; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS023606 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS023606
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRibonuclease P
Genome locationscaffold155:530338..531651
RNA-Seq ExpressionMS023606
SyntenyMS023606
Gene Ontology termsGO:0001682 - tRNA 5'-leader removal (biological process)
GO:0006364 - rRNA processing (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0000172 - ribonuclease MRP complex (cellular component)
GO:0005655 - nucleolar ribonuclease P complex (cellular component)
GO:0004526 - ribonuclease P activity (molecular function)
GO:0033204 - ribonuclease P RNA binding (molecular function)
InterPro domainsIPR002759 - RNase P subunit Pop5/Rpp14/Rnp2-like
IPR038085 - RNase P subunit Pop5/Rpp14/Rnp2-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022141762.1 probable ribonuclease P/MRP protein subunit POP5 [Momordica charantia]1.7e-81100Show/hide
Query:  MVRYRNRYLILEVILDPEKDFATDDSIIITQYNISKAIKDSILLNFGECGFASTLGSFQVRYVNPITKLCIIRTSKEDYQKVWAAITMVRTIGNCPVLFN
        MVRYRNRYLILEVILDPEKDFATDDSIIITQYNISKAIKDSILLNFGECGFASTLGSFQVRYVNPITKLCIIRTSKEDYQKVWAAITMVRTIGNCPVLFN
Subjt:  MVRYRNRYLILEVILDPEKDFATDDSIIITQYNISKAIKDSILLNFGECGFASTLGSFQVRYVNPITKLCIIRTSKEDYQKVWAAITMVRTIGNCPVLFN

Query:  LLDLNGNTRACKNTALRFEELKFEQYKLMVGFRLSDDVNLQMQNCLEKIRTWD
        LLDLNGNTRACKNTALRFEELKFEQYKLMVGFRLSDDVNLQMQNCLEKIRTWD
Subjt:  LLDLNGNTRACKNTALRFEELKFEQYKLMVGFRLSDDVNLQMQNCLEKIRTWD

XP_022932062.1 probable ribonuclease P/MRP protein subunit POP5 [Cucurbita moschata]2.3e-6783.01Show/hide
Query:  MVRYRNRYLILEVILDPEKDFATDDSIIITQYNISKAIKDSILLNFGECGFASTLGSFQVRYVNPITKLCIIRTSKEDYQKVWAAITMVRTIGNCPVLFN
        MV ++NRYL+ EV+LDP KD ATDD IIITQYN+SKAIKDSILLNFGECGFAS+LGSFQVRYVNPITKLCIIR S+EDYQ VWAAITMVR+I NCPV+FN
Subjt:  MVRYRNRYLILEVILDPEKDFATDDSIIITQYNISKAIKDSILLNFGECGFASTLGSFQVRYVNPITKLCIIRTSKEDYQKVWAAITMVRTIGNCPVLFN

Query:  LLDLNGNTRACKNTALRFEELKFEQYKLMVGFRLSDDVNLQMQNCLEKIRTWD
        LLDL GN+RACKNTALR +ELKFEQYKLMVG R+SD VNLQMQNCLEKIR+ D
Subjt:  LLDLNGNTRACKNTALRFEELKFEQYKLMVGFRLSDDVNLQMQNCLEKIRTWD

XP_022972913.1 probable ribonuclease P/MRP protein subunit POP5 [Cucurbita maxima]2.3e-6783.01Show/hide
Query:  MVRYRNRYLILEVILDPEKDFATDDSIIITQYNISKAIKDSILLNFGECGFASTLGSFQVRYVNPITKLCIIRTSKEDYQKVWAAITMVRTIGNCPVLFN
        MV ++NRYL+ EV+LDP KD ATDD IIITQYN+SKAIKDSILLNFGECGFAS+LGSFQV+YVNPITKLCIIR S+EDYQ VWAAITMVR+I NCPV+FN
Subjt:  MVRYRNRYLILEVILDPEKDFATDDSIIITQYNISKAIKDSILLNFGECGFASTLGSFQVRYVNPITKLCIIRTSKEDYQKVWAAITMVRTIGNCPVLFN

Query:  LLDLNGNTRACKNTALRFEELKFEQYKLMVGFRLSDDVNLQMQNCLEKIRTWD
        LLDL GN+RACKNTALR +ELKFEQYKLMVG R+SD VNLQMQNCLEKIRT D
Subjt:  LLDLNGNTRACKNTALRFEELKFEQYKLMVGFRLSDDVNLQMQNCLEKIRTWD

