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MS023574 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS023574
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold1258:285919..286128
RNA-Seq ExpressionMS023574
SyntenyMS023574
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0015074 - DNA integration (biological process)
GO:0005840 - ribosome (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
InterPro domainsIPR022546 - Uncharacterised protein family Ycf68


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GEX76084.1 DNA polymerase-like [Tanacetum cinerariifolium]4.1e-2788.57Show/hide
Query:  ASYPVVWYLVGLIRRSAKTAPKQTTKRCVPHSRGIASDILEEGGDDVKSAWPLWAGPHTCYNGNYNGKQG
        AS PVVWY+VGL+ R AKTAPKQ TKRCVPHSR  ASDILEEGGDDVKSAWPLWAGPHTCYNGNYNGKQG
Subjt:  ASYPVVWYLVGLIRRSAKTAPKQTTKRCVPHSRGIASDILEEGGDDVKSAWPLWAGPHTCYNGNYNGKQG
KAG8362786.1 hypothetical protein BUALT_BualtUnG0044000 [Buddleja alternifolia]2.3e-2586.57Show/hide
Query:  PVVWYLVGLIRRSAKTAPKQTTKRCVPHSRGIASDILEEGGDDVKSAWPLWAGPHTCYNGNYNGKQG
        PVVWY+VGL+ R AKTAPK+  KRCVPHSR  ASDILEEGGDDVKSAWPLWAGPHTCYNGNYNGKQG
Subjt:  PVVWYLVGLIRRSAKTAPKQTTKRCVPHSRGIASDILEEGGDDVKSAWPLWAGPHTCYNGNYNGKQG
KAG8363149.1 hypothetical protein BUALT_BualtMtG0001200 [Buddleja alternifolia]2.3e-2586.57Show/hide
Query:  PVVWYLVGLIRRSAKTAPKQTTKRCVPHSRGIASDILEEGGDDVKSAWPLWAGPHTCYNGNYNGKQG
        PVVWY+VGL+ R AKTAPK+  KRCVPHSR  ASDILEEGGDDVKSAWPLWAGPHTCYNGNYNGKQG
Subjt:  PVVWYLVGLIRRSAKTAPKQTTKRCVPHSRGIASDILEEGGDDVKSAWPLWAGPHTCYNGNYNGKQG
PLY62414.1 hypothetical protein LSAT_5X16680 [Lactuca sativa]4.1e-2788.57Show/hide
Query:  ASYPVVWYLVGLIRRSAKTAPKQTTKRCVPHSRGIASDILEEGGDDVKSAWPLWAGPHTCYNGNYNGKQG
        AS PVVWY+VGL+ R AKTAPKQ TKRCVPHSR  ASDILEEGGDDVKSAWPLWAGPHTCYNGNYNGKQG
Subjt:  ASYPVVWYLVGLIRRSAKTAPKQTTKRCVPHSRGIASDILEEGGDDVKSAWPLWAGPHTCYNGNYNGKQG
PLY81935.1 hypothetical protein LSAT_5X16200 [Lactuca sativa]4.1e-2788.57Show/hide
Query:  ASYPVVWYLVGLIRRSAKTAPKQTTKRCVPHSRGIASDILEEGGDDVKSAWPLWAGPHTCYNGNYNGKQG
        AS PVVWY+VGL+ R AKTAPKQ TKRCVPHSR  ASDILEEGGDDVKSAWPLWAGPHTCYNGNYNGKQG
Subjt:  ASYPVVWYLVGLIRRSAKTAPKQTTKRCVPHSRGIASDILEEGGDDVKSAWPLWAGPHTCYNGNYNGKQG
