CuGenDBv2

Gene ID	MS023617
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Ribonuclease H-like superfamily protein
Genome location	scaffold155:700277..701038
RNA-Seq Expression	MS023617
Synteny	MS023617
Gene Ontology terms	NA
InterPro domains	IPR026960 - Reverse transcriptase zinc-binding domain

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_015382226.1 uncharacterized protein LOC107175329, partial [Citrus sinensis]

6.2e-57

39.76

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Query:  GGLNFRDFEGFNQALLAKQVWRCLTALDILVSKLLRAKYFPNSTCLEAELGLRPLYFWKSFIWGRELLVKGLRRRVGDGKSIRAFRDGWLPRLSMFKPLV
        GG+ FRDF  FNQAL+AKQ WR +   + L++++L+AKYF  S+ +EA+LG RP + W+S +WGR+++ KGLR ++G G  +  ++  WLPRL  FKP  
Subjt:  GGLNFRDFEGFNQALLAKQVWRCLTALDILVSKLLRAKYFPNSTCLEAELGLRPLYFWKSFIWGRELLVKGLRRRVGDGKSIRAFRDGWLPRLSMFKPLV

Query:  VPPLSQDLTVADFIRLDRSWDNNMLQNWFCREDVDIIRRLPLGLMSTEDGWVWHYDKKGVFNVKSGYKFFMHLKLESSSLNQEATKRSWRNLWKLSIPPK
         P L     VAD I  +++W   +    F +ED  +I R+ L      D ++WHYDK G ++VKSGY+  + LK   S  + +++   W  +W   +P K
Subjt:  VPPLSQDLTVADFIRLDRSWDNNMLQNWFCREDVDIIRRLPLGLMSTEDGWVWHYDKKGVFNVKSGYKFFMHLKLESSSLNQEATKRSWRNLWKLSIPPK

Query:  IKHFIWKAINNIVPTRCNLISKGLTIEDVCPMCGKGEETIEHTLLTCKRAREFW
        IK F+W+A+ N++PT  NL  + +    +C  CG   E + H LL CK A++ W
Subjt:  IKHFIWKAINNIVPTRCNLISKGLTIEDVCPMCGKGEETIEHTLLTCKRAREFW

XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]

7.6e-71

48.43

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Query:  GGLNFRDFEGFNQALLAKQVWRCLTALDILVSKLLRAKYFPNSTCLEAELGLRPLYFWKSFIWGRELLVKGLRRRVGDGKSIRAFRDGWLPRLSMFKPLV
        GGLNFRD EGFNQAL+AK VWR L   ++LVSK+L+ KYF +++ L+A    +  YFWK F+WGR+LLVKGLR RVG+G +I+AF D WLPR + FKPL 
Subjt:  GGLNFRDFEGFNQALLAKQVWRCLTALDILVSKLLRAKYFPNSTCLEAELGLRPLYFWKSFIWGRELLVKGLRRRVGDGKSIRAFRDGWLPRLSMFKPLV

Query:  VPPLSQDLTVADFIRLDRSWDNNMLQNWFCREDVDIIRRLPLGLMSTEDGWVWHYDKKGVFNVKSGYKFFMHLKLESSSLNQEATKRSWRNLWKLSIPPK
            + D TVA FI  D +WD   + + FC ED D+I  +P+   + +D W+WHYDK+G ++V+SGYK +MHLK  ++S +       W ++WKL++P K
Subjt:  VPPLSQDLTVADFIRLDRSWDNNMLQNWFCREDVDIIRRLPLGLMSTEDGWVWHYDKKGVFNVKSGYKFFMHLKLESSSLNQEATKRSWRNLWKLSIPPK

Query:  IKHFIWKAINNIVPTRCNLISKGLTIEDVCPMCGKGEETIEHTLLTCKRAREFW
        IK FIW++ +  +PT  NL+ +G+     C +CG   E+I H    CKRAR+ W
Subjt:  IKHFIWKAINNIVPTRCNLISKGLTIEDVCPMCGKGEETIEHTLLTCKRAREFW

XP_024035599.1 uncharacterized protein LOC112096407 [Citrus clementina]