XP_023524475.1 probable ribonuclease P/MRP protein subunit POP5 [Cucurbita pepo subsp. pepo]4.4e-6682.35Show/hide
Query:  MVRYRNRYLILEVILDPEKDFATDDSIIITQYNISKAIKDSILLNFGECGFASTLGSFQVRYVNPITKLCIIRTSKEDYQKVWAAITMVRTIGNCPVLFN
        MV ++NRYL+ EV LDP KD ATDD IIITQYN+SKAIKDSILLNFGECGFAS+LGSFQVRYVNPITKLCIIR S+EDYQ VWAAITMVR+I NCPV+FN
Subjt:  MVRYRNRYLILEVILDPEKDFATDDSIIITQYNISKAIKDSILLNFGECGFASTLGSFQVRYVNPITKLCIIRTSKEDYQKVWAAITMVRTIGNCPVLFN

Query:  LLDLNGNTRACKNTALRFEELKFEQYKLMVGFRLSDDVNLQMQNCLEKIRTWD
        LLDL GN+RACKNTALR +ELKFEQYKLMVG  +SD VNLQM NCLEKIRT D
Subjt:  LLDLNGNTRACKNTALRFEELKFEQYKLMVGFRLSDDVNLQMQNCLEKIRTWD

XP_038899949.1 probable ribonuclease P/MRP protein subunit POP5 [Benincasa hispida]1.8e-6783.44Show/hide
Query:  MVRYRNRYLILEVILDPEKDFATDDSIIITQYNISKAIKDSILLNFGECGFASTLGSFQVRYVNPITKLCIIRTSKEDYQKVWAAITMVRTIGNCPVLFN
        MVR++NRY++LEV+LDP KD  TDD IIITQYN+SKAIKDSILLNFGECGFAS+LGSFQV+YVNPITKLCIIR S+EDYQ VWAAITMVRTI NCPV+FN
Subjt:  MVRYRNRYLILEVILDPEKDFATDDSIIITQYNISKAIKDSILLNFGECGFASTLGSFQVRYVNPITKLCIIRTSKEDYQKVWAAITMVRTIGNCPVLFN

Query:  LLDLNGNTRACKNTALRFEELKFEQYKLMVGFRLSDDVNLQMQNCLEKIRT
        LLDL+GNTRACKNTALR ++LKFEQYKLMVG RL D+VNLQMQNCLEKI T
Subjt:  LLDLNGNTRACKNTALRFEELKFEQYKLMVGFRLSDDVNLQMQNCLEKIRT

TrEMBL top hitse value%identityAlignment
A0A1S3CEI9 Ribonuclease P6.5e-6379.19Show/hide
Query:  MVRYRNRYLILEVILDPEKDFATDDSIIITQYNISKAIKDSILLNFGECGFASTLGSFQVRYVNPITKLCIIRTSKEDYQKVWAAITMVRTIGNCPVLFN
        MVR++NRY++ EV+LDP K+  TDD IIITQYN+SKAIKDSILLNFGECGFAS LGSFQV+YVNPITKLCIIR S+EDYQ VWAAITMVR+I NCPV+FN
Subjt:  MVRYRNRYLILEVILDPEKDFATDDSIIITQYNISKAIKDSILLNFGECGFASTLGSFQVRYVNPITKLCIIRTSKEDYQKVWAAITMVRTIGNCPVLFN

Query:  LLDLNGNTRACKNTALRFEELKFEQYKLMVGFRLSDDVNLQMQNCLEKI
        LLDL+GNTRACKNTALR + LKFEQYKLMVG  L D+V + MQNCLEKI
Subjt:  LLDLNGNTRACKNTALRFEELKFEQYKLMVGFRLSDDVNLQMQNCLEKI

A0A5D3CDD4 Ribonuclease P1.7e-6379.87Show/hide
Query:  MVRYRNRYLILEVILDPEKDFATDDSIIITQYNISKAIKDSILLNFGECGFASTLGSFQVRYVNPITKLCIIRTSKEDYQKVWAAITMVRTIGNCPVLFN
        MVR++NRY++ EV+LDP K+  TDD IIITQYN+SKAIKDSILLNFGECGFAS LGSFQV+YVNPITKLCIIR S+EDYQ VWAAITMVR+I NCPV+FN
Subjt:  MVRYRNRYLILEVILDPEKDFATDDSIIITQYNISKAIKDSILLNFGECGFASTLGSFQVRYVNPITKLCIIRTSKEDYQKVWAAITMVRTIGNCPVLFN

