; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS023560 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS023560
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionSAGA-associated factor 11
Genome locationscaffold1258:97733..98367
RNA-Seq ExpressionMS023560
SyntenyMS023560
Gene Ontology termsGO:0006325 - chromatin organization (biological process)
GO:0016310 - phosphorylation (biological process)
GO:0035616 - histone H2B conserved C-terminal lysine deubiquitination (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0031969 - chloroplast membrane (cellular component)
GO:0070461 - SAGA-type complex (cellular component)
GO:0071819 - DUBm complex (cellular component)
GO:0016301 - kinase activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR013246 - SAGA complex, Sgf11 subunit


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0060025.1 farnesol kinase [Cucumis melo var. makuwa]5.6e-7391.19Show/hide
Query:  QLSSNFFGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQARVRVADSSNSSEANGKYIVDIFGQTHPSVANEIFDCMNCGRSIMAGRFAPHLE
        QLSSN FGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQARVRVADSSNSSEANGKY+VDIFGQTHPSVANEIFDCMNCGRSIMAGRFAPHLE
Subjt:  QLSSNFFGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQARVRVADSSNSSEANGKYIVDIFGQTHPSVANEIFDCMNCGRSIMAGRFAPHLE

Query:  KCMGRGRKARLKVTRSSTAAQGRYSRGSPVPAYSPYTSSPGANRLPNGMSGVAGEEYSN
        KCMGRGRKAR KVTRSSTAAQ RYSRG+PV AYSPY +S   NRLPNG S +AGEEYSN
Subjt:  KCMGRGRKARLKVTRSSTAAQGRYSRGSPVPAYSPYTSSPGANRLPNGMSGVAGEEYSN

XP_004153719.1 SAGA-associated factor 11 [Cucumis sativus]1.9e-7690.91Show/hide
Query:  QLSSNFFGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQARVRVADSSNSSEANGKYIVDIFGQTHPSVANEIFDCMNCGRSIMAGRFAPHLE
        QLSSN FGDLLDSVIVD+ASECHRIARLGLDRNLEEEEEELRLSAQARVRVADSSNSSEANGKY+VDIFGQTHPSVANEIFDCMNCGRSIMAGRFAPHLE
Subjt:  QLSSNFFGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQARVRVADSSNSSEANGKYIVDIFGQTHPSVANEIFDCMNCGRSIMAGRFAPHLE

Query:  KCMGRGRKARLKVTRSSTAAQGRYSRGSPVPAYSPYTSSPGANRLPNGMSGVAGEEYSNGTSEDP
        KCMGRGRKAR KVTRSSTAAQ RYSRG+PV AYSPY +S   NRLPNG S +AGEEYSNGTSEDP
Subjt:  KCMGRGRKARLKVTRSSTAAQGRYSRGSPVPAYSPYTSSPGANRLPNGMSGVAGEEYSNGTSEDP

XP_008457340.1 PREDICTED: ataxin-7-like protein 3 [Cucumis melo]1.4e-7691.52Show/hide
Query:  QLSSNFFGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQARVRVADSSNSSEANGKYIVDIFGQTHPSVANEIFDCMNCGRSIMAGRFAPHLE
        QLSSN FGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQARVRVADSSNSSEANGKY+VDIFGQTHPSVANEIFDCMNCGRSIMAGRFAPHLE
Subjt:  QLSSNFFGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQARVRVADSSNSSEANGKYIVDIFGQTHPSVANEIFDCMNCGRSIMAGRFAPHLE

Query:  KCMGRGRKARLKVTRSSTAAQGRYSRGSPVPAYSPYTSSPGANRLPNGMSGVAGEEYSNGTSEDP
        KCMGRGRKAR KVTRSSTAAQ RYSRG+PV AYSPY +S   NRLPNG S +AGEEYSNGTSEDP
Subjt:  KCMGRGRKARLKVTRSSTAAQGRYSRGSPVPAYSPYTSSPGANRLPNGMSGVAGEEYSNGTSEDP