2.5e-58

40.94

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Query:  GGLNFRDFEGFNQALLAKQVWRCLTALDILVSKLLRAKYFPNSTCLEAELGLRPLYFWKSFIWGRELLVKGLRRRVGDGKSIRAFRDGWLPRLSMFKPLV
        GGL FRD   FNQALLAKQ WR L   + LV+K+++A+Y+ N+  L A++G  P + W+S +WGR++L KG R R+G+G+ I+     W+PR + FK +V
Subjt:  GGLNFRDFEGFNQALLAKQVWRCLTALDILVSKLLRAKYFPNSTCLEAELGLRPLYFWKSFIWGRELLVKGLRRRVGDGKSIRAFRDGWLPRLSMFKPLV

Query:  VPPLSQDLTVADFIRLDRSWDNNMLQNWFCREDVDIIRRLPLGLMSTEDGWVWHYDKKGVFNVKSGYKFFMHLKLESSSLNQEATKRSWRNLWKLSIPPK
         P L     V++ I  ++ W+ +M+   F R D DII+ + L     ED  +WHYD+KG+++VKSGY+  + +K      +     + W+NLWKL++P K
Subjt:  VPPLSQDLTVADFIRLDRSWDNNMLQNWFCREDVDIIRRLPLGLMSTEDGWVWHYDKKGVFNVKSGYKFFMHLKLESSSLNQEATKRSWRNLWKLSIPPK

Query:  IKHFIWKAINNIVPTRCNLISKGLTIEDVCPMCGKGEETIEHTLLTCKRAREFW
        IK F+WKA    +PT  NL  + +  E +C +C +G E + H L+ CK AR+ W
Subjt:  IKHFIWKAINNIVPTRCNLISKGLTIEDVCPMCGKGEETIEHTLLTCKRAREFW

XP_024037590.1 uncharacterized protein LOC112097210 [Citrus clementina]

2.8e-57

39.76

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Query:  GGLNFRDFEGFNQALLAKQVWRCLTALDILVSKLLRAKYFPNSTCLEAELGLRPLYFWKSFIWGRELLVKGLRRRVGDGKSIRAFRDGWLPRLSMFKPLV
        GG+ FRD   FNQAL+AKQ WR +     LV+++L+A+YF ++  + A LG +P + W+S +WGR++L KG R R+G+G+++  + + W+PR + FKP+ 
Subjt:  GGLNFRDFEGFNQALLAKQVWRCLTALDILVSKLLRAKYFPNSTCLEAELGLRPLYFWKSFIWGRELLVKGLRRRVGDGKSIRAFRDGWLPRLSMFKPLV

Query:  VPPLSQDLTVADFIRLDRSWDNNMLQNWFCREDVDIIRRLPLGLMSTEDGWVWHYDKKGVFNVKSGYKFFMHLKLESSSLNQEATKRSWRNLWKLSIPPK
         P +  D TVA+ I   + W  +++   F  ED + I ++PL     ED  +WHYDKKG ++VKSGY+  M +K           +  WR +WKL+IP K
Subjt:  VPPLSQDLTVADFIRLDRSWDNNMLQNWFCREDVDIIRRLPLGLMSTEDGWVWHYDKKGVFNVKSGYKFFMHLKLESSSLNQEATKRSWRNLWKLSIPPK

Query:  IKHFIWKAINNIVPTRCNLISKGLTIEDVCPMCGKGEETIEHTLLTCKRAREFW
        +K F+W+A ++++PT  NL  K +  E +C  C    ET+ H L+ C RAR+ W
Subjt:  IKHFIWKAINNIVPTRCNLISKGLTIEDVCPMCGKGEETIEHTLLTCKRAREFW

XP_024950112.1 uncharacterized protein LOC112496847 [Citrus sinensis]

1.9e-58

43.7

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Query:  GGLNFRDFEGFNQALLAKQVWRCLTALDILVSKLLRAKYFPNSTCLEAELGLRPLYFWKSFIWGRELLVKGLRRRVGDGKSIRAFRDGWLPRLSMFKPLV
        GGL FR+F  FNQAL+AKQ WR L   + LVS++L+A+YF NS+ L A+ G    Y W+S +WGR+++ KG+R R+G+GK I  F D WLPR   F+P+ 
Subjt:  GGLNFRDFEGFNQALLAKQVWRCLTALDILVSKLLRAKYFPNSTCLEAELGLRPLYFWKSFIWGRELLVKGLRRRVGDGKSIRAFRDGWLPRLSMFKPLV

