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MS023590 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS023590
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationscaffold155:43466..43810
RNA-Seq ExpressionMS023590
SyntenyMS023590
Gene Ontology termsGO:0009987 - cellular process (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
BBN69746.1 VIRB2-interacting protein 2 [Prunus dulcis]3.2e-1639.5Show/hide
Query:  RQRCKLRWLKEGDMNTGFFHRVVAARRRKSSIIELLSRDGKSLVNDTEIELE----FLSLYSKKEGTRFLPHPINWDTITQQQSSLLEAPFLETEVWQAI
        RQR K++W ++GD NT FFHR+ + RR+++ I +L    G  +V++ EIELE    F +LYS      +    +NW+ I+ +++  L+ PF E EV +A+
Subjt:  RQRCKLRWLKEGDMNTGFFHRVVAARRRKSSIIELLSRDGKSLVNDTEIELE----FLSLYSKKEGTRFLPHPINWDTITQQQSSLLEAPFLETEVWQAI

Query:  KDLGTNKTPGPNGFIAKFF
         D G +K+PGP+GF    F
Subjt:  KDLGTNKTPGPNGFIAKFF

TYK01560.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.1e-1645.13Show/hide
Query:  QRCKLRWLKEGDMNTGFFHRVVAARRRKSSIIELLSRDGKSLVNDTEIELEFLSLYSKKEGTR----FLPHPINWDTITQQQSSLLEAPFLETEVWQAIK
        ++C L+W  EG+ N  FFHR ++AR+ KS I  L+S DG++LV   EI  E LSL S   GT+    F+    NW T+    SS LEAPF E E+  A+ 
Subjt:  QRCKLRWLKEGDMNTGFFHRVVAARRRKSSIIELLSRDGKSLVNDTEIELEFLSLYSKKEGTR----FLPHPINWDTITQQQSSLLEAPFLETEVWQAIK

Query:  DLGTNKTPGPNGF
        ++G  K+PGP+GF
Subjt:  DLGTNKTPGPNGF

XP_038884535.1 DEAD-box ATP-dependent RNA helicase FANCM isoform X1 [Benincasa hispida]2.2e-1746.15Show/hide
Query:  QRCKLRWLKEGDMNTGFFHRVVAARRRKSSIIELLSRDGKSLVNDTEIE---LEFLS-LYSKKEGTRFLPHPINWDTITQQQSSLLEAPFLETEVWQAIK
        Q+ KL WL  GD NT FFHR +AA+RRK+ I EL +  G    +  EIE   L+F S LY+K  GTR +P  + W  ++ + +S L A F  TE+  AI+
Subjt:  QRCKLRWLKEGDMNTGFFHRVVAARRRKSSIIELLSRDGKSLVNDTEIE---LEFLS-LYSKKEGTRFLPHPINWDTITQQQSSLLEAPFLETEVWQAIK

Query:  DLGTNKTPGPNGFIAKF
         LG NK PGP+GF  +F
Subjt:  DLGTNKTPGPNGFIAKF

XP_038884536.1 DEAD-box ATP-dependent RNA helicase FANCM isoform X2 [Benincasa hispida]2.2e-1746.15Show/hide
Query:  QRCKLRWLKEGDMNTGFFHRVVAARRRKSSIIELLSRDGKSLVNDTEIE---LEFLS-LYSKKEGTRFLPHPINWDTITQQQSSLLEAPFLETEVWQAIK
        Q+ KL WL  GD NT FFHR +AA+RRK+ I EL +  G    +  EIE   L+F S LY+K  GTR +P  + W  ++ + +S L A F  TE+  AI+
Subjt:  QRCKLRWLKEGDMNTGFFHRVVAARRRKSSIIELLSRDGKSLVNDTEIE---LEFLS-LYSKKEGTRFLPHPINWDTITQQQSSLLEAPFLETEVWQAIK

Query:  DLGTNKTPGPNGFIAKF
         LG NK PGP+GF  +F
Subjt:  DLGTNKTPGPNGFIAKF

XP_038884537.1 DEAD-box ATP-dependent RNA helicase FANCM isoform X3 [Benincasa hispida]2.2e-1746.15Show/hide
Query:  QRCKLRWLKEGDMNTGFFHRVVAARRRKSSIIELLSRDGKSLVNDTEIE---LEFLS-LYSKKEGTRFLPHPINWDTITQQQSSLLEAPFLETEVWQAIK
        Q+ KL WL  GD NT FFHR +AA+RRK+ I EL +  G    +  EIE   L+F S LY+K  GTR +P  + W  ++ + +S L A F  TE+  AI+
Subjt:  QRCKLRWLKEGDMNTGFFHRVVAARRRKSSIIELLSRDGKSLVNDTEIE---LEFLS-LYSKKEGTRFLPHPINWDTITQQQSSLLEAPFLETEVWQAIK