Query:  LLDLNGNTRACKNTALRFEELKFEQYKLMVGFRLSDDVNLQMQNCLEKI
        LLDL+GNTRACKNTALR + LKFEQYKLMVG  L D+V +QMQNCLEKI
Subjt:  LLDLNGNTRACKNTALRFEELKFEQYKLMVGFRLSDDVNLQMQNCLEKI

A0A6J1CLH1 Ribonuclease P8.1e-82100Show/hide
Query:  MVRYRNRYLILEVILDPEKDFATDDSIIITQYNISKAIKDSILLNFGECGFASTLGSFQVRYVNPITKLCIIRTSKEDYQKVWAAITMVRTIGNCPVLFN
        MVRYRNRYLILEVILDPEKDFATDDSIIITQYNISKAIKDSILLNFGECGFASTLGSFQVRYVNPITKLCIIRTSKEDYQKVWAAITMVRTIGNCPVLFN
Subjt:  MVRYRNRYLILEVILDPEKDFATDDSIIITQYNISKAIKDSILLNFGECGFASTLGSFQVRYVNPITKLCIIRTSKEDYQKVWAAITMVRTIGNCPVLFN

Query:  LLDLNGNTRACKNTALRFEELKFEQYKLMVGFRLSDDVNLQMQNCLEKIRTWD
        LLDLNGNTRACKNTALRFEELKFEQYKLMVGFRLSDDVNLQMQNCLEKIRTWD
Subjt:  LLDLNGNTRACKNTALRFEELKFEQYKLMVGFRLSDDVNLQMQNCLEKIRTWD

A0A6J1EVL4 Ribonuclease P1.1e-6783.01Show/hide
Query:  MVRYRNRYLILEVILDPEKDFATDDSIIITQYNISKAIKDSILLNFGECGFASTLGSFQVRYVNPITKLCIIRTSKEDYQKVWAAITMVRTIGNCPVLFN
        MV ++NRYL+ EV+LDP KD ATDD IIITQYN+SKAIKDSILLNFGECGFAS+LGSFQVRYVNPITKLCIIR S+EDYQ VWAAITMVR+I NCPV+FN
Subjt:  MVRYRNRYLILEVILDPEKDFATDDSIIITQYNISKAIKDSILLNFGECGFASTLGSFQVRYVNPITKLCIIRTSKEDYQKVWAAITMVRTIGNCPVLFN

Query:  LLDLNGNTRACKNTALRFEELKFEQYKLMVGFRLSDDVNLQMQNCLEKIRTWD
        LLDL GN+RACKNTALR +ELKFEQYKLMVG R+SD VNLQMQNCLEKIR+ D
Subjt:  LLDLNGNTRACKNTALRFEELKFEQYKLMVGFRLSDDVNLQMQNCLEKIRTWD

A0A6J1IBH7 Ribonuclease P1.1e-6783.01Show/hide
Query:  MVRYRNRYLILEVILDPEKDFATDDSIIITQYNISKAIKDSILLNFGECGFASTLGSFQVRYVNPITKLCIIRTSKEDYQKVWAAITMVRTIGNCPVLFN
        MV ++NRYL+ EV+LDP KD ATDD IIITQYN+SKAIKDSILLNFGECGFAS+LGSFQV+YVNPITKLCIIR S+EDYQ VWAAITMVR+I NCPV+FN
Subjt:  MVRYRNRYLILEVILDPEKDFATDDSIIITQYNISKAIKDSILLNFGECGFASTLGSFQVRYVNPITKLCIIRTSKEDYQKVWAAITMVRTIGNCPVLFN

Query:  LLDLNGNTRACKNTALRFEELKFEQYKLMVGFRLSDDVNLQMQNCLEKIRTWD
        LLDL GN+RACKNTALR +ELKFEQYKLMVG R+SD VNLQMQNCLEKIRT D
Subjt:  LLDLNGNTRACKNTALRFEELKFEQYKLMVGFRLSDDVNLQMQNCLEKIRTWD