XP_022150963.1 ataxin-7-like protein 3 [Momordica charantia]6.4e-8598.8Show/hide
Query:  YLQLSSNFFGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQARVRVADSSNSSEANGKYIVDIFGQTHPSVANEIFDCMNCGRSIMAGRFAPH
        + QLSSNFFGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQARVRVADSSNSSEANGKYIVDIFGQTHPSVANEIFDCMNCGRSIMAGRFAPH
Subjt:  YLQLSSNFFGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQARVRVADSSNSSEANGKYIVDIFGQTHPSVANEIFDCMNCGRSIMAGRFAPH

Query:  LEKCMGRGRKARLKVTRSSTAAQGRYSRGSPVPAYSPYTSSPGANRLPNGMSGVAGEEYSNGTSEDP
        LEKCMGRGRKARLKVTRSSTAAQGRYSRGSPVPAYSPYTSSPGANRLPNGMSGVAGEEYSNGTSEDP
Subjt:  LEKCMGRGRKARLKVTRSSTAAQGRYSRGSPVPAYSPYTSSPGANRLPNGMSGVAGEEYSNGTSEDP

XP_038893583.1 SAGA-associated factor 11 [Benincasa hispida]7.8e-7589.7Show/hide
Query:  QLSSNFFGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQARVRVADSSNSSEANGKYIVDIFGQTHPSVANEIFDCMNCGRSIMAGRFAPHLE
        QLSSN FGDLLDSVIVD+ASECHRIARLGLDRNLEEEEEELRLSAQARVRVADSSNSSEANGKY+VDIFGQTHPSVANEIFDCMNCGRSIMAGRFAPHLE
Subjt:  QLSSNFFGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQARVRVADSSNSSEANGKYIVDIFGQTHPSVANEIFDCMNCGRSIMAGRFAPHLE

Query:  KCMGRGRKARLKVTRSSTAAQGRYSRGSPVPAYSPYTSSPGANRLPNGMSGVAGEEYSNGTSEDP
        KCMGRGRKAR KVTRSSTAAQ RYSRG+PV AYSPY++S   NRL NG S +AGEEYSNG SEDP
Subjt:  KCMGRGRKARLKVTRSSTAAQGRYSRGSPVPAYSPYTSSPGANRLPNGMSGVAGEEYSNGTSEDP

TrEMBL top hitse value%identityAlignment
A0A0A0LYA8 SAGA-associated factor 119.0e-7790.91Show/hide
Query:  QLSSNFFGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQARVRVADSSNSSEANGKYIVDIFGQTHPSVANEIFDCMNCGRSIMAGRFAPHLE
        QLSSN FGDLLDSVIVD+ASECHRIARLGLDRNLEEEEEELRLSAQARVRVADSSNSSEANGKY+VDIFGQTHPSVANEIFDCMNCGRSIMAGRFAPHLE
Subjt:  QLSSNFFGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQARVRVADSSNSSEANGKYIVDIFGQTHPSVANEIFDCMNCGRSIMAGRFAPHLE

Query:  KCMGRGRKARLKVTRSSTAAQGRYSRGSPVPAYSPYTSSPGANRLPNGMSGVAGEEYSNGTSEDP
        KCMGRGRKAR KVTRSSTAAQ RYSRG+PV AYSPY +S   NRLPNG S +AGEEYSNGTSEDP
Subjt:  KCMGRGRKARLKVTRSSTAAQGRYSRGSPVPAYSPYTSSPGANRLPNGMSGVAGEEYSNGTSEDP

A0A1S3C599 SAGA-associated factor 116.9e-7791.52Show/hide
Query:  QLSSNFFGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQARVRVADSSNSSEANGKYIVDIFGQTHPSVANEIFDCMNCGRSIMAGRFAPHLE
        QLSSN FGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQARVRVADSSNSSEANGKY+VDIFGQTHPSVANEIFDCMNCGRSIMAGRFAPHLE
Subjt:  QLSSNFFGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQARVRVADSSNSSEANGKYIVDIFGQTHPSVANEIFDCMNCGRSIMAGRFAPHLE

