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MS023602 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS023602
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon RE1
Genome locationscaffold155:346764..346977
RNA-Seq ExpressionMS023602
SyntenyMS023602
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0009987 - cellular process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GAU44375.1 hypothetical protein TSUD_243070 [Trifolium subterraneum]8.1e-0747.89Show/hide
Query:  SLKKNNMSIEEYVKKNLFLCNKLTAM-KNLDDLSKVFILARGLGSKYK-FKTTVLTKALYTMFNQFVIALK
        +L K N+S++EY++K   LC+KLTA+ K + D+ KVF +++GLG KYK F+  VL+K  Y  FNQF+++L+
Subjt:  SLKKNNMSIEEYVKKNLFLCNKLTAM-KNLDDLSKVFILARGLGSKYK-FKTTVLTKALYTMFNQFVIALK

PNX56937.1 hypothetical protein L195_g050142, partial [Trifolium pratense]3.1e-0647.14Show/hide
Query:  LKKNNMSIEEYVKKNLFLCNKLTAM-KNLDDLSKVFILARGLGSKYK-FKTTVLTKALYTMFNQFVIALK
        L K  +S+EEY++K   +C+KL A+ K L D+ KVF +++GLG+KYK FK  VL+K  Y +F+QF+++L+
Subjt:  LKKNNMSIEEYVKKNLFLCNKLTAM-KNLDDLSKVFILARGLGSKYK-FKTTVLTKALYTMFNQFVIALK

PNX82907.1 hypothetical protein L195_g038944, partial [Trifolium pratense]1.5e-0544.29Show/hide
Query:  LKKNNMSIEEYVKKNLFLCNKLTAM-KNLDDLSKVFILARGLGSKYK-FKTTVLTKALYTMFNQFVIALK
        + K ++S++EY++K   +C+KL A+ K L D+ KVF +++GLG+KYK F+  VL+K  Y  FNQF+++L+
Subjt:  LKKNNMSIEEYVKKNLFLCNKLTAM-KNLDDLSKVFILARGLGSKYK-FKTTVLTKALYTMFNQFVIALK

XP_015382865.1 uncharacterized protein LOC107175689 [Citrus sinensis]3.1e-0652.11Show/hide
Query:  SLKKNNMSIEEYVKKNLFLCNKLTAM-KNLDDLSKVFILARGLGSKY-KFKTTVLTKALYTMFNQFVIALK
        SLKK N  +EE++KK   LC+ LTA+ K + D  KVF LAR LG KY  FKT +LTK+ Y    QF++AL+
Subjt:  SLKKNNMSIEEYVKKNLFLCNKLTAM-KNLDDLSKVFILARGLGSKY-KFKTTVLTKALYTMFNQFVIALK

XP_022154021.1 uncharacterized protein LOC111021379 [Momordica charantia]9.2e-1159.72Show/hide
Query:  SLKKNNMSIEEYVKKNLFLCNKLTAMKN-LDDLSKVFILARGLGSKYK-FKTTVLTKALYTMFNQFVIALKA
        +LKK ++S++EY++K   LC++L AMK  LDDL+KVF LARGLG KYK F+T +L+KA Y  +NQFV+ALKA
Subjt:  SLKKNNMSIEEYVKKNLFLCNKLTAMKN-LDDLSKVFILARGLGSKYK-FKTTVLTKALYTMFNQFVIALKA

TrEMBL top hitse value%identityAlignment
A0A2C9VFN4 Uncharacterized protein1.1e-0647.89Show/hide
Query:  SLKKNNMSIEEYVKKNLFLCNKLTAMKN-LDDLSKVFILARGLGSKYK-FKTTVLTKALYTMFNQFVIALK
        ++KK + S++ ++K+   +C+ L A+K  +DDL KVF LARGLGSKY+ F+  ++TK  Y  FNQFV+AL+
Subjt:  SLKKNNMSIEEYVKKNLFLCNKLTAMKN-LDDLSKVFILARGLGSKYK-FKTTVLTKALYTMFNQFVIALK

A0A2K3JSC9 Uncharacterized protein (Fragment)1.5e-0647.14Show/hide
Query:  LKKNNMSIEEYVKKNLFLCNKLTAM-KNLDDLSKVFILARGLGSKYK-FKTTVLTKALYTMFNQFVIALK
        L K  +S+EEY++K   +C+KL A+ K L D+ KVF +++GLG+KYK FK  VL+K  Y +F+QF+++L+
Subjt:  LKKNNMSIEEYVKKNLFLCNKLTAM-KNLDDLSKVFILARGLGSKYK-FKTTVLTKALYTMFNQFVIALK

A0A2K3LWK7 Uncharacterized protein (Fragment)7.4e-0644.29Show/hide
Query:  LKKNNMSIEEYVKKNLFLCNKLTAM-KNLDDLSKVFILARGLGSKYK-FKTTVLTKALYTMFNQFVIALK
        + K ++S++EY++K   +C+KL A+ K L D+ KVF +++GLG+KYK F+  VL+K  Y  FNQF+++L+
Subjt:  LKKNNMSIEEYVKKNLFLCNKLTAM-KNLDDLSKVFILARGLGSKYK-FKTTVLTKALYTMFNQFVIALK

A0A2Z6P7T0 Reverse transcriptase Ty1/copia-type domain-containing protein3.9e-0747.89Show/hide
Query:  SLKKNNMSIEEYVKKNLFLCNKLTAM-KNLDDLSKVFILARGLGSKYK-FKTTVLTKALYTMFNQFVIALK
        +L K N+S++EY++K   LC+KLTA+ K + D+ KVF +++GLG KYK F+  VL+K  Y  FNQF+++L+
Subjt:  SLKKNNMSIEEYVKKNLFLCNKLTAM-KNLDDLSKVFILARGLGSKYK-FKTTVLTKALYTMFNQFVIALK

A0A6J1DMG5 uncharacterized protein LOC1110213794.5e-1159.72Show/hide
Query:  SLKKNNMSIEEYVKKNLFLCNKLTAMKN-LDDLSKVFILARGLGSKYK-FKTTVLTKALYTMFNQFVIALKA
        +LKK ++S++EY++K   LC++L AMK  LDDL+KVF LARGLG KYK F+T +L+KA Y  +NQFV+ALKA
Subjt:  SLKKNNMSIEEYVKKNLFLCNKLTAMKN-LDDLSKVFILARGLGSKYK-FKTTVLTKALYTMFNQFVIALKA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AGCCTAAAGAAAAATAATATGTCCATTGAAGAGTATGTCAAAAAAAATTTGTTTCTATGCAATAAACTTACAGCTATGAAGAACCTAGATGATCTAAGCAAGGTATTCAT
CTTAGCTCGCGGATTAGGATCCAAATACAAGTTTAAAACAACAGTGCTAACCAAAGCTCTTTATACAATGTTCAACCAATTTGTTATTGCCCTCAAAGCT
mRNA sequenceShow/hide mRNA sequence
AGCCTAAAGAAAAATAATATGTCCATTGAAGAGTATGTCAAAAAAAATTTGTTTCTATGCAATAAACTTACAGCTATGAAGAACCTAGATGATCTAAGCAAGGTATTCAT
CTTAGCTCGCGGATTAGGATCCAAATACAAGTTTAAAACAACAGTGCTAACCAAAGCTCTTTATACAATGTTCAACCAATTTGTTATTGCCCTCAAAGCT
Protein sequenceShow/hide protein sequence
SLKKNNMSIEEYVKKNLFLCNKLTAMKNLDDLSKVFILARGLGSKYKFKTTVLTKALYTMFNQFVIALKA