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MS023618 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS023618
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionReverse transcriptase
Genome locationscaffold155:701804..702007
RNA-Seq ExpressionMS023618
SyntenyMS023618
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0140640 - catalytic activity, acting on a nucleic acid (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
EEC84982.1 hypothetical protein OsI_32248 [Oryza sativa Indica Group]5.1e-1452.94Show/hide
Query:  AFILERSIHDNIIIGHECLHYIMGKKTSLDGFAALNLDLSKVYDHVEWVFLEKIMAKLGFADGWVEKI
        AF+ +R I DN+++ +E  H++  K+T  +G+AAL LD+SK YD VEW FLEK+M +LGFA+GWV+ I
Subjt:  AFILERSIHDNIIIGHECLHYIMGKKTSLDGFAALNLDLSKVYDHVEWVFLEKIMAKLGFADGWVEKI
KAA3470588.1 reverse transcriptase [Gossypium australe]1.7e-1457.35Show/hide
Query:  AFILERSIHDNIIIGHECLHYIMGKKTSLDGFAALNLDLSKVYDHVEWVFLEKIMAKLGFADGWVEKI
        AFIL R IHDNI+I HE +HY+   K   +    + LD+SK YDHVEW FLEK+M  LGF D WV+KI
Subjt:  AFILERSIHDNIIIGHECLHYIMGKKTSLDGFAALNLDLSKVYDHVEWVFLEKIMAKLGFADGWVEKI
XP_022143493.1 uncharacterized protein LOC111013370 [Momordica charantia]5.4e-1661.76Show/hide
Query:  AFILERSIHDNIIIGHECLHYIMGKKTSLDGFAALNLDLSKVYDHVEWVFLEKIMAKLGFADGWVEKI
        AFIL R+I DNIIIGHECLH+I  +KT   G AAL LDLSK +D VEW ++E++M K GFA  WV  I
Subjt:  AFILERSIHDNIIIGHECLHYIMGKKTSLDGFAALNLDLSKVYDHVEWVFLEKIMAKLGFADGWVEKI
XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]7.8e-1558.82Show/hide
Query:  AFILERSIHDNIIIGHECLHYIMGKKTSLDGFAALNLDLSKVYDHVEWVFLEKIMAKLGFADGWVEKI
        AF+  R+I DN+IIGHECLH I   K+ L G AAL LDLSK +D VEW +LE IM K+GF +GW++ I
Subjt:  AFILERSIHDNIIIGHECLHYIMGKKTSLDGFAALNLDLSKVYDHVEWVFLEKIMAKLGFADGWVEKI
XP_040249920.1 uncharacterized protein LOC109742703 isoform X1 [Aegilops tauschii subsp. strangulata]2.5e-1351.47Show/hide
Query:  AFILERSIHDNIIIGHECLHYIMGKKTSLDGFAALNLDLSKVYDHVEWVFLEKIMAKLGFADGWVEKI
        AF+  R I DNI++ +EC HY+  K+T  DG+AA+ LD+SK YD VEW FLEK+M +LGF + W++ +
Subjt:  AFILERSIHDNIIIGHECLHYIMGKKTSLDGFAALNLDLSKVYDHVEWVFLEKIMAKLGFADGWVEKI
TrEMBL top hitse value%identityAlignment
A0A5B6VNM6 Reverse transcriptase8.5e-1557.35Show/hide
Query:  AFILERSIHDNIIIGHECLHYIMGKKTSLDGFAALNLDLSKVYDHVEWVFLEKIMAKLGFADGWVEKI
        AFIL R IHDNI+I HE +HY+   K   +    + LD+SK YDHVEW FLEK+M  LGF D WV+KI