SwissProt top hitse value%identityAlignment
Q1JQ92 Ribonuclease P/MRP protein subunit POP51.8e-0930.08Show/hide
Query:  MVRYRNRYLILEVIL-DPEKDFATDDSIIITQYNISKAIKDSILLNFGECGFASTLGSFQVRYVNPITKLCIIRTSKEDYQKVWAAITMVRTIGN----C
        MVR+++RYL+ EV+  DP      +D ++ T       ++D+I    G  G A+    F VRY+N  T + ++R  KE Y+ VW+A+  + ++ N     
Subjt:  MVRYRNRYLILEVIL-DPEKDFATDDSIIITQYNISKAIKDSILLNFGECGFASTLGSFQVRYVNPITKLCIIRTSKEDYQKVWAAITMVRTIGN----C

Query:  PVLFNLLDLNGNTRACKNTALRF
        P   N L + G  R C+   +++
Subjt:  PVLFNLLDLNGNTRACKNTALRF

Q54EP3 Probable ribonuclease P/MRP protein subunit POP51.5e-1134.75Show/hide
Query:  MVRYRNRYLILEVIL-DPEKDFATDDSIIITQYNISKAIKDSILLNFGECGFASTLGSFQVRYVNPITKLCIIRTSKEDYQKVWAAITMVRTIGNCPVLF
        MVR +NRYL+ EVI  D EK     DS +  Q+ IS  +K+ +    GE  + +   + ++ YVNP T + IIR S E Y+ +W A+T++ +    P+ F
Subjt:  MVRYRNRYLILEVIL-DPEKDFATDDSIIITQYNISKAIKDSILLNFGECGFASTLGSFQVRYVNPITKLCIIRTSKEDYQKVWAAITMVRTIGNCPVLF

Query:  NLLDLNGNTRACKNTALR
         ++ + G+ R C+  A++
Subjt:  NLLDLNGNTRACKNTALR

Q6AWV1 Probable ribonuclease P/MRP protein subunit POP54.5e-4557.62Show/hide
Query:  MVRYRNRYLILEVILDPEKDFATDDS-IIITQYNISKAIKDSILLNFGECGFASTLGSFQVRYVNPITKLCIIRTSKEDYQKVWAAITMVRTIGNCPVLF
        MV ++NRY+++EV LDP+KD   + + II+TQ+N+SKAIKDSIL+NFGECG  S+LGSFQV+YVNPITKLCI+R+S+E++++VW AIT+V++IGNCPV+ 
Subjt:  MVRYRNRYLILEVILDPEKDFATDDS-IIITQYNISKAIKDSILLNFGECGFASTLGSFQVRYVNPITKLCIIRTSKEDYQKVWAAITMVRTIGNCPVLF

Query:  NLLDLNGNTRACKNTALRFEELKFEQYKLMVGFRLSDDVNLQMQNCLEKIR
        NLLD++G  RAC++TAL+ ++ KFEQ        LS++   QM   LEKI+
Subjt:  NLLDLNGNTRACKNTALRFEELKFEQYKLMVGFRLSDDVNLQMQNCLEKIR

Q969H6 Ribonuclease P/MRP protein subunit POP55.5e-1131.71Show/hide
Query:  MVRYRNRYLILEVIL-DPEKDFATDDSIIITQYNISKAIKDSILLNFGECGFASTLGSFQVRYVNPITKLCIIRTSKEDYQKVWAAITMVRTIGN----C
        MVR+++RYL+ E++  DP    + DD +      +S  ++D+I    G  G A+    F VRY+N  T + ++R  KE YQ VW+A+  +  + N     
Subjt:  MVRYRNRYLILEVIL-DPEKDFATDDSIIITQYNISKAIKDSILLNFGECGFASTLGSFQVRYVNPITKLCIIRTSKEDYQKVWAAITMVRTIGN----C

Query:  PVLFNLLDLNGNTRACKNTALRF
        P  FN L + G  R C+   +++
Subjt:  PVLFNLLDLNGNTRACKNTALRF

Q9UU90 Ribonuclease P/MRP protein subunit POP51.0e-1228.57Show/hide
Query:  MVRYRNRYLILEVILDPEKDFATDDSI----IITQYNISKAIKDSILLNFGECGFASTLGSFQVRYVNPITKLCIIRTSKEDYQKVWAAITMVRTIGNCP
        MVR+++RYL+ EV+    K+F    +I     IT  ++SK I+  +  NFG+ G      S  V+Y +P T   I+R S++ ++  WAA+ ++R +   P
Subjt:  MVRYRNRYLILEVILDPEKDFATDDSI----IITQYNISKAIKDSILLNFGECGFASTLGSFQVRYVNPITKLCIIRTSKEDYQKVWAAITMVRTIGNCP

