; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS023591 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS023591
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationscaffold155:45362..46052
RNA-Seq ExpressionMS023591
SyntenyMS023591
Gene Ontology termsNA
InterPro domainsIPR026960 - Reverse transcriptase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAN70431.1 hypothetical protein VITISV_030910 [Vitis vinifera]4.5e-3036.8Show/hide
Query:  LKDAEIVELASLLHCLSSKQ--PSMNRDSIAWRPESHGSFTTSSLIKDLQSINTSSTPPDLY---RAIWKESYPKKIKFFLWEASHQALNTHDKLQRRMP
        L D+EI  L  L+  LSS +  PS+  DS AW   S G FT  S    L  ++     P L+   + +W    P K+K   W  +H  +NT+DKLQ R P
Subjt:  LKDAEIVELASLLHCLSSKQ--PSMNRDSIAWRPESHGSFTTSSLIKDLQSINTSSTPPDLY---RAIWKESYPKKIKFFLWEASHQALNTHDKLQRRMP

Query:  YMVLSPQWWPLCKQHSESIGHVFLTCPYTATLWNKLLPLFGWSAALPTNMSQLLRLLW-GHPFKKEKASLWIHFIRALLWTTWNERNRRIFQDLERTPHA
        Y  L PQW  LCK + ESI H+FL CP T  LWNKL  + G     P +   +L + + G        +LW      L+W  W ERN+RIF+D  R+   
Subjt:  YMVLSPQWWPLCKQHSESIGHVFLTCPYTATLWNKLLPLFGWSAALPTNMSQLLRLLW-GHPFKKEKASLWIHFIRALLWTTWNERNRRIFQDLERTPHA

Query:  TFESIVFLVITWCKCSPLFHSYSFASLLTNW
         ++ I+F    W  CS  F       L  NW
Subjt:  TFESIVFLVITWCKCSPLFHSYSFASLLTNW

KAA0039950.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]9.0e-3132.41Show/hide
Query:  LSSKQPSMNRDSIAWRPESHGSFTTSSLIKDLQS--INTSSTPPDLYRAIWKESYPKKIKFFLWEASHQALNTHDKLQRRMPYMVLSPQWWPLCKQHSES
        L +  P+       W   S+  F T+S+ + +    I+ ++  P+LY+ +WK  +PKK KFF+W   H  +NT D+LQ+R+P   LSP W  +C +  E 
Subjt:  LSSKQPSMNRDSIAWRPESHGSFTTSSLIKDLQS--INTSSTPPDLYRAIWKESYPKKIKFFLWEASHQALNTHDKLQRRMPYMVLSPQWWPLCKQHSES

Query:  IGHVFLTCPYTATLWNKLLPLFGWSAALPTNMSQLLRLLWGHPFKKEKASLWIHFIRALLWTTWNERNRRIFQDLERTPHATFESIVFLVITWCKCSPLF
        I H+F+ CPY+  LW+K   L  W++  PT++  L++ +     + +K  +  +    +LW  W ERN RIF+  E+ P   +E  +  +  W   S LF
Subjt:  IGHVFLTCPYTATLWNKLLPLFGWSAALPTNMSQLLRLLWGHPFKKEKASLWIHFIRALLWTTWNERNRRIFQDLERTPHATFESIVFLVITWCKCSPLF

Query:  HSYSFASLLTNWRAFL
         +Y   S+  N  AF+
Subjt:  HSYSFASLLTNWRAFL

KAA0041397.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]3.1e-3134.72Show/hide
Query:  LSSKQPSMNRDSIAWRPESHGSFTTSSLIKDLQSINTSST--PPDLYRAIWKESYPKKIKFFLWEASHQALNTHDKLQRRMPYMVLSPQWWPLCKQHSES
        L +  P        W+  S+  F T+S+ KDL   + S T   P LY+ +WK  +PKK KFF+W   H  +NT D+LQ+R+P   LSP W  +C +  E 
Subjt:  LSSKQPSMNRDSIAWRPESHGSFTTSSLIKDLQSINTSST--PPDLYRAIWKESYPKKIKFFLWEASHQALNTHDKLQRRMPYMVLSPQWWPLCKQHSES

