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MS023615 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS023615
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRNA-directed DNA polymerase (reverse transcriptase)-related family protein
Genome locationscaffold155:671132..671254
RNA-Seq ExpressionMS023615
SyntenyMS023615
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_009124577.2 uncharacterized protein LOC103849567 [Brassica rapa]2.8e-0768.29Show/hide
Query:  CYPKELGGLNFRDLEGFNKALLVKQVWRLLCNPNLLVAKVL
        C PK+ GGL FRDLE FN+ALL KQVWR+L NPN+L+A++L
Subjt:  CYPKELGGLNFRDLEGFNKALLVKQVWRLLCNPNLLVAKVL
XP_013645843.2 uncharacterized protein LOC106350515 [Brassica napus]2.8e-0768.29Show/hide
Query:  CYPKELGGLNFRDLEGFNKALLVKQVWRLLCNPNLLVAKVL
        C PK+ GGL FRDLE FN+ALL KQVWR+L NPN+L+A++L
Subjt:  CYPKELGGLNFRDLEGFNKALLVKQVWRLLCNPNLLVAKVL
XP_022131662.1 uncharacterized protein LOC111004787 [Momordica charantia]6.0e-1078.05Show/hide
Query:  CYPKELGGLNFRDLEGFNKALLVKQVWRLLCNPNLLVAKVL
        C PKELGGLNFRDLEGFN+AL+ KQVWR+L NPN+LV++VL
Subjt:  CYPKELGGLNFRDLEGFNKALLVKQVWRLLCNPNLLVAKVL
XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]1.3e-0978.05Show/hide
Query:  CYPKELGGLNFRDLEGFNKALLVKQVWRLLCNPNLLVAKVL
        CYPKE GGLNFRDLEGFN+AL+ K VWR L +PNLLV+KVL
Subjt:  CYPKELGGLNFRDLEGFNKALLVKQVWRLLCNPNLLVAKVL
XP_022545183.1 uncharacterized protein LOC111199409 [Brassica napus]1.1e-0668.29Show/hide
Query:  CYPKELGGLNFRDLEGFNKALLVKQVWRLLCNPNLLVAKVL
        C PK  GGL FRDLE FN+ALL KQVWR++ NPN L+A+VL
Subjt:  CYPKELGGLNFRDLEGFNKALLVKQVWRLLCNPNLLVAKVL
TrEMBL top hitse value%identityAlignment
A0A5A7Q0C0 RNA-directed DNA polymerase (Reversetranscriptase)-related family protein6.7e-0769.23Show/hide
Query:  PKELGGLNFRDLEGFNKALLVKQVWRLLCNPNLLVAKVL
        PKE+GGL F+DL+ FNKAL+ KQ+WRLL  PNLLV++VL
Subjt:  PKELGGLNFRDLEGFNKALLVKQVWRLLCNPNLLVAKVL
A0A5B6VJW9 Reverse transcriptase1.1e-0668.29Show/hide
Query:  CYPKELGGLNFRDLEGFNKALLVKQVWRLLCNPNLLVAKVL
        CYPK  GGL FRDL  FNKALL KQ WRL   P+ L+AKVL
Subjt:  CYPKELGGLNFRDLEGFNKALLVKQVWRLLCNPNLLVAKVL
A0A6J0LKS2 uncharacterized protein LOC1088315128.7e-0760.98Show/hide
Query:  CYPKELGGLNFRDLEGFNKALLVKQVWRLLCNPNLLVAKVL
        C PK+LGGL F+DLE FN+A+L KQ W++L NPN L+ +VL
Subjt:  CYPKELGGLNFRDLEGFNKALLVKQVWRLLCNPNLLVAKVL
A0A6J1BRN0 uncharacterized protein LOC1110047872.9e-1078.05Show/hide
Query:  CYPKELGGLNFRDLEGFNKALLVKQVWRLLCNPNLLVAKVL
        C PKELGGLNFRDLEGFN+AL+ KQVWR+L NPN+LV++VL
Subjt:  CYPKELGGLNFRDLEGFNKALLVKQVWRLLCNPNLLVAKVL
A0A6J1DX30 uncharacterized protein LOC1110248746.5e-1078.05Show/hide
Query:  CYPKELGGLNFRDLEGFNKALLVKQVWRLLCNPNLLVAKVL
        CYPKE GGLNFRDLEGFN+AL+ K VWR L +PNLLV+KVL
Subjt:  CYPKELGGLNFRDLEGFNKALLVKQVWRLLCNPNLLVAKVL
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G29090.1 Ribonuclease H-like superfamily protein3.9e-0757.5Show/hide
Query:  CYPKELGGLNFRDLEGFNKALLVKQVWRLLCNPNLLVAKV
        CY  E GG+ F+D+E FN ALL KQ+WR+L  P  L+AKV
Subjt:  CYPKELGGLNFRDLEGFNKALLVKQVWRLLCNPNLLVAKV
ATMG00310.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein4.0e-0451.43Show/hide
Query:  GGLNFRDLEGFNKALLVKQVWRLLCNPNLLVAKVL
        GGL FRDL  FN+ALL KQ +R++  P+ L++++L
Subjt:  GGLNFRDLEGFNKALLVKQVWRLLCNPNLLVAKVL

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TGCTATCCCAAAGAGCTTGGTGGGCTGAATTTTAGGGATTTAGAGGGTTTTAATAAGGCGTTGTTGGTTAAGCAAGTTTGGAGATTATTGTGCAATCCGAACCTTCTTGT
TGCAAAGGTTCTA
mRNA sequenceShow/hide mRNA sequence
TGCTATCCCAAAGAGCTTGGTGGGCTGAATTTTAGGGATTTAGAGGGTTTTAATAAGGCGTTGTTGGTTAAGCAAGTTTGGAGATTATTGTGCAATCCGAACCTTCTTGT
TGCAAAGGTTCTA
Protein sequenceShow/hide protein sequence
CYPKELGGLNFRDLEGFNKALLVKQVWRLLCNPNLLVAKVL