY+K +     +   P+L  S      F+   +K CN+ + + +++ CG  +   K ++  +D +E  LK + N
Subjt:  KEQVRLLCSNKGWCTLGQFYLKLK--CVTVKNMPELGKSLFIEDGFKNSHIKLCNVETLQYMQNKCGCYIGCVKKSLSMLDCMEAFLKSKSN
TYK05762.1 cleavage and polyadenylation specificity factor subunit 1 [Cucumis melo var. makuwa]3.9e-0430Show/hide
Query:  FHDSKEQVRLLCSNKGWCTLGQFYLKLK------CVTVKNMPELGKSLFIEDGFKNSHIKLCNVETLQYMQNKCGCYIGCVKKSLSMLDCMEAFLKSKSN
        F   KEQ  L+C NKGW T+G FY+K +        + K +P  G  + +    +   +   N+E+   + + CG YI  V+++  + + +EAF++ K N
Subjt:  FHDSKEQVRLLCSNKGWCTLGQFYLKLK------CVTVKNMPELGKSLFIEDGFKNSHIKLCNVETLQYMQNKCGCYIGCVKKSLSMLDCMEAFLKSKSN
TrEMBL top hitse value%identityAlignment
A0A5D3BHT7 Taxadiene 5-alpha hydroxylase-like3.9e-0531.52Show/hide
Query:  KEQVRLLCSNKGWCTLGQFYLKLK--CVTVKNMPELGKSLFIEDGFKNSHIKLCNVETLQYMQNKCGCYIGCVKKSLSMLDCMEAFLKSKSN
        KEQV+LLCSN+G   +G+FY+K +     +   P+L  S      F+   +K CN+ + + +++ CG  +   K ++  +D +E  LK + N
Subjt:  KEQVRLLCSNKGWCTLGQFYLKLK--CVTVKNMPELGKSLFIEDGFKNSHIKLCNVETLQYMQNKCGCYIGCVKKSLSMLDCMEAFLKSKSN
A0A5D3C3G6 Cleavage and polyadenylation specificity factor subunit 11.9e-0430Show/hide
Query:  FHDSKEQVRLLCSNKGWCTLGQFYLKLK------CVTVKNMPELGKSLFIEDGFKNSHIKLCNVETLQYMQNKCGCYIGCVKKSLSMLDCMEAFLKSKSN
        F   KEQ  L+C NKGW T+G FY+K +        + K +P  G  + +    +   +   N+E+   + + CG YI  V+++  + + +EAF++ K N
Subjt:  FHDSKEQVRLLCSNKGWCTLGQFYLKLK------CVTVKNMPELGKSLFIEDGFKNSHIKLCNVETLQYMQNKCGCYIGCVKKSLSMLDCMEAFLKSKSN
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCCTTTCATGATAGTAAAGAACAGGTTAGGCTTCTTTGCTCAAATAAAGGTTGGTGCACTCTTGGACAATTTTATTTGAAATTGAAGTGTGTGACAGTGAAAAACAT
GCCAGAACTAGGGAAATCCCTATTTATAGAGGATGGATTTAAAAATTCGCATATCAAGTTGTGCAATGTGGAAACTCTTCAATACATGCAAAATAAATGTGGATGTTACA
TTGGATGTGTCAAGAAGTCCCTGTCGATGTTGGATTGTATGGAAGCTTTCCTTAAAAGCAAAAGTAAC
mRNA sequenceShow/hide mRNA sequence
ATGTCCTTTCATGATAGTAAAGAACAGGTTAGGCTTCTTTGCTCAAATAAAGGTTGGTGCACTCTTGGACAATTTTATTTGAAATTGAAGTGTGTGACAGTGAAAAACAT
GCCAGAACTAGGGAAATCCCTATTTATAGAGGATGGATTTAAAAATTCGCATATCAAGTTGTGCAATGTGGAAACTCTTCAATACATGCAAAATAAATGTGGATGTTACA
TTGGATGTGTCAAGAAGTCCCTGTCGATGTTGGATTGTATGGAAGCTTTCCTTAAAAGCAAAAGTAAC
Protein sequenceShow/hide protein sequence
MSFHDSKEQVRLLCSNKGWCTLGQFYLKLKCVTVKNMPELGKSLFIEDGFKNSHIKLCNVETLQYMQNKCGCYIGCVKKSLSMLDCMEAFLKSKSN