Query:  VPPLSQDLTVADFIRLDRSWDNNMLQNWFCREDVDIIRRLPLGLMSTEDGWVWHYDKKGVFNVKSGYKFFMHLKLESSSLNQEATKRSWRNLWKLSIPPK
           L     VAD I+ D  WD   L+  F   D   I ++PL     ED  +WHYDK+G ++VKSGY+  +  K   S+   EA+ + W  LW L +P K
Subjt:  VPPLSQDLTVADFIRLDRSWDNNMLQNWFCREDVDIIRRLPLGLMSTEDGWVWHYDKKGVFNVKSGYKFFMHLKLESSSLNQEATKRSWRNLWKLSIPPK

Query:  IKHFIWKAINNIVPTRCNLISKGLTIEDVCPMCGKGEETIEHTLLTCKRAREFW
        +K F+W+A NN++P+  NL  + +  E  C  C    ETI H LL CK AR+ W
Subjt:  IKHFIWKAINNIVPTRCNLISKGLTIEDVCPMCGKGEETIEHTLLTCKRAREFW

TrEMBL top hits

e value

%identity

Alignment

A0A1S8ACU2 Ribonuclease H-like superfamily protein

1.1e-59

40.55

Show/hide

Query:  GGLNFRDFEGFNQALLAKQVWRCLTALDILVSKLLRAKYFPNSTCLEAELGLRPLYFWKSFIWGRELLVKGLRRRVGDGKSIRAFRDGWLPRLSMFKPLV
        GGL FRD   FNQAL+AKQ WR +   + L++K+L+AKYF  +  L+A+LG +P + W+S IWGR+++V G+R R+G G  ++ ++  W+PR   FKP+ 
Subjt:  GGLNFRDFEGFNQALLAKQVWRCLTALDILVSKLLRAKYFPNSTCLEAELGLRPLYFWKSFIWGRELLVKGLRRRVGDGKSIRAFRDGWLPRLSMFKPLV

Query:  VPPLSQDLTVADFIRLDRSWDNNMLQNWFCREDVDIIRRLPLGLMSTEDGWVWHYDKKGVFNVKSGYKFFMHLKLESSSLNQEATKRSWRNLWKLSIPPK
         P L  D TVA+ I  ++ W  +++Q  F  ED ++I R+ L +    D  +WHYDKKG ++VKSGY+  M +K  +   +  +    W  +W L +P K
Subjt:  VPPLSQDLTVADFIRLDRSWDNNMLQNWFCREDVDIIRRLPLGLMSTEDGWVWHYDKKGVFNVKSGYKFFMHLKLESSSLNQEATKRSWRNLWKLSIPPK

Query:  IKHFIWKAINNIVPTRCNLISKGLTIEDVCPMCGKGEETIEHTLLTCKRAREFW
        IK F+WKA  N +PT  NL  + +  E +CP C   +E I H ++ CK A++ W
Subjt:  IKHFIWKAINNIVPTRCNLISKGLTIEDVCPMCGKGEETIEHTLLTCKRAREFW

A0A6J1DX30 uncharacterized protein LOC111024874

3.7e-71

48.43

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Query:  GGLNFRDFEGFNQALLAKQVWRCLTALDILVSKLLRAKYFPNSTCLEAELGLRPLYFWKSFIWGRELLVKGLRRRVGDGKSIRAFRDGWLPRLSMFKPLV
        GGLNFRD EGFNQAL+AK VWR L   ++LVSK+L+ KYF +++ L+A    +  YFWK F+WGR+LLVKGLR RVG+G +I+AF D WLPR + FKPL 
Subjt:  GGLNFRDFEGFNQALLAKQVWRCLTALDILVSKLLRAKYFPNSTCLEAELGLRPLYFWKSFIWGRELLVKGLRRRVGDGKSIRAFRDGWLPRLSMFKPLV