Query:  IGHVFLTCPYTATLWNKLLPLFGWSAALPTNMSQLLRLLWGHPFKKEKASLWIHFIRALLWTTWNERNRRIFQDLERTPHATFESIVFLVITWCKCSPLF
        I H+F+ CPY+  LW+K   L  W++  P ++  L + +     K +K  +  + I  LLW  W ERN RIF+  ++     +E I+     W   S LF
Subjt:  IGHVFLTCPYTATLWNKLLPLFGWSAALPTNMSQLLRLLWGHPFKKEKASLWIHFIRALLWTTWNERNRRIFQDLERTPHATFESIVFLVITWCKCSPLF

Query:  HSYSFASLLTNWRAFL
         +Y   S+  N  AF+
Subjt:  HSYSFASLLTNWRAFL

KAA0044556.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]3.1e-3134.72Show/hide
Query:  LSSKQPSMNRDSIAWRPESHGSFTTSSLIKDLQSINTSST--PPDLYRAIWKESYPKKIKFFLWEASHQALNTHDKLQRRMPYMVLSPQWWPLCKQHSES
        L +  P        W+  S+  F T+S+ KDL   + S T   P LY+ +WK  +PKK KFF+W   H  +NT D+LQ+R+P   LSP W  +C +  E 
Subjt:  LSSKQPSMNRDSIAWRPESHGSFTTSSLIKDLQSINTSST--PPDLYRAIWKESYPKKIKFFLWEASHQALNTHDKLQRRMPYMVLSPQWWPLCKQHSES

Query:  IGHVFLTCPYTATLWNKLLPLFGWSAALPTNMSQLLRLLWGHPFKKEKASLWIHFIRALLWTTWNERNRRIFQDLERTPHATFESIVFLVITWCKCSPLF
        I H+F+ CPY+  LW+K   L  W++  P ++  L + +     K +K  +  + I  LLW  W ERN RIF+  ++     +E I+     W   S LF
Subjt:  IGHVFLTCPYTATLWNKLLPLFGWSAALPTNMSQLLRLLWGHPFKKEKASLWIHFIRALLWTTWNERNRRIFQDLERTPHATFESIVFLVITWCKCSPLF

Query:  HSYSFASLLTNWRAFL
         +Y   S+  N  AF+
Subjt:  HSYSFASLLTNWRAFL

RVW56165.1 Calcium-transporting ATPase 3, endoplasmic reticulum-type [Vitis vinifera]4.5e-3036.8Show/hide
Query:  LKDAEIVELASLLHCLSSKQ--PSMNRDSIAWRPESHGSFTTSSLIKDLQSINTSSTPPDLY---RAIWKESYPKKIKFFLWEASHQALNTHDKLQRRMP
        L D+EI  L  L+  LS+ +  PS+  DS AW   S G FT  S    L  ++     P+L+   + +W    P K+K   W  +H  +NT+DKLQ R P
Subjt:  LKDAEIVELASLLHCLSSKQ--PSMNRDSIAWRPESHGSFTTSSLIKDLQSINTSSTPPDLY---RAIWKESYPKKIKFFLWEASHQALNTHDKLQRRMP

Query:  YMVLSPQWWPLCKQHSESIGHVFLTCPYTATLWNKLLPLFGWSAALPTNMSQLLRLLW-GHPFKKEKASLWIHFIRALLWTTWNERNRRIFQDLERTPHA
        Y  L PQW  LCK + ESI H+FL CP T  LWNKL  L G     P +   +L + + G        +LW      L+W  W ERN+RIF+D  R+   
Subjt:  YMVLSPQWWPLCKQHSESIGHVFLTCPYTATLWNKLLPLFGWSAALPTNMSQLLRLLW-GHPFKKEKASLWIHFIRALLWTTWNERNRRIFQDLERTPHA

Query:  TFESIVFLVITWCKCSPLFHSYSFASLLTNW
         ++ I+F    W  CS  F       L  NW
Subjt:  TFESIVFLVITWCKCSPLFHSYSFASLLTNW

TrEMBL top hitse value%identityAlignment
A0A438F829 Calcium-transporting ATPase 3, endoplasmic reticulum-type2.2e-3036.8Show/hide
Query:  LKDAEIVELASLLHCLSSKQ--PSMNRDSIAWRPESHGSFTTSSLIKDLQSINTSSTPPDLY---RAIWKESYPKKIKFFLWEASHQALNTHDKLQRRMP
        L D+EI  L  L+  LS+ +  PS+  DS AW   S G FT  S    L  ++     P+L+   + +W    P K+K   W  +H  +NT+DKLQ R P
Subjt:  LKDAEIVELASLLHCLSSKQ--PSMNRDSIAWRPESHGSFTTSSLIKDLQSINTSSTPPDLY---RAIWKESYPKKIKFFLWEASHQALNTHDKLQRRMP

