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MS023598 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS023598
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationscaffold155:133928..134187
RNA-Seq ExpressionMS023598
SyntenyMS023598
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036017.1 hypothetical protein E6C27_scaffold112G00020 [Cucumis melo var. makuwa]2.4e-0841.67Show/hide
Query:  KWSLYLHNRKEFVHGYGGCWLTIKDLPLYYWTQSTFDAIGMHFGGLLKVSKKLLTCW-MPPAFIKVEPNFCGFIPATMTITDEK
        +W    H+R      YG  WL IK L L YW +STF+ IG HFGGL  ++ + L    +  A I+V+   CGF+P+T+ IT+ K
Subjt:  KWSLYLHNRKEFVHGYGGCWLTIKDLPLYYWTQSTFDAIGMHFGGLLKVSKKLLTCW-MPPAFIKVEPNFCGFIPATMTITDEK

KAA0051433.1 hypothetical protein E6C27_scaffold55G001850 [Cucumis melo var. makuwa]2.1e-0951.43Show/hide
Query:  GYGGCWLTIKDLPLYYWTQSTFDAIGMHFGGLL-KVSKKLLTCWMPPAFIKVEPNFCGFIPATMTITDEK
        GYGG WL IK+LPL YW +ST + I  HFGGL  + S+ L    +  A+I+V+ N CGF+P T+ ITD K
Subjt:  GYGGCWLTIKDLPLYYWTQSTFDAIGMHFGGLL-KVSKKLLTCWMPPAFIKVEPNFCGFIPATMTITDEK

TYJ98837.1 putative 3,4-dihydroxy-2-butanone kinase isoform X5 [Cucumis melo var. makuwa]7.4e-1043.53Show/hide
Query:  KKWSLYLHNRKEFVHGYGGCWLTIKDLPLYYWTQSTFDAIGMHFGGLLKVSKKLLTCW-MPPAFIKVEPNFCGFIPATMTITDEK
        ++W    H+      GYGG WL IK+LPL YW +ST + IG HF GL  ++ + L    +  A I+V+ N CGF+P+T+ ITD K
Subjt:  KKWSLYLHNRKEFVHGYGGCWLTIKDLPLYYWTQSTFDAIGMHFGGLLKVSKKLLTCW-MPPAFIKVEPNFCGFIPATMTITDEK

XP_031738083.1 uncharacterized protein LOC116402658 [Cucumis sativus]2.5e-1045Show/hide
Query:  HNRKEFVHGYGGCWLTIKDLPLYYWTQSTFDAIGMHFGGLLKVSKKLLTCW-MPPAFIKVEPNFCGFIPATMTITDEKYG
        H+R   + GYGG WL +K+LPL  W++S F+AIG HFGG +K++ + L       A I+V+ N CGF+ +T  I+D K G
Subjt:  HNRKEFVHGYGGCWLTIKDLPLYYWTQSTFDAIGMHFGGLLKVSKKLLTCW-MPPAFIKVEPNFCGFIPATMTITDEKYG

XP_038904899.1 uncharacterized protein LOC120091119 isoform X2 [Benincasa hispida]2.0e-1545.98Show/hide
Query:  KKWSLYLHNRKEFVHGYGGCWLTIKDLPLYYWTQSTFDAIGMHFGGLLKVSKKLLT-CWMPPAFIKVEPNFCGFIPATMTITDEKYG
        ++W+  +H R  +V GYGG W++IK+LPL YW + TF+AIG +FGGL  ++ ++L    +  A IKV+ N CGF+PAT+ +++EK G
Subjt:  KKWSLYLHNRKEFVHGYGGCWLTIKDLPLYYWTQSTFDAIGMHFGGLLKVSKKLLT-CWMPPAFIKVEPNFCGFIPATMTITDEKYG

TrEMBL top hitse value%identityAlignment
A0A5A7T365 Uncharacterized protein1.1e-0841.67Show/hide
Query:  KWSLYLHNRKEFVHGYGGCWLTIKDLPLYYWTQSTFDAIGMHFGGLLKVSKKLLTCW-MPPAFIKVEPNFCGFIPATMTITDEK
        +W    H+R      YG  WL IK L L YW +STF+ IG HFGGL  ++ + L    +  A I+V+   CGF+P+T+ IT+ K
Subjt:  KWSLYLHNRKEFVHGYGGCWLTIKDLPLYYWTQSTFDAIGMHFGGLLKVSKKLLTCW-MPPAFIKVEPNFCGFIPATMTITDEK