Query:  VPPLSQDLTVADFIRLDRSWDNNMLQNWFCREDVDIIRRLPLGLMSTEDGWVWHYDKKGVFNVKSGYKFFMHLKLESSSLNQEATKRSWRNLWKLSIPPK
            + D TVA FI  D +WD   + + FC ED D+I  +P+   + +D W+WHYDK+G ++V+SGYK +MHLK  ++S +       W ++WKL++P K
Subjt:  VPPLSQDLTVADFIRLDRSWDNNMLQNWFCREDVDIIRRLPLGLMSTEDGWVWHYDKKGVFNVKSGYKFFMHLKLESSSLNQEATKRSWRNLWKLSIPPK

Query:  IKHFIWKAINNIVPTRCNLISKGLTIEDVCPMCGKGEETIEHTLLTCKRAREFW
        IK FIW++ +  +PT  NL+ +G+     C +CG   E+I H    CKRAR+ W
Subjt:  IKHFIWKAINNIVPTRCNLISKGLTIEDVCPMCGKGEETIEHTLLTCKRAREFW

A0A803NHG3 Uncharacterized protein

1.6e-58

41.96

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Query:  GGLNFRDFEGFNQALLAKQVWRCLTALDILVSKLLRAKYFPNSTCLEAELGLRPLYFWKSFIWGRELLVKGLRRRVGDGKSIRAFRDGWLPRLSMFKPLV
        GGL FRD E FNQALLAKQ+WRCL     L SK+L+A YFP+ + L A+ G    + W+S +WG+E+++KG R RVG+G+ +R   D WLPR + FK   
Subjt:  GGLNFRDFEGFNQALLAKQVWRCLTALDILVSKLLRAKYFPNSTCLEAELGLRPLYFWKSFIWGRELLVKGLRRRVGDGKSIRAFRDGWLPRLSMFKPLV

Query:  VPPLSQDLTVADFIRLDRSWDNNMLQNWFCREDVDIIRRLPLGLMSTEDGWVWHYDKKGVFNVKSGYKFFMHLKLESSSLNQEATKRSWRNLWKLSIPPK
         PP  Q L V D       WD + ++  F RED ++I RLP      ED  +WHY + G + V+SGY+    ++   ++L  +  K  WR LWKL +PPK
Subjt:  VPPLSQDLTVADFIRLDRSWDNNMLQNWFCREDVDIIRRLPLGLMSTEDGWVWHYDKKGVFNVKSGYKFFMHLKLESSSLNQEATKRSWRNLWKLSIPPK

Query:  IKHFIWKAINNIVPTRCNLISKGLTIEDVCPMCGKG-EETIEHTLLTCKRAREFW
        +KHF WK  N+ +PT  NL+++ +  +  C  C  G  E I H L  C   +  W
Subjt:  IKHFIWKAINNIVPTRCNLISKGLTIEDVCPMCGKG-EETIEHTLLTCKRAREFW

A0A803PEK8 Uncharacterized protein

9.4e-59

43.53

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Query:  GGLNFRDFEGFNQALLAKQVWRCLTALDILVSKLLRAKYFPNSTCLEAELGLRPLYFWKSFIWGRELLVKGLRRRVGDGKSIRAFRDGWLPRLSMFKPLV
        GGL FRD   FNQALLAKQVWRC+   D L S++L+A YFP  + LEA+ G    + W+S +WG++++  G R RVG+G+++R   D WL R   FK   
Subjt:  GGLNFRDFEGFNQALLAKQVWRCLTALDILVSKLLRAKYFPNSTCLEAELGLRPLYFWKSFIWGRELLVKGLRRRVGDGKSIRAFRDGWLPRLSMFKPLV

Query:  VPPLSQDLTVADFIRLDRSWDNNMLQNWFCREDVDIIRRLPLGLMSTEDGWVWHYDKKGVFNVKSGYKFFMHLKLESSSLNQEATKRSWRNLWKLSIPPK
         PPL ++L VAD    D  WD N +++ F  ED ++I   P      ED  +WHY K G + VKSGYK    L  E    + +     W+ LW L IPPK
Subjt:  VPPLSQDLTVADFIRLDRSWDNNMLQNWFCREDVDIIRRLPLGLMSTEDGWVWHYDKKGVFNVKSGYKFFMHLKLESSSLNQEATKRSWRNLWKLSIPPK