Query:  YMVLSPQWWPLCKQHSESIGHVFLTCPYTATLWNKLLPLFGWSAALPTNMSQLLRLLW-GHPFKKEKASLWIHFIRALLWTTWNERNRRIFQDLERTPHA
        Y  L PQW  LCK + ESI H+FL CP T  LWNKL  L G     P +   +L + + G        +LW      L+W  W ERN+RIF+D  R+   
Subjt:  YMVLSPQWWPLCKQHSESIGHVFLTCPYTATLWNKLLPLFGWSAALPTNMSQLLRLLW-GHPFKKEKASLWIHFIRALLWTTWNERNRRIFQDLERTPHA

Query:  TFESIVFLVITWCKCSPLFHSYSFASLLTNW
         ++ I+F    W  CS  F       L  NW
Subjt:  TFESIVFLVITWCKCSPLFHSYSFASLLTNW

A0A5A7T9I7 LINE-1 retrotransposable element ORF2 protein4.4e-3132.41Show/hide
Query:  LSSKQPSMNRDSIAWRPESHGSFTTSSLIKDLQS--INTSSTPPDLYRAIWKESYPKKIKFFLWEASHQALNTHDKLQRRMPYMVLSPQWWPLCKQHSES
        L +  P+       W   S+  F T+S+ + +    I+ ++  P+LY+ +WK  +PKK KFF+W   H  +NT D+LQ+R+P   LSP W  +C +  E 
Subjt:  LSSKQPSMNRDSIAWRPESHGSFTTSSLIKDLQS--INTSSTPPDLYRAIWKESYPKKIKFFLWEASHQALNTHDKLQRRMPYMVLSPQWWPLCKQHSES

Query:  IGHVFLTCPYTATLWNKLLPLFGWSAALPTNMSQLLRLLWGHPFKKEKASLWIHFIRALLWTTWNERNRRIFQDLERTPHATFESIVFLVITWCKCSPLF
        I H+F+ CPY+  LW+K   L  W++  PT++  L++ +     + +K  +  +    +LW  W ERN RIF+  E+ P   +E  +  +  W   S LF
Subjt:  IGHVFLTCPYTATLWNKLLPLFGWSAALPTNMSQLLRLLWGHPFKKEKASLWIHFIRALLWTTWNERNRRIFQDLERTPHATFESIVFLVITWCKCSPLF

Query:  HSYSFASLLTNWRAFL
         +Y   S+  N  AF+
Subjt:  HSYSFASLLTNWRAFL

A0A5A7TIB8 LINE-1 retrotransposable element ORF2 protein1.5e-3134.72Show/hide
Query:  LSSKQPSMNRDSIAWRPESHGSFTTSSLIKDLQSINTSST--PPDLYRAIWKESYPKKIKFFLWEASHQALNTHDKLQRRMPYMVLSPQWWPLCKQHSES
        L +  P        W+  S+  F T+S+ KDL   + S T   P LY+ +WK  +PKK KFF+W   H  +NT D+LQ+R+P   LSP W  +C +  E 
Subjt:  LSSKQPSMNRDSIAWRPESHGSFTTSSLIKDLQSINTSST--PPDLYRAIWKESYPKKIKFFLWEASHQALNTHDKLQRRMPYMVLSPQWWPLCKQHSES

Query:  IGHVFLTCPYTATLWNKLLPLFGWSAALPTNMSQLLRLLWGHPFKKEKASLWIHFIRALLWTTWNERNRRIFQDLERTPHATFESIVFLVITWCKCSPLF
        I H+F+ CPY+  LW+K   L  W++  P ++  L + +     K +K  +  + I  LLW  W ERN RIF+  ++     +E I+     W   S LF
Subjt:  IGHVFLTCPYTATLWNKLLPLFGWSAALPTNMSQLLRLLWGHPFKKEKASLWIHFIRALLWTTWNERNRRIFQDLERTPHATFESIVFLVITWCKCSPLF

