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MS023556 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS023556
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionReverse transcriptase zinc-binding domain
Genome locationscaffold1258:44537..44773
RNA-Seq ExpressionMS023556
SyntenyMS023556
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
BBG98819.1 VIRB2-interacting protein 2 [Prunus dulcis]4.2e-0435.44Show/hide
Query:  SVLSSALGHPFTNEAKALWMHFIQAMLWSMWLERNRRIFQG-KEASTTSLFESIVSLVVSWCKCSPTFQHYSFVSLLTN
        S+   ALG     +AK LW   +QA++W++WLERNRRIF+  K      L++ +      W   SP F+   + S++ N
Subjt:  SVLSSALGHPFTNEAKALWMHFIQAMLWSMWLERNRRIFQG-KEASTTSLFESIVSLVVSWCKCSPTFQHYSFVSLLTN

BBN69746.1 VIRB2-interacting protein 2 [Prunus dulcis]4.2e-0435.44Show/hide
Query:  SVLSSALGHPFTNEAKALWMHFIQAMLWSMWLERNRRIFQG-KEASTTSLFESIVSLVVSWCKCSPTFQHYSFVSLLTN
        S+   ALG     +AK LW   +QA++W++WLERNRRIF+  K      L++ +      W   SP F+   + S++ N
Subjt:  SVLSSALGHPFTNEAKALWMHFIQAMLWSMWLERNRRIFQG-KEASTTSLFESIVSLVVSWCKCSPTFQHYSFVSLLTN

OVA10600.1 hypothetical protein BVC80_3295g1 [Macleaya cordata]7.2e-0435.38Show/hide
Query:  EAKALWMHFIQAMLWSMWLERNRRIFQGKEASTTSLFESIVSLVVSWCKCSPTFQHYSFVSLLTN
        + K +W   + A++W +W+ERNRR F+ KE S   L   I +L+  W     +FQ  SF +++ N
Subjt:  EAKALWMHFIQAMLWSMWLERNRRIFQGKEASTTSLFESIVSLVVSWCKCSPTFQHYSFVSLLTN

OVA14077.1 Reverse transcriptase zinc-binding domain [Macleaya cordata]2.5e-0437.7Show/hide
Query:  KALWMHFIQAMLWSMWLERNRRIFQGKEASTTSLFESIVSLVVSWCKCSPTFQHYSFVSLL
        K +W     A+LW++W+ERN+R+F  +E+S   +  ++ SLV  WC    TF+ Y F  L+
Subjt:  KALWMHFIQAMLWSMWLERNRRIFQGKEASTTSLFESIVSLVVSWCKCSPTFQHYSFVSLL

XP_010250619.1 PREDICTED: uncharacterized protein LOC104592815 isoform X3 [Nelumbo nucifera]9.5e-0438.81Show/hide
Query:  TNEAKALWMHFIQAMLWSMWLERNRRIFQGKEASTTSLFESIVSLVVSWCKCSPTFQHYSFVSLLTN
        T   K +W     A LW++W E+N RIFQ +E S   + E I++  +SW K S     YSF  L  N
Subjt:  TNEAKALWMHFIQAMLWSMWLERNRRIFQGKEASTTSLFESIVSLVVSWCKCSPTFQHYSFVSLLTN

TrEMBL top hitse value%identityAlignment
A0A200QJC8 Uncharacterized protein3.5e-0435.38Show/hide
Query:  EAKALWMHFIQAMLWSMWLERNRRIFQGKEASTTSLFESIVSLVVSWCKCSPTFQHYSFVSLLTN
        + K +W   + A++W +W+ERNRR F+ KE S   L   I +L+  W     +FQ  SF +++ N
Subjt:  EAKALWMHFIQAMLWSMWLERNRRIFQGKEASTTSLFESIVSLVVSWCKCSPTFQHYSFVSLLTN

A0A200QUD8 Reverse transcriptase zinc-binding domain1.2e-0437.7Show/hide
Query:  KALWMHFIQAMLWSMWLERNRRIFQGKEASTTSLFESIVSLVVSWCKCSPTFQHYSFVSLL
        K +W     A+LW++W+ERN+R+F  +E+S   +  ++ SLV  WC    TF+ Y F  L+
Subjt:  KALWMHFIQAMLWSMWLERNRRIFQGKEASTTSLFESIVSLVVSWCKCSPTFQHYSFVSLL

A0A4Y1R3V4 VIRB2-interacting protein 22.1e-0435.44Show/hide
Query:  SVLSSALGHPFTNEAKALWMHFIQAMLWSMWLERNRRIFQG-KEASTTSLFESIVSLVVSWCKCSPTFQHYSFVSLLTN
        S+   ALG     +AK LW   +QA++W++WLERNRRIF+  K      L++ +      W   SP F+   + S++ N
Subjt:  SVLSSALGHPFTNEAKALWMHFIQAMLWSMWLERNRRIFQG-KEASTTSLFESIVSLVVSWCKCSPTFQHYSFVSLLTN

A0A5H2Y6K0 VIRB2-interacting protein 22.1e-0435.44Show/hide
Query:  SVLSSALGHPFTNEAKALWMHFIQAMLWSMWLERNRRIFQG-KEASTTSLFESIVSLVVSWCKCSPTFQHYSFVSLLTN
        S+   ALG     +AK LW   +QA++W++WLERNRRIF+  K      L++ +      W   SP F+   + S++ N
Subjt:  SVLSSALGHPFTNEAKALWMHFIQAMLWSMWLERNRRIFQG-KEASTTSLFESIVSLVVSWCKCSPTFQHYSFVSLLTN

A0A803QEA6 Uncharacterized protein2.7e-0435.06Show/hide
Query:  DSVLSSALGHPFTNEAKALWMHFIQAMLWSMWLERNRRIFQGKEASTTSLFESIVSLVVSWCKCSPTFQHYSFVSLL
        D +L S +G   +  + +LW   + ++LW +WLERN RIF+G E+S  +L++ I     SW   +  F++ SF+ L+
Subjt:  DSVLSSALGHPFTNEAKALWMHFIQAMLWSMWLERNRRIFQGKEASTTSLFESIVSLVVSWCKCSPTFQHYSFVSLL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GACTCCGTCCTATCCTCTGCTCTCGGCCATCCATTTACTAACGAAGCTAAAGCACTCTGGATGCATTTCATTCAGGCCATGCTTTGGTCCATGTGGCTGGAAAGAAACCG
TAGGATCTTCCAAGGAAAAGAGGCATCTACTACCAGCCTTTTTGAATCCATAGTGTCATTGGTTGTATCATGGTGCAAATGTTCTCCTACTTTTCAACACTATAGTTTTG
TCTCTCTTTTAACCAAT
mRNA sequenceShow/hide mRNA sequence
GACTCCGTCCTATCCTCTGCTCTCGGCCATCCATTTACTAACGAAGCTAAAGCACTCTGGATGCATTTCATTCAGGCCATGCTTTGGTCCATGTGGCTGGAAAGAAACCG
TAGGATCTTCCAAGGAAAAGAGGCATCTACTACCAGCCTTTTTGAATCCATAGTGTCATTGGTTGTATCATGGTGCAAATGTTCTCCTACTTTTCAACACTATAGTTTTG
TCTCTCTTTTAACCAAT
Protein sequenceShow/hide protein sequence
DSVLSSALGHPFTNEAKALWMHFIQAMLWSMWLERNRRIFQGKEASTTSLFESIVSLVVSWCKCSPTFQHYSFVSLLTN