Query:  VLFNLLDLNGNTRACKNTALRFEELKFEQYKLM
        V+  ++ ++G  +  +  A+   + +     LM
Subjt:  VLFNLLDLNGNTRACKNTALRFEELKFEQYKLM

Arabidopsis top hitse value%identityAlignment
AT1G04635.1 ribonuclease P family protein / Rpp14 family protein3.2e-4657.62Show/hide
Query:  MVRYRNRYLILEVILDPEKDFATDDS-IIITQYNISKAIKDSILLNFGECGFASTLGSFQVRYVNPITKLCIIRTSKEDYQKVWAAITMVRTIGNCPVLF
        MV ++NRY+++EV LDP+KD   + + II+TQ+N+SKAIKDSIL+NFGECG  S+LGSFQV+YVNPITKLCI+R+S+E++++VW AIT+V++IGNCPV+ 
Subjt:  MVRYRNRYLILEVILDPEKDFATDDS-IIITQYNISKAIKDSILLNFGECGFASTLGSFQVRYVNPITKLCIIRTSKEDYQKVWAAITMVRTIGNCPVLF

Query:  NLLDLNGNTRACKNTALRFEELKFEQYKLMVGFRLSDDVNLQMQNCLEKIR
        NLLD++G  RAC++TAL+ ++ KFEQ        LS++   QM   LEKI+
Subjt:  NLLDLNGNTRACKNTALRFEELKFEQYKLMVGFRLSDDVNLQMQNCLEKIR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGAGGTATAGAAACCGATACTTGATACTTGAAGTTATCTTAGATCCCGAAAAAGACTTTGCAACAGATGATTCTATTATCATTACCCAATACAATATTTCGAAAGC
AATCAAGGATAGTATTCTTCTCAACTTTGGGGAGTGTGGTTTTGCTTCCACACTCGGATCTTTTCAAGTTAGGTATGTAAATCCGATCACAAAGTTATGTATCATTAGAA
CTTCCAAAGAGGACTACCAGAAGGTCTGGGCTGCAATTACTATGGTGAGGACTATCGGCAATTGTCCTGTTCTGTTTAATCTACTGGACCTAAATGGAAATACCAGGGCT
TGCAAGAACACTGCCTTGAGGTTCGAAGAATTGAAGTTTGAGCAATATAAGCTTATGGTTGGATTTCGTCTCTCGGATGATGTCAATTTGCAAATGCAGAATTGTCTCGA
GAAGATTAGAACTTGGGAC
mRNA sequenceShow/hide mRNA sequence
ATGGTGAGGTATAGAAACCGATACTTGATACTTGAAGTTATCTTAGATCCCGAAAAAGACTTTGCAACAGATGATTCTATTATCATTACCCAATACAATATTTCGAAAGC
AATCAAGGATAGTATTCTTCTCAACTTTGGGGAGTGTGGTTTTGCTTCCACACTCGGATCTTTTCAAGTTAGGTATGTAAATCCGATCACAAAGTTATGTATCATTAGAA
CTTCCAAAGAGGACTACCAGAAGGTCTGGGCTGCAATTACTATGGTGAGGACTATCGGCAATTGTCCTGTTCTGTTTAATCTACTGGACCTAAATGGAAATACCAGGGCT
TGCAAGAACACTGCCTTGAGGTTCGAAGAATTGAAGTTTGAGCAATATAAGCTTATGGTTGGATTTCGTCTCTCGGATGATGTCAATTTGCAAATGCAGAATTGTCTCGA
GAAGATTAGAACTTGGGAC
Protein sequenceShow/hide protein sequence
MVRYRNRYLILEVILDPEKDFATDDSIIITQYNISKAIKDSILLNFGECGFASTLGSFQVRYVNPITKLCIIRTSKEDYQKVWAAITMVRTIGNCPVLFNLLDLNGNTRA
CKNTALRFEELKFEQYKLMVGFRLSDDVNLQMQNCLEKIRTWD