Query:  HSYSFASLLTNWRAFL
         +Y   S+  N  AF+
Subjt:  HSYSFASLLTNWRAFL

A0A5A7TR15 LINE-1 retrotransposable element ORF2 protein1.5e-3134.72Show/hide
Query:  LSSKQPSMNRDSIAWRPESHGSFTTSSLIKDLQSINTSST--PPDLYRAIWKESYPKKIKFFLWEASHQALNTHDKLQRRMPYMVLSPQWWPLCKQHSES
        L +  P        W+  S+  F T+S+ KDL   + S T   P LY+ +WK  +PKK KFF+W   H  +NT D+LQ+R+P   LSP W  +C +  E 
Subjt:  LSSKQPSMNRDSIAWRPESHGSFTTSSLIKDLQSINTSST--PPDLYRAIWKESYPKKIKFFLWEASHQALNTHDKLQRRMPYMVLSPQWWPLCKQHSES

Query:  IGHVFLTCPYTATLWNKLLPLFGWSAALPTNMSQLLRLLWGHPFKKEKASLWIHFIRALLWTTWNERNRRIFQDLERTPHATFESIVFLVITWCKCSPLF
        I H+F+ CPY+  LW+K   L  W++  P ++  L + +     K +K  +  + I  LLW  W ERN RIF+  ++     +E I+     W   S LF
Subjt:  IGHVFLTCPYTATLWNKLLPLFGWSAALPTNMSQLLRLLWGHPFKKEKASLWIHFIRALLWTTWNERNRRIFQDLERTPHATFESIVFLVITWCKCSPLF

Query:  HSYSFASLLTNWRAFL
         +Y   S+  N  AF+
Subjt:  HSYSFASLLTNWRAFL

A5BQI4 Reverse transcriptase domain-containing protein2.2e-3036.8Show/hide
Query:  LKDAEIVELASLLHCLSSKQ--PSMNRDSIAWRPESHGSFTTSSLIKDLQSINTSSTPPDLY---RAIWKESYPKKIKFFLWEASHQALNTHDKLQRRMP
        L D+EI  L  L+  LSS +  PS+  DS AW   S G FT  S    L  ++     P L+   + +W    P K+K   W  +H  +NT+DKLQ R P
Subjt:  LKDAEIVELASLLHCLSSKQ--PSMNRDSIAWRPESHGSFTTSSLIKDLQSINTSSTPPDLY---RAIWKESYPKKIKFFLWEASHQALNTHDKLQRRMP

Query:  YMVLSPQWWPLCKQHSESIGHVFLTCPYTATLWNKLLPLFGWSAALPTNMSQLLRLLW-GHPFKKEKASLWIHFIRALLWTTWNERNRRIFQDLERTPHA
        Y  L PQW  LCK + ESI H+FL CP T  LWNKL  + G     P +   +L + + G        +LW      L+W  W ERN+RIF+D  R+   
Subjt:  YMVLSPQWWPLCKQHSESIGHVFLTCPYTATLWNKLLPLFGWSAALPTNMSQLLRLLW-GHPFKKEKASLWIHFIRALLWTTWNERNRRIFQDLERTPHA

Query:  TFESIVFLVITWCKCSPLFHSYSFASLLTNW
         ++ I+F    W  CS  F       L  NW
Subjt:  TFESIVFLVITWCKCSPLFHSYSFASLLTNW

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G09510.1 Ribonuclease H-like superfamily protein1.7e-1128.43Show/hide
Query:  LHCLSSKQPSMNRDSIAWRPESHGSFTTSS----LIKDLQSINTSSTPP----DLYRAIWKESYPKKIKFFLWEASHQALNTHDKLQRRMPYMVLSPQWW
        ++   SK+P    D I W   + G +T  S    L  D  +   +  PP    DL   IW      K+K FLW A  QAL T ++L  R   M + P   
Subjt:  LHCLSSKQPSMNRDSIAWRPESHGSFTTSS----LIKDLQSINTSSTPP----DLYRAIWKESYPKKIKFFLWEASHQALNTHDKLQRRMPYMVLSPQWW