Query:  KCMGRGRKARLKVTRSSTAAQGRYSRGSPVPAYSPYTSSPGANRLPNGMSGVAGEEYSNGTSEDP
        KCMGRGRKAR KVTRSSTAAQ RYSRG+PV AYSPY +S   NRLPNG S +AGEEYSNGTSEDP
Subjt:  KCMGRGRKARLKVTRSSTAAQGRYSRGSPVPAYSPYTSSPGANRLPNGMSGVAGEEYSNGTSEDP

A0A5D3BBT0 SAGA-associated factor 112.7e-7391.19Show/hide
Query:  QLSSNFFGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQARVRVADSSNSSEANGKYIVDIFGQTHPSVANEIFDCMNCGRSIMAGRFAPHLE
        QLSSN FGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQARVRVADSSNSSEANGKY+VDIFGQTHPSVANEIFDCMNCGRSIMAGRFAPHLE
Subjt:  QLSSNFFGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQARVRVADSSNSSEANGKYIVDIFGQTHPSVANEIFDCMNCGRSIMAGRFAPHLE

Query:  KCMGRGRKARLKVTRSSTAAQGRYSRGSPVPAYSPYTSSPGANRLPNGMSGVAGEEYSN
        KCMGRGRKAR KVTRSSTAAQ RYSRG+PV AYSPY +S   NRLPNG S +AGEEYSN
Subjt:  KCMGRGRKARLKVTRSSTAAQGRYSRGSPVPAYSPYTSSPGANRLPNGMSGVAGEEYSN

A0A6J1DBL8 SAGA-associated factor 113.1e-8598.8Show/hide
Query:  YLQLSSNFFGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQARVRVADSSNSSEANGKYIVDIFGQTHPSVANEIFDCMNCGRSIMAGRFAPH
        + QLSSNFFGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQARVRVADSSNSSEANGKYIVDIFGQTHPSVANEIFDCMNCGRSIMAGRFAPH
Subjt:  YLQLSSNFFGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQARVRVADSSNSSEANGKYIVDIFGQTHPSVANEIFDCMNCGRSIMAGRFAPH

Query:  LEKCMGRGRKARLKVTRSSTAAQGRYSRGSPVPAYSPYTSSPGANRLPNGMSGVAGEEYSNGTSEDP
        LEKCMGRGRKARLKVTRSSTAAQGRYSRGSPVPAYSPYTSSPGANRLPNGMSGVAGEEYSNGTSEDP
Subjt:  LEKCMGRGRKARLKVTRSSTAAQGRYSRGSPVPAYSPYTSSPGANRLPNGMSGVAGEEYSNGTSEDP

A0A6J1GAV8 SAGA-associated factor 116.1e-7387.88Show/hide
Query:  QLSSNFFGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQARVRVADSSNSSEANGKYIVDIFGQTHPSVANEIFDCMNCGRSIMAGRFAPHLE
        QLSSNFFGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQARVRVADSSNSSEANGKY+VDIFGQ HPSVA+EIFDCMNCGRSI+AGRFAPHLE
Subjt:  QLSSNFFGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQARVRVADSSNSSEANGKYIVDIFGQTHPSVANEIFDCMNCGRSIMAGRFAPHLE

Query:  KCMGRGRKARLKVTRSSTAAQGRYSRGSPVPAYSPYTSSPGANRLPNGMSGVAGEEYSNGTSEDP
        KCMGRGRKARLKVTRSSTA Q RYSRGS V AYSPY +S   NRLPNG S +AG EYSNG S +P
Subjt:  KCMGRGRKARLKVTRSSTAAQGRYSRGSPVPAYSPYTSSPGANRLPNGMSGVAGEEYSNGTSEDP

SwissProt top hitse value%identityAlignment
A1L209 Ataxin-7-like protein 33.9e-0833.33Show/hide
Query:  LSSNFFGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQARVRVADSSNSSEANGKYIVDIFGQTHPSVANEIFDCMNCGRSIMAGRFAPHLEK
        L+ + + DL++   + +  E HR  + G     E ++E ++        + D            VDIFGQ +    N+   C NC RSI A RFAPHLEK
Subjt:  LSSNFFGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQARVRVADSSNSSEANGKYIVDIFGQTHPSVANEIFDCMNCGRSIMAGRFAPHLEK