A0A5A7U6A9 Uncharacterized protein1.0e-0951.43Show/hide
Query:  GYGGCWLTIKDLPLYYWTQSTFDAIGMHFGGLL-KVSKKLLTCWMPPAFIKVEPNFCGFIPATMTITDEK
        GYGG WL IK+LPL YW +ST + I  HFGGL  + S+ L    +  A+I+V+ N CGF+P T+ ITD K
Subjt:  GYGGCWLTIKDLPLYYWTQSTFDAIGMHFGGLL-KVSKKLLTCWMPPAFIKVEPNFCGFIPATMTITDEK

A0A5D3BI91 Putative 3,4-dihydroxy-2-butanone kinase isoform X53.6e-1043.53Show/hide
Query:  KKWSLYLHNRKEFVHGYGGCWLTIKDLPLYYWTQSTFDAIGMHFGGLLKVSKKLLTCW-MPPAFIKVEPNFCGFIPATMTITDEK
        ++W    H+      GYGG WL IK+LPL YW +ST + IG HF GL  ++ + L    +  A I+V+ N CGF+P+T+ ITD K
Subjt:  KKWSLYLHNRKEFVHGYGGCWLTIKDLPLYYWTQSTFDAIGMHFGGLLKVSKKLLTCW-MPPAFIKVEPNFCGFIPATMTITDEK

A0A5D3DJE1 DUF4283 domain-containing protein7.4e-0837.65Show/hide
Query:  KKWSLYLHNRKEFVHGYGGCWLTIKDLPLYYWTQSTFDAIGMHFGGLLKVSKKLLTCW-MPPAFIKVEPNFCGFIPATMTITDEK
        +KWS   H   + +  YGG W T + +PL+ W  +TF  IG   GGL+KV+++  +   +  A IKV  N+ GF+PA + I D +
Subjt:  KKWSLYLHNRKEFVHGYGGCWLTIKDLPLYYWTQSTFDAIGMHFGGLLKVSKKLLTCW-MPPAFIKVEPNFCGFIPATMTITDEK

A0A5D3DVS9 Uncharacterized protein2.6e-0843.75Show/hide
Query:  HNRKEFVHGYGGCWLTIKDLPLYYWTQSTFDAIGMHFGGLLKVSKKLLTCW-MPPAFIKVEPNFCGFIPATMTITDEKYG
        H+R   + GY G WL IK+LPL  W +STF+ IG H  GL+ ++ + L       A I+V+ N CGF+ +T  ITD K G
Subjt:  HNRKEFVHGYGGCWLTIKDLPLYYWTQSTFDAIGMHFGGLLKVSKKLLTCW-MPPAFIKVEPNFCGFIPATMTITDEKYG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AAAAAATGGAGTCTTTACCTGCATAATAGGAAAGAATTCGTTCACGGATATGGTGGCTGCTGGTTAACCATTAAAGACTTACCACTGTATTATTGGACTCAGTCAACCTT
TGATGCTATTGGAATGCACTTTGGTGGGCTGCTAAAAGTTTCTAAAAAACTCTTAACATGTTGGATGCCTCCTGCTTTCATCAAAGTTGAACCCAATTTTTGTGGGTTTA
TTCCGGCCACTATGACCATTACCGATGAGAAATATGGA
mRNA sequenceShow/hide mRNA sequence
AAAAAATGGAGTCTTTACCTGCATAATAGGAAAGAATTCGTTCACGGATATGGTGGCTGCTGGTTAACCATTAAAGACTTACCACTGTATTATTGGACTCAGTCAACCTT
TGATGCTATTGGAATGCACTTTGGTGGGCTGCTAAAAGTTTCTAAAAAACTCTTAACATGTTGGATGCCTCCTGCTTTCATCAAAGTTGAACCCAATTTTTGTGGGTTTA
TTCCGGCCACTATGACCATTACCGATGAGAAATATGGA
Protein sequenceShow/hide protein sequence
KKWSLYLHNRKEFVHGYGGCWLTIKDLPLYYWTQSTFDAIGMHFGGLLKVSKKLLTCWMPPAFIKVEPNFCGFIPATMTITDEKYG