TrEMBL top hitse value%identityAlignment
A0A2J6JHW2 Uncharacterized protein ycf682.0e-2788.57Show/hide
Query:  ASYPVVWYLVGLIRRSAKTAPKQTTKRCVPHSRGIASDILEEGGDDVKSAWPLWAGPHTCYNGNYNGKQG
        AS PVVWY+VGL+ R AKTAPKQ TKRCVPHSR  ASDILEEGGDDVKSAWPLWAGPHTCYNGNYNGKQG
Subjt:  ASYPVVWYLVGLIRRSAKTAPKQTTKRCVPHSRGIASDILEEGGDDVKSAWPLWAGPHTCYNGNYNGKQG
A0A2J6L3N0 Uncharacterized protein ycf682.0e-2788.57Show/hide
Query:  ASYPVVWYLVGLIRRSAKTAPKQTTKRCVPHSRGIASDILEEGGDDVKSAWPLWAGPHTCYNGNYNGKQG
        AS PVVWY+VGL+ R AKTAPKQ TKRCVPHSR  ASDILEEGGDDVKSAWPLWAGPHTCYNGNYNGKQG
Subjt:  ASYPVVWYLVGLIRRSAKTAPKQTTKRCVPHSRGIASDILEEGGDDVKSAWPLWAGPHTCYNGNYNGKQG
A0A4D8Y8D7 Uncharacterized protein ycf683.2e-2585.07Show/hide
Query:  PVVWYLVGLIRRSAKTAPKQTTKRCVPHSRGIASDILEEGGDDVKSAWPLWAGPHTCYNGNYNGKQG
        PVVWY+VGL+ R AKTAPK+  KRCVPHSR   SDILEEGGDDVKSAWPLWAGPHTCYNGNYNGKQG
Subjt:  PVVWYLVGLIRRSAKTAPKQTTKRCVPHSRGIASDILEEGGDDVKSAWPLWAGPHTCYNGNYNGKQG
A0A5A7V4U9 Uncharacterized protein ycf686.0e-2480Show/hide
Query:  ASYPVVWYLVGLIRRSAKTAPKQTTKRCVPHSRGIASDILEEGGDDVKSAWPLWAGPHTCYNGNYNGKQG
        AS+PVVWY VGL+ R AKT P   ++RCVPHSRG AS+ILEEGGDDVKSAWPLWAGPHTCYNGN NGKQG
Subjt:  ASYPVVWYLVGLIRRSAKTAPKQTTKRCVPHSRGIASDILEEGGDDVKSAWPLWAGPHTCYNGNYNGKQG
A0A7C9CIC3 Uncharacterized protein ycf68 (Fragment)1.0e-2396.43Show/hide
Query:  RSAKTAPKQTTKRCVPHSRGIASDILEEGGDDVKSAWPLWAGPHTCYNGNYNGKQG
        RSAKTAPKQ TKRCVPHSRG ASDILEEGGDDVKSAWPLWAGPHTCYNGNYNGKQG
Subjt:  RSAKTAPKQTTKRCVPHSRGIASDILEEGGDDVKSAWPLWAGPHTCYNGNYNGKQG
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GCGAGCTACCCGGTGGTGTGGTACCTAGTGGGTTTAATACGCCGCTCTGCCAAAACGGCTCCGAAACAAACAACAAAAAGGTGTGTGCCGCACTCAAGAGGGATTGCCAG
TGATATACTCGAGGAAGGTGGGGATGATGTCAAGTCCGCATGGCCCTTATGGGCTGGGCCACACACATGCTACAATGGCAATTACAATGGGAAGCAAGGT
mRNA sequenceShow/hide mRNA sequence
GCGAGCTACCCGGTGGTGTGGTACCTAGTGGGTTTAATACGCCGCTCTGCCAAAACGGCTCCGAAACAAACAACAAAAAGGTGTGTGCCGCACTCAAGAGGGATTGCCAG
TGATATACTCGAGGAAGGTGGGGATGATGTCAAGTCCGCATGGCCCTTATGGGCTGGGCCACACACATGCTACAATGGCAATTACAATGGGAAGCAAGGT
Protein sequenceShow/hide protein sequence
ASYPVVWYLVGLIRRSAKTAPKQTTKRCVPHSRGIASDILEEGGDDVKSAWPLWAGPHTCYNGNYNGKQG