Query:  CMGRGRKA
        C+G GR +
Subjt:  CMGRGRKA

B1PM81 SAGA-associated factor 11 homolog3.6e-0629.79Show/hide
Query:  QLSSNFFGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQARVRVADSSNSSEANGKYIVDIFGQTHPSVANEIFDCM--NCGRSIMAGRFAPH
        + ++  +  LLD  +V V  E H + + G   NL   +      ++   R+ D  N          DIFG    S A +  DC   NC R + A RFAPH
Subjt:  QLSSNFFGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQARVRVADSSNSSEANGKYIVDIFGQTHPSVANEIFDCM--NCGRSIMAGRFAPH

Query:  LEKCMGRGRKARLKVTRSSTAAQGRYSRGSPVPAYSPYTSS
        LEKCMG GR +    +R     +   +  S   +Y   T++
Subjt:  LEKCMGRGRKARLKVTRSSTAAQGRYSRGSPVPAYSPYTSS

B4KY72 SAGA-associated factor 11 homolog9.5e-0732.12Show/hide
Query:  LQLSSNF-FGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQARVRVADSSNSSEANGKYIVDIFGQTHPSVANEIFDCM--NCGRSIMAGRFA
        L+ ++N+ F  LLD V+  +  E H + + G    L+   EE   +A++  R+ +  N         +DIFG    S A +  DC   +C R + A RFA
Subjt:  LQLSSNF-FGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQARVRVADSSNSSEANGKYIVDIFGQTHPSVANEIFDCM--NCGRSIMAGRFA

Query:  PHLEKCMGRGRKARLKVTRSSTAAQGRYSRGSPVPAY
        PHLEKCMG GR +    +R     +G  +  S    Y
Subjt:  PHLEKCMGRGRKARLKVTRSSTAAQGRYSRGSPVPAY

B4LDA6 SAGA-associated factor 11 homolog9.5e-0732.56Show/hide
Query:  FGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQARVRVADSSNSSEANGKYIVDIFGQTHPSVANEIFDCM--NCGRSIMAGRFAPHLEKCMG
        F  LLD V+  +  E H + + G    L+   EE   +A++  R+ +  N         +DIFG    S A +  DC   NC R + A RFAPHLEKCMG
Subjt:  FGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQARVRVADSSNSSEANGKYIVDIFGQTHPSVANEIFDCM--NCGRSIMAGRFAPHLEKCMG

Query:  RGRKARLKVTRSSTAAQGRYSRGSPVPAY
         GR +    +R     +G  +  +    Y
Subjt:  RGRKARLKVTRSSTAAQGRYSRGSPVPAY

Q94BV2 SAGA-associated factor 111.3e-5668.1Show/hide
Query:  YLQLSSNFFGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQARVRVADSSNSSEANGKYIVDIFGQTHPSVANEIFDCMNCGRSIMAGRFAPH
        + QLSS  F DL+DSVI DVASECHR+ARLGLDR+L+  EEELRLS +AR ++AD SN+ E N KY+VDIFGQTHP VA+E+F+CMNCGR I+AGRFAPH
Subjt:  YLQLSSNFFGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQARVRVADSSNSSEANGKYIVDIFGQTHPSVANEIFDCMNCGRSIMAGRFAPH

Query:  LEKCMGRGRKARLKVTRSSTAAQGRYSRGSPVPAYSPYTSSPGANRLPNGMSGVAGEEYSNGT
        LEKCMG+GRKAR K TRS+TAAQ R +R SP P YSPY +S   N+L +G  GVAGE+ SN T
Subjt:  LEKCMGRGRKARLKVTRSSTAAQGRYSRGSPVPAYSPYTSSPGANRLPNGMSGVAGEEYSNGT