Query:  PLCKQHSESIGHVFLTCPYTATLW----NKLLPLFGWSAALPTNMSQLLRLLWGHPFKKEKASLWIHFIRA--LLWTTWNERNRRIFQDLERTPHAT
        P C + +ESI H   TCP+    W    + L+     S     N+S +L       F ++      H +    L+W  W  RN  +F     +P  T
Subjt:  PLCKQHSESIGHVFLTCPYTATLW----NKLLPLFGWSAALPTNMSQLLRLLWGHPFKKEKASLWIHFIRA--LLWTTWNERNRRIFQDLERTPHAT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CTCAAGGACGCGGAGATTGTTGAGTTGGCTTCCCTTTTACACTGCCTTTCCTCAAAGCAACCATCTATGAATAGGGACTCCATTGCTTGGAGACCGGAATCCCATGGATC
CTTCACTACCAGCTCCCTCATCAAAGACCTCCAAAGCATCAACACATCATCTACTCCACCGGATCTTTATAGAGCAATTTGGAAGGAATCCTACCCAAAGAAGATTAAGT
TCTTCCTATGGGAAGCTAGCCACCAAGCATTGAATACTCACGACAAACTACAACGACGCATGCCATATATGGTCTTATCTCCACAATGGTGGCCTCTATGCAAGCAACAC
AGTGAGTCCATCGGACATGTATTCCTCACATGCCCCTACACAGCAACTCTTTGGAACAAACTCTTACCACTCTTTGGATGGTCGGCTGCCCTCCCCACCAATATGTCTCA
ATTGCTTCGACTCTTGTGGGGCCACCCATTCAAGAAAGAAAAAGCCAGCCTTTGGATCCACTTCATTCGGGCTCTTCTTTGGACTACATGGAATGAACGGAACCGTCGAA
TCTTCCAAGATTTGGAGCGCACACCACATGCCACTTTTGAATCCATTGTTTTTTTGGTCATTACTTGGTGTAAATGCTCCCCCCTCTTCCACTCGTATAGCTTTGCCTCC
TTATTGACAAATTGGAGAGCCTTTTTG
mRNA sequenceShow/hide mRNA sequence
CTCAAGGACGCGGAGATTGTTGAGTTGGCTTCCCTTTTACACTGCCTTTCCTCAAAGCAACCATCTATGAATAGGGACTCCATTGCTTGGAGACCGGAATCCCATGGATC
CTTCACTACCAGCTCCCTCATCAAAGACCTCCAAAGCATCAACACATCATCTACTCCACCGGATCTTTATAGAGCAATTTGGAAGGAATCCTACCCAAAGAAGATTAAGT
TCTTCCTATGGGAAGCTAGCCACCAAGCATTGAATACTCACGACAAACTACAACGACGCATGCCATATATGGTCTTATCTCCACAATGGTGGCCTCTATGCAAGCAACAC
AGTGAGTCCATCGGACATGTATTCCTCACATGCCCCTACACAGCAACTCTTTGGAACAAACTCTTACCACTCTTTGGATGGTCGGCTGCCCTCCCCACCAATATGTCTCA
ATTGCTTCGACTCTTGTGGGGCCACCCATTCAAGAAAGAAAAAGCCAGCCTTTGGATCCACTTCATTCGGGCTCTTCTTTGGACTACATGGAATGAACGGAACCGTCGAA
TCTTCCAAGATTTGGAGCGCACACCACATGCCACTTTTGAATCCATTGTTTTTTTGGTCATTACTTGGTGTAAATGCTCCCCCCTCTTCCACTCGTATAGCTTTGCCTCC
TTATTGACAAATTGGAGAGCCTTTTTG
Protein sequenceShow/hide protein sequence
LKDAEIVELASLLHCLSSKQPSMNRDSIAWRPESHGSFTTSSLIKDLQSINTSSTPPDLYRAIWKESYPKKIKFFLWEASHQALNTHDKLQRRMPYMVLSPQWWPLCKQH
SESIGHVFLTCPYTATLWNKLLPLFGWSAALPTNMSQLLRLLWGHPFKKEKASLWIHFIRALLWTTWNERNRRIFQDLERTPHATFESIVFLVITWCKCSPLFHSYSFAS
LLTNWRAFL