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MS023490 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS023490
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold787:423489..423698
RNA-Seq ExpressionMS023490
SyntenyMS023490
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_021994198.1 uncharacterized protein LOC110890853 [Helianthus annuus]2.4e-1154.29Show/hide
Query:  YYSKPLISARLSYRDYNSLLERIVARVRPWSNHILSYVGRLQLIRSVLQSCYVYWTSVFLLSMQIIREVE
        Y   PLIS+RL Y+D   L+E +  R+  W N  LS+ GRLQLIRSVL S +VYW SVF+L  +II+E+E
Subjt:  YYSKPLISARLSYRDYNSLLERIVARVRPWSNHILSYVGRLQLIRSVLQSCYVYWTSVFLLSMQIIREVE

XP_022015043.1 uncharacterized protein LOC110914563 [Helianthus annuus]3.2e-1152.86Show/hide
Query:  YYSKPLISARLSYRDYNSLLERIVARVRPWSNHILSYVGRLQLIRSVLQSCYVYWTSVFLLSMQIIREVE
        Y   PLISARL Y +   L+ER+  R+  W N +LS+ GRLQLI SVL S ++YW SVF+L ++II+E+E
Subjt:  YYSKPLISARLSYRDYNSLLERIVARVRPWSNHILSYVGRLQLIRSVLQSCYVYWTSVFLLSMQIIREVE

XP_022032684.1 uncharacterized protein LOC110933787 [Helianthus annuus]4.1e-1152.86Show/hide
Query:  YYSKPLISARLSYRDYNSLLERIVARVRPWSNHILSYVGRLQLIRSVLQSCYVYWTSVFLLSMQIIREVE
        Y   PLIS RL+YRD   L+ER+  R+  W +  LS+ GRLQLI SVL S Y YW SVF+L ++I++E+E
Subjt:  YYSKPLISARLSYRDYNSLLERIVARVRPWSNHILSYVGRLQLIRSVLQSCYVYWTSVFLLSMQIIREVE

XP_022041433.1 uncharacterized protein LOC110944014 [Helianthus annuus]3.2e-1152.86Show/hide
Query:  YYSKPLISARLSYRDYNSLLERIVARVRPWSNHILSYVGRLQLIRSVLQSCYVYWTSVFLLSMQIIREVE
        Y   PLIS RL Y+D   L+ER+ AR+  W    LS+ GRLQLIRSVL S ++YW SVF+L  +II+++E
Subjt:  YYSKPLISARLSYRDYNSLLERIVARVRPWSNHILSYVGRLQLIRSVLQSCYVYWTSVFLLSMQIIREVE

XP_031740424.1 uncharacterized protein LOC116403425 [Cucumis sativus]7.1e-1151.43Show/hide
Query:  YYSKPLISARLSYRDYNSLLERIVARVRPWSNHILSYVGRLQLIRSVLQSCYVYWTSVFLLSMQIIREVE
        Y   PL+S RL   D + L++RI +R+R WS  +LS+ GRLQL+RSVL+S  VYW SVF+L M++ R+V+
Subjt:  YYSKPLISARLSYRDYNSLLERIVARVRPWSNHILSYVGRLQLIRSVLQSCYVYWTSVFLLSMQIIREVE

TrEMBL top hitse value%identityAlignment
A0A251S8W3 Putative reverse transcriptase zinc-binding domain-containing protein2.0e-1152.86Show/hide
Query:  YYSKPLISARLSYRDYNSLLERIVARVRPWSNHILSYVGRLQLIRSVLQSCYVYWTSVFLLSMQIIREVE
        Y   PLIS+RL Y+D N L+E +  R+  W N  LS+ GRLQLIRSVL S ++YW SVF+L  +II+++E
Subjt:  YYSKPLISARLSYRDYNSLLERIVARVRPWSNHILSYVGRLQLIRSVLQSCYVYWTSVFLLSMQIIREVE