Subjt:  AFILERSIHDNIIIGHECLHYIMGKKTSLDGFAALNLDLSKVYDHVEWVFLEKIMAKLGFADGWVEKI
A0A6J1CQU9 uncharacterized protein LOC1110133702.6e-1661.76Show/hide
Query:  AFILERSIHDNIIIGHECLHYIMGKKTSLDGFAALNLDLSKVYDHVEWVFLEKIMAKLGFADGWVEKI
        AFIL R+I DNIIIGHECLH+I  +KT   G AAL LDLSK +D VEW ++E++M K GFA  WV  I
Subjt:  AFILERSIHDNIIIGHECLHYIMGKKTSLDGFAALNLDLSKVYDHVEWVFLEKIMAKLGFADGWVEKI
A0A6J1DX30 uncharacterized protein LOC1110248743.8e-1558.82Show/hide
Query:  AFILERSIHDNIIIGHECLHYIMGKKTSLDGFAALNLDLSKVYDHVEWVFLEKIMAKLGFADGWVEKI
        AF+  R+I DN+IIGHECLH I   K+ L G AAL LDLSK +D VEW +LE IM K+GF +GW++ I
Subjt:  AFILERSIHDNIIIGHECLHYIMGKKTSLDGFAALNLDLSKVYDHVEWVFLEKIMAKLGFADGWVEKI
B8BE31 Reverse transcriptase domain-containing protein2.5e-1452.94Show/hide
Query:  AFILERSIHDNIIIGHECLHYIMGKKTSLDGFAALNLDLSKVYDHVEWVFLEKIMAKLGFADGWVEKI
        AF+ +R I DN+++ +E  H++  K+T  +G+AAL LD+SK YD VEW FLEK+M +LGFA+GWV+ I
Subjt:  AFILERSIHDNIIIGHECLHYIMGKKTSLDGFAALNLDLSKVYDHVEWVFLEKIMAKLGFADGWVEKI
B9FNE2 Reverse transcriptase domain-containing protein2.5e-1452.94Show/hide
Query:  AFILERSIHDNIIIGHECLHYIMGKKTSLDGFAALNLDLSKVYDHVEWVFLEKIMAKLGFADGWVEKI
        AF+ +R I DN+++ +E  H++  K+T  +G+AAL LD+SK YD VEW FLEK+M +LGFA+GWV+ I
Subjt:  AFILERSIHDNIIIGHECLHYIMGKKTSLDGFAALNLDLSKVYDHVEWVFLEKIMAKLGFADGWVEKI
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G20520.1 RNA binding;RNA-directed DNA polymerases2.2e-0736.76Show/hide
Query:  AFILERSIHDNIIIGHECLHYIMGKKTSLDGFAALNLDLSKVYDHVEWVFLEKIMAKLGFADGWVEKI
        +FI  R   DNI+   E +H  M +K  + G+  L LDL K YD + W +LE  +   GF + W+ +I
Subjt:  AFILERSIHDNIIIGHECLHYIMGKKTSLDGFAALNLDLSKVYDHVEWVFLEKIMAKLGFADGWVEKI

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GCCTTTATTCTAGAGAGGTCTATTCATGACAACATAATTATTGGGCATGAATGTTTGCATTATATTATGGGTAAGAAGACCAGTTTGGATGGTTTCGCAGCCTTAAATCT
TGACTTGAGCAAGGTGTACGATCATGTGGAATGGGTATTTTTGGAGAAAATCATGGCGAAGTTGGGTTTTGCTGATGGATGGGTGGAGAAAATT
mRNA sequenceShow/hide mRNA sequence
GCCTTTATTCTAGAGAGGTCTATTCATGACAACATAATTATTGGGCATGAATGTTTGCATTATATTATGGGTAAGAAGACCAGTTTGGATGGTTTCGCAGCCTTAAATCT
TGACTTGAGCAAGGTGTACGATCATGTGGAATGGGTATTTTTGGAGAAAATCATGGCGAAGTTGGGTTTTGCTGATGGATGGGTGGAGAAAATT
Protein sequenceShow/hide protein sequence
AFILERSIHDNIIIGHECLHYIMGKKTSLDGFAALNLDLSKVYDHVEWVFLEKIMAKLGFADGWVEKI