Query:  IKHFIWKAINNIVPTRCNLISKGLTIEDVCPMC-GKGEETIEHTLLTCKRAREFW
        IKHF+WK   N +PT  NL  +G+ ++++C  C G   ET  H L  CKR++E W
Subjt:  IKHFIWKAINNIVPTRCNLISKGLTIEDVCPMC-GKGEETIEHTLLTCKRAREFW

A0A803QQT2 Uncharacterized protein

6.1e-58

41.57

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Query:  GGLNFRDFEGFNQALLAKQVWRCLTALDILVSKLLRAKYFPNSTCLEAELGLRPLYFWKSFIWGRELLVKGLRRRVGDGKSIRAFRDGWLPRLSMFKPLV
        GGL FRD   FNQALLAKQ+WRCL    +L S++L+A YFP    LEA  G    + W+S +WG++L++KG R RVG+G+S+R   D WLPR   FK   
Subjt:  GGLNFRDFEGFNQALLAKQVWRCLTALDILVSKLLRAKYFPNSTCLEAELGLRPLYFWKSFIWGRELLVKGLRRRVGDGKSIRAFRDGWLPRLSMFKPLV

Query:  VPPLSQDLTVADFIRLDRSWDNNMLQNWFCREDVDIIRRLPLGLMSTEDGWVWHYDKKGVFNVKSGYKFFMHLKLESSSLNQEATKRSWRNLWKLSIPPK
         P L  +L V D    D  WD   +++ F   DVD+I  +P      ED  +WHY K G ++VKSGY+       E    N+ +  + W+ LW+L IPPK
Subjt:  VPPLSQDLTVADFIRLDRSWDNNMLQNWFCREDVDIIRRLPLGLMSTEDGWVWHYDKKGVFNVKSGYKFFMHLKLESSSLNQEATKRSWRNLWKLSIPPK

Query:  IKHFIWKAINNIVPTRCNLISKGLTIEDVCPMCGKG-EETIEHTLLTCKRAREFW
        +KHF+WK  +N +P   NL  +G+    VC  C    +E++ H L  CK ++ +W
Subjt:  IKHFIWKAINNIVPTRCNLISKGLTIEDVCPMCGKG-EETIEHTLLTCKRAREFW

SwissProt top hits

e value

%identity

Alignment

P0C2F6 Putative ribonuclease H protein At1g65750

2.5e-16

26.69

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Query:  GGLNFRDFEGFNQALLAKQVWRCLTALDILVSKLLRAKYFPNSTCLEAELGLRPLYFWKS-----FIWGRELLVKGLRRRVGDGKSIRAFRDGWLPRLSM
        GGL  R  +  N+AL++K  WR L   + L + +L+ KY      +     L P   W S      I  R+++  G+    GDG+ IR + D W+     
Subjt:  GGLNFRDFEGFNQALLAKQVWRCLTALDILVSKLLRAKYFPNSTCLEAELGLRPLYFWKS-----FIWGRELLVKGLRRRVGDGKSIRAFRDGWLPRLSM

Query:  FKPLV-----VPPLSQDLTVA-DFIRLDRSWDNNMLQNWFCREDVDIIRRLPLGLMS-TEDGWVWHYDKKGVFNVKSGYKFFMHLKLESSSLNQEATKRS
         KPL+       P   D  VA D     R WD   +  +        +R + L L++   D   W + + G F+V+S Y+      L    + +      
Subjt:  FKPLV-----VPPLSQDLTVA-DFIRLDRSWDNNMLQNWFCREDVDIIRRLPLGLMS-TEDGWVWHYDKKGVFNVKSGYKFFMHLKLESSSLNQEATKRS

Query:  WRNLWKLSIPPKIKHFIWKAINNIVPTRCNLISKGLTIEDVCPMCGKGEETIEHTLLTCKRAREFW
        +  LWK+ +P ++K F+W   N  V T      + L+  +VC +C  G E++ H L  C      W
Subjt:  WRNLWKLSIPPKIKHFIWKAINNIVPTRCNLISKGLTIEDVCPMCGKGEETIEHTLLTCKRAREFW