A0A251SNJ1 Putative RNA-directed DNA polymerase, eukaryota, Reverse transcriptase zinc-binding domain protein1.0e-1051.43Show/hide
Query:  YYSKPLISARLSYRDYNSLLERIVARVRPWSNHILSYVGRLQLIRSVLQSCYVYWTSVFLLSMQIIREVE
        Y   PLIS+RL Y+D   L+ER+  R+  W    LS+ GRLQLIRSVL S ++YW SVF+L  ++I E+E
Subjt:  YYSKPLISARLSYRDYNSLLERIVARVRPWSNHILSYVGRLQLIRSVLQSCYVYWTSVFLLSMQIIREVE

A0A251VNU9 Putative RNA-directed DNA polymerase, eukaryota, Reverse transcriptase zinc-binding domain protein7.6e-1150Show/hide
Query:  YYSKPLISARLSYRDYNSLLERIVARVRPWSNHILSYVGRLQLIRSVLQSCYVYWTSVFLLSMQIIREVE
        Y   PLI ++LSY+D +SL+E +  R+  W N +LS+ GRLQLI SVL S +VYW+SVF+L  ++I+++E
Subjt:  YYSKPLISARLSYRDYNSLLERIVARVRPWSNHILSYVGRLQLIRSVLQSCYVYWTSVFLLSMQIIREVE

A0A4U5R122 Uncharacterized protein1.7e-1050Show/hide
Query:  YYSKPLISARLSYRDYNSLLERIVARVRPWSNHILSYVGRLQLIRSVLQSCYVYWTSVFLLSMQIIREVE
        Y   PL+S+RL++RD   LLERI+AR++ W++  L+Y GRLQLI+SVL S  VYW+++F+L    I+ +E
Subjt:  YYSKPLISARLSYRDYNSLLERIVARVRPWSNHILSYVGRLQLIRSVLQSCYVYWTSVFLLSMQIIREVE

A0A5B7BPG3 Uncharacterized protein (Fragment)1.7e-1048.57Show/hide
Query:  YYSKPLISARLSYRDYNSLLERIVARVRPWSNHILSYVGRLQLIRSVLQSCYVYWTSVFLLSMQIIREVE
        Y   PLIS RL + D   L++RI  R++ W+N  LSY GRLQL+ SVL S  VYW+S+F+L  Q+++++E
Subjt:  YYSKPLISARLSYRDYNSLLERIVARVRPWSNHILSYVGRLQLIRSVLQSCYVYWTSVFLLSMQIIREVE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G24255.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein1.2e-0838.57Show/hide
Query:  YYSKPLISARLSYRDYNSLLERIVARVRPWSNHILSYVGRLQLIRSVLQSCYVYWTSVFLLSMQIIREVE
        Y   PL++ +++  DY  L+E+I  R+  W+   LS+ GRLQLI SV+ S   +W S F L    I+E++
Subjt:  YYSKPLISARLSYRDYNSLLERIVARVRPWSNHILSYVGRLQLIRSVLQSCYVYWTSVFLLSMQIIREVE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TATTATAGTAAACCTTTGATCTCTGCTCGTCTTTCTTATAGGGATTATAATTCCTTGTTAGAGCGCATTGTGGCGAGAGTTCGCCCCTGGTCAAATCATATATTGTCGTA
TGTTGGAAGACTTCAATTAATTAGGTCGGTTCTCCAAAGTTGTTATGTGTATTGGACTAGTGTTTTTCTGTTGTCGATGCAAATTATTCGCGAGGTGGAA
mRNA sequenceShow/hide mRNA sequence
TATTATAGTAAACCTTTGATCTCTGCTCGTCTTTCTTATAGGGATTATAATTCCTTGTTAGAGCGCATTGTGGCGAGAGTTCGCCCCTGGTCAAATCATATATTGTCGTA
TGTTGGAAGACTTCAATTAATTAGGTCGGTTCTCCAAAGTTGTTATGTGTATTGGACTAGTGTTTTTCTGTTGTCGATGCAAATTATTCGCGAGGTGGAA
Protein sequenceShow/hide protein sequence
YYSKPLISARLSYRDYNSLLERIVARVRPWSNHILSYVGRLQLIRSVLQSCYVYWTSVFLLSMQIIREVE