Query:  DLGTNKTPGPNGFIAKF
         LG NK PGP+GF  +F
Subjt:  DLGTNKTPGPNGFIAKF

TrEMBL top hitse value%identityAlignment
A0A4Y1R3V4 VIRB2-interacting protein 21.5e-1639.5Show/hide
Query:  RQRCKLRWLKEGDMNTGFFHRVVAARRRKSSIIELLSRDGKSLVNDTEIELE----FLSLYSKKEGTRFLPHPINWDTITQQQSSLLEAPFLETEVWQAI
        RQR K++W ++GD NT FFHR+ + RR+++ I +L    G  +V++ EIELE    F +LYS      +    +NW+ I+ +++  L+ PF E EV +A+
Subjt:  RQRCKLRWLKEGDMNTGFFHRVVAARRRKSSIIELLSRDGKSLVNDTEIELE----FLSLYSKKEGTRFLPHPINWDTITQQQSSLLEAPFLETEVWQAI

Query:  KDLGTNKTPGPNGFIAKFF
         D G +K+PGP+GF    F
Subjt:  KDLGTNKTPGPNGFIAKFF

A0A5D3BR42 LINE-1 retrotransposable element ORF2 protein5.3e-1745.13Show/hide
Query:  QRCKLRWLKEGDMNTGFFHRVVAARRRKSSIIELLSRDGKSLVNDTEIELEFLSLYSKKEGTR----FLPHPINWDTITQQQSSLLEAPFLETEVWQAIK
        ++C L+W  EG+ N  FFHR ++AR+ KS I  L+S DG++LV   EI  E LSL S   GT+    F+    NW T+    SS LEAPF E E+  A+ 
Subjt:  QRCKLRWLKEGDMNTGFFHRVVAARRRKSSIIELLSRDGKSLVNDTEIELEFLSLYSKKEGTR----FLPHPINWDTITQQQSSLLEAPFLETEVWQAIK

Query:  DLGTNKTPGPNGF
        ++G  K+PGP+GF
Subjt:  DLGTNKTPGPNGF

A0A5E4GN72 PREDICTED: RNA-directed DNA polymerase (Fragment)1.5e-1639.5Show/hide
Query:  RQRCKLRWLKEGDMNTGFFHRVVAARRRKSSIIELLSRDGKSLVNDTEIELE----FLSLYSKKEGTRFLPHPINWDTITQQQSSLLEAPFLETEVWQAI
        RQR K++W ++GD NT FFHR+ + RR+++ I +L    G  +V++ EIELE    F +LYS      +    +NW+ I+ +++  L+ PF E EV +A+
Subjt:  RQRCKLRWLKEGDMNTGFFHRVVAARRRKSSIIELLSRDGKSLVNDTEIELE----FLSLYSKKEGTRFLPHPINWDTITQQQSSLLEAPFLETEVWQAI

Query:  KDLGTNKTPGPNGFIAKFF
         D G +K+PGP+GF    F
Subjt:  KDLGTNKTPGPNGFIAKFF

A0A7C9EEG0 Reverse transcriptase domain-containing protein (Fragment)1.2e-1642.02Show/hide
Query:  RQRCKLRWLKEGDMNTGFFHRVVAARRRKSSIIELLSRDGKSLVNDTEIELEFL----SLYSKKEGTRFLPHPINWDTITQQQSSLLEAPFLETEVWQAI
        RQR K  WL++GD NT FFHR VA  RRK + IE +  +G   V+D+ ++   +     LY +   +R     I++ +I+Q+ +  LE  F E EVW+AI
Subjt:  RQRCKLRWLKEGDMNTGFFHRVVAARRRKSSIIELLSRDGKSLVNDTEIELEFL----SLYSKKEGTRFLPHPINWDTITQQQSSLLEAPFLETEVWQAI