P93295 Uncharacterized mitochondrial protein AtMg00310

3.7e-20

48.48

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Query:  GGLNFRDFEGFNQALLAKQVWRCLTALDILVSKLLRAKYFPNSTCLEAELGLRPLYFWKSFIWGRELLVKGLRRRVGDGKSIRAFRDGWLPRLSMFKPL
        GGL FRD   FNQALLAKQ +R +     L+S+LLR++YFP+S+ +E  +G RP Y W+S I GRELL +GL R +GDG   + + D W+   +   PL
Subjt:  GGLNFRDFEGFNQALLAKQVWRCLTALDILVSKLLRAKYFPNSTCLEAELGLRPLYFWKSFIWGRELLVKGLRRRVGDGKSIRAFRDGWLPRLSMFKPL

Arabidopsis top hits

e value

%identity

Alignment

AT2G02650.1 Ribonuclease H-like superfamily protein

1.0e-09

34.92

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Query:  LWKLSIPPKIKHFIWKAINNIVPTRCNLISKGLTIEDVCPMCGKGEETIEHTLLTCKRAREFW
        +WKL + PKIKHF+W+ +   + T   L S+ +  + +C  C   EETI H +  C   +  W
Subjt:  LWKLSIPPKIKHFIWKAINNIVPTRCNLISKGLTIEDVCPMCGKGEETIEHTLLTCKRAREFW

AT3G09510.1 Ribonuclease H-like superfamily protein

3.2e-27

29.26

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Query:  LRAKYFPNSTCLEAELGLRPLYFWKSFIWGRELLVKGLRRRVGDGKSIRAFRDGWLPRLSMFKPLVVPPLSQDLTVADFIRLDRS---WDNNMLQNWFCR
        ++A+YF + + L+A++  +  Y W S + G  LL KG R  +GDG++IR   D  +      +PL      +++T+ +      S   WD++ +  +  +
Subjt:  LRAKYFPNSTCLEAELGLRPLYFWKSFIWGRELLVKGLRRRVGDGKSIRAFRDGWLPRLSMFKPLVVPPLSQDLTVADFIRLDRS---WDNNMLQNWFCR

Query:  EDVDIIRRLPLGLMSTEDGWVWHYDKKGVFNVKSGYKFFMHLKLESSSLNQEATKRSW------RNLWKLSIPPKIKHFIWKAINNIVPTRCNLISKGLT
         D   I R+ L      D  +W+Y+  G + V+SGY    H      S N  A             +W L I PK+KHF+W+A++  + T   L ++G+ 
Subjt:  EDVDIIRRLPLGLMSTEDGWVWHYDKKGVFNVKSGYKFFMHLKLESSSLNQEATKRSW------RNLWKLSIPPKIKHFIWKAINNIVPTRCNLISKGLT

Query:  IEDVCPMCGKGEETIEHTLLTCKRAREFW
        I+  CP C +  E+I H L TC  A   W
Subjt:  IEDVCPMCGKGEETIEHTLLTCKRAREFW

AT3G26855.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein

3.0e-09

44.26

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Query:  NLWKLSIPPKIKHFIWKAINNIVPTRCNLISKGLTIEDVCPMCGKGEETIEHTLLTCKRAR
        ++W L I PKIK  IWKA+NN +P    L+S+ ++IE  C  C +  ETI H L  C  A+
Subjt:  NLWKLSIPPKIKHFIWKAINNIVPTRCNLISKGLTIEDVCPMCGKGEETIEHTLLTCKRAR

AT4G29090.1 Ribonuclease H-like superfamily protein

9.6e-40

34.46

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Query:  GGLNFRDFEGFNQALLAKQVWRCLTALDILVSKLLRAKYFPNSTCLEAELGLRPLYFWKSFIWGRELLVKGLRRRVGDGKSIRAFRDGWL---PRLSMFK
        GG+ F+D E FN ALL KQ+WR L+  + L++K+ +++YF  S  L A LG RP + WKS    +E+L +G R  VG+G+ I  +R  WL   P  +  +
Subjt:  GGLNFRDFEGFNQALLAKQVWRCLTALDILVSKLLRAKYFPNSTCLEAELGLRPLYFWKSFIWGRELLVKGLRRRVGDGKSIRAFRDGWL---PRLSMFK