Arabidopsis top hitse value%identityAlignment
AT5G58575.1 CONTAINS InterPro DOMAIN/s: Sgf11, transcriptional regulation (InterPro:IPR013246); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).9.3e-5868.1Show/hide
Query:  YLQLSSNFFGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQARVRVADSSNSSEANGKYIVDIFGQTHPSVANEIFDCMNCGRSIMAGRFAPH
        + QLSS  F DL+DSVI DVASECHR+ARLGLDR+L+  EEELRLS +AR ++AD SN+ E N KY+VDIFGQTHP VA+E+F+CMNCGR I+AGRFAPH
Subjt:  YLQLSSNFFGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQARVRVADSSNSSEANGKYIVDIFGQTHPSVANEIFDCMNCGRSIMAGRFAPH

Query:  LEKCMGRGRKARLKVTRSSTAAQGRYSRGSPVPAYSPYTSSPGANRLPNGMSGVAGEEYSNGT
        LEKCMG+GRKAR K TRS+TAAQ R +R SP P YSPY +S   N+L +G  GVAGE+ SN T
Subjt:  LEKCMGRGRKARLKVTRSSTAAQGRYSRGSPVPAYSPYTSSPGANRLPNGMSGVAGEEYSNGT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTACTTCTGTTGCTTTCCACTTTATATTTGCAGCTTTCATCTAATTTCTTTGGGGATCTCCTGGATTCCGTGATTGTTGATGTTGCATCGGAGTGTCATCGAATAGC
AAGGTTAGGTCTTGATCGAAACTTAGAAGAGGAAGAAGAAGAATTAAGACTTTCAGCACAGGCACGAGTAAGAGTAGCTGATTCTAGCAATAGTAGTGAAGCAAACGGCA
AATATATAGTTGATATTTTTGGACAAACTCACCCTTCTGTTGCGAATGAAATATTTGATTGTATGAATTGTGGTCGATCAATCATGGCTGGGAGATTTGCCCCTCATTTA
GAGAAGTGCATGGGAAGGGGTAGAAAGGCTCGTCTCAAAGTAACAAGAAGTAGTACAGCTGCACAGGGCCGGTATTCTCGAGGCAGTCCTGTTCCTGCATATTCCCCTTA
CACTAGTTCCCCTGGCGCAAACCGGTTACCTAATGGAATGTCCGGTGTTGCAGGCGAGGAGTACTCAAACGGTACATCCGAAGACCCA
mRNA sequenceShow/hide mRNA sequence
ATGGTACTTCTGTTGCTTTCCACTTTATATTTGCAGCTTTCATCTAATTTCTTTGGGGATCTCCTGGATTCCGTGATTGTTGATGTTGCATCGGAGTGTCATCGAATAGC
AAGGTTAGGTCTTGATCGAAACTTAGAAGAGGAAGAAGAAGAATTAAGACTTTCAGCACAGGCACGAGTAAGAGTAGCTGATTCTAGCAATAGTAGTGAAGCAAACGGCA
AATATATAGTTGATATTTTTGGACAAACTCACCCTTCTGTTGCGAATGAAATATTTGATTGTATGAATTGTGGTCGATCAATCATGGCTGGGAGATTTGCCCCTCATTTA
GAGAAGTGCATGGGAAGGGGTAGAAAGGCTCGTCTCAAAGTAACAAGAAGTAGTACAGCTGCACAGGGCCGGTATTCTCGAGGCAGTCCTGTTCCTGCATATTCCCCTTA
CACTAGTTCCCCTGGCGCAAACCGGTTACCTAATGGAATGTCCGGTGTTGCAGGCGAGGAGTACTCAAACGGTACATCCGAAGACCCA
Protein sequenceShow/hide protein sequence
MVLLLLSTLYLQLSSNFFGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQARVRVADSSNSSEANGKYIVDIFGQTHPSVANEIFDCMNCGRSIMAGRFAPHL
EKCMGRGRKARLKVTRSSTAAQGRYSRGSPVPAYSPYTSSPGANRLPNGMSGVAGEEYSNGTSEDP