Query:  KDLGTNKTPGPNGFIAKFF
         DLG  K PGP+GF   FF
Subjt:  KDLGTNKTPGPNGFIAKFF

M5XUF8 Reverse transcriptase domain-containing protein (Fragment)1.2e-1640.34Show/hide
Query:  RQRCKLRWLKEGDMNTGFFHRVVAARRRKSSIIELLSRDGKSLVNDTEIELE----FLSLYSKKEGTRFLPHPINWDTITQQQSSLLEAPFLETEVWQAI
        RQR K++W ++GD NT FFHR+   RR+++ I +L       +VN+ EIELE    F +LYS      +    +NW+ I+ +++  LE PF E EV +A+
Subjt:  RQRCKLRWLKEGDMNTGFFHRVVAARRRKSSIIELLSRDGKSLVNDTEIELE----FLSLYSKKEGTRFLPHPINWDTITQQQSSLLEAPFLETEVWQAI

Query:  KDLGTNKTPGPNGFIAKFF
         D G +K+PGP+GF    F
Subjt:  KDLGTNKTPGPNGFIAKFF

SwissProt top hitse value%identityAlignment
P14381 Transposon TX1 uncharacterized 149 kDa protein1.7e-0426.02Show/hide
Query:  RCKLRWLKEGDMNTGFFHRVVAARRRKSSIIELLSRDGKSLVNDTEIELEFLSLYSKKEGTRFLPHPIN-------WD---TITQQQSSLLEAPFLETEV
        R +++ L + D  + FF+ +   +  +  I  L + DG  L +   I     S Y       F P PI+       WD    +++++   LE P    E+
Subjt:  RCKLRWLKEGDMNTGFFHRVVAARRRKSSIIELLSRDGKSLVNDTEIELEFLSLYSKKEGTRFLPHPIN-------WD---TITQQQSSLLEAPFLETEV

Query:  WQAIKDLGTNKTPGPNGFIAKFF
         QA++ +  NK+PG +G   +FF
Subjt:  WQAIKDLGTNKTPGPNGFIAKFF

Arabidopsis top hitse value%identityAlignment
AT1G43760.1 DNAse I-like superfamily protein2.1e-1030.47Show/hide
Query:  RQRCKLRWLKEGDMNTGFFHRVVAARRRKSSIIELLSRDGKSLVNDTEIELEFLSLYSKKEGTR---FLP---------HPINW-DTITQQQSSLLEAPF
        RQ+ +++WL++GD NT FFH+V+ A + K+ I  L   D   + N T+++   ++ Y+   G+      P         HP    DT+  + S+L     
Subjt:  RQRCKLRWLKEGDMNTGFFHRVVAARRRKSSIIELLSRDGKSLVNDTEIELEFLSLYSKKEGTR---FLP---------HPINW-DTITQQQSSLLEAPF

Query:  LETEVWQAIKDLGTNKTPGPNGFIAKFF
         + E+  A+  +  NK PGP+ F A+FF
Subjt:  LETEVWQAIKDLGTNKTPGPNGFIAKFF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AGACAACGGTGTAAGTTAAGGTGGCTCAAAGAGGGTGATATGAACACTGGCTTCTTTCATAGAGTGGTGGCTGCCAGACGCAGGAAAAGCTCCATTATTGAGCTCCTATC
TCGGGATGGCAAAAGCTTGGTTAATGACACAGAGATTGAGCTAGAGTTCCTATCTTTGTATTCCAAAAAAGAGGGCACTAGATTCCTGCCACATCCTATCAACTGGGACA
CCATTACACAGCAACAATCTTCCCTCCTCGAAGCACCCTTCCTTGAGACAGAGGTTTGGCAAGCTATTAAGGACCTAGGCACCAATAAAACCCCTGGACCCAACGGATTC
ATTGCCAAATTCTTT
mRNA sequenceShow/hide mRNA sequence
AGACAACGGTGTAAGTTAAGGTGGCTCAAAGAGGGTGATATGAACACTGGCTTCTTTCATAGAGTGGTGGCTGCCAGACGCAGGAAAAGCTCCATTATTGAGCTCCTATC
TCGGGATGGCAAAAGCTTGGTTAATGACACAGAGATTGAGCTAGAGTTCCTATCTTTGTATTCCAAAAAAGAGGGCACTAGATTCCTGCCACATCCTATCAACTGGGACA
CCATTACACAGCAACAATCTTCCCTCCTCGAAGCACCCTTCCTTGAGACAGAGGTTTGGCAAGCTATTAAGGACCTAGGCACCAATAAAACCCCTGGACCCAACGGATTC
ATTGCCAAATTCTTT
Protein sequenceShow/hide protein sequence
RQRCKLRWLKEGDMNTGFFHRVVAARRRKSSIIELLSRDGKSLVNDTEIELEFLSLYSKKEGTRFLPHPINWDTITQQQSSLLEAPFLETEVWQAIKDLGTNKTPGPNGF
IAKFF