Query:  PLVVPP-----LSQDLTVADFI-RLDRSWDNNMLQNWFCREDVDIIRRLPLGLMSTEDGWVWHYDKKGVFNVKSGYKFFMHLKLESSSLNQEATKRS---
           VPP     +S  L V+D I    R W  ++++  F   +  +I  L  G     D + W Y   G + VKSGY     + +   S  QE ++ S   
Subjt:  PLVVPP-----LSQDLTVADFI-RLDRSWDNNMLQNWFCREDVDIIRRLPLGLMSTEDGWVWHYDKKGVFNVKSGYKFFMHLKLESSSLNQEATKRS---

Query:  -WRNLWKLSIPPKIKHFIWKAINNIVPTRCNLISKGLTIEDVCPMCGKGEETIEHTLLTCKRAREFW
         ++ +WK    PKI+HF+WK ++N +P    L  + L+ E  C  C   +ET+ H L  C  AR  W
Subjt:  -WRNLWKLSIPPKIKHFIWKAINNIVPTRCNLISKGLTIEDVCPMCGKGEETIEHTLLTCKRAREFW

ATMG00310.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein

2.6e-21

48.48

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Query:  GGLNFRDFEGFNQALLAKQVWRCLTALDILVSKLLRAKYFPNSTCLEAELGLRPLYFWKSFIWGRELLVKGLRRRVGDGKSIRAFRDGWLPRLSMFKPL
        GGL FRD   FNQALLAKQ +R +     L+S+LLR++YFP+S+ +E  +G RP Y W+S I GRELL +GL R +GDG   + + D W+   +   PL
Subjt:  GGLNFRDFEGFNQALLAKQVWRCLTALDILVSKLLRAKYFPNSTCLEAELGLRPLYFWKSFIWGRELLVKGLRRRVGDGKSIRAFRDGWLPRLSMFKPL

Sequences

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CDS sequence

Show/hide CDS sequence

GGTGGTTTAAATTTTCGAGACTTCGAAGGTTTTAACCAAGCGCTCTTGGCCAAACAGGTGTGGAGGTGTTTGACAGCCCTAGATATCTTGGTTTCTAAACTGCTCCGAGC
AAAATACTTTCCTAATTCTACCTGTTTGGAGGCTGAGTTGGGGTTAAGACCTTTATACTTTTGGAAAAGCTTTATTTGGGGAAGAGAGTTGTTGGTTAAAGGCCTCCGTA
GGAGAGTGGGGGATGGAAAGTCTATCAGAGCGTTTAGGGATGGTTGGTTGCCTAGGCTGTCTATGTTTAAACCTCTGGTGGTGCCTCCTTTATCTCAGGACCTTACGGTT
GCAGACTTTATTCGGCTTGATAGGAGTTGGGACAATAATATGCTTCAGAATTGGTTTTGTCGGGAAGATGTGGATATAATTAGAAGATTACCGCTGGGACTGATGTCGAC
GGAGGACGGGTGGGTGTGGCACTATGATAAGAAGGGGGTCTTCAATGTCAAGAGTGGATATAAGTTTTTTATGCATCTTAAACTAGAATCTTCATCTTTAAATCAGGAAG
CCACTAAAAGATCGTGGAGAAATCTATGGAAACTTAGTATTCCGCCTAAAATTAAGCATTTTATATGGAAAGCGATAAACAATATTGTTCCTACAAGATGCAACCTAATC
TCGAAAGGGTTAACTATTGAGGATGTTTGTCCTATGTGTGGTAAGGGTGAAGAGACGATTGAGCATACCTTGTTGACATGCAAGCGGGCACGCGAATTTTGG

mRNA sequence

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Protein sequence

Show/hide protein sequence

GGLNFRDFEGFNQALLAKQVWRCLTALDILVSKLLRAKYFPNSTCLEAELGLRPLYFWKSFIWGRELLVKGLRRRVGDGKSIRAFRDGWLPRLSMFKPLVVPPLSQDLTV
ADFIRLDRSWDNNMLQNWFCREDVDIIRRLPLGLMSTEDGWVWHYDKKGVFNVKSGYKFFMHLKLESSSLNQEATKRSWRNLWKLSIPPKIKHFIWKAINNIVPTRCNLI
SKGLTIEDVCPMCGKGEETIEHTLLTCKRAREFW

MS023617 (gene) of Bitter gourd (TR) v1 genome