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MS023620 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS023620
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionCCHC-type domain-containing protein
Genome locationscaffold155:702946..703149
RNA-Seq ExpressionMS023620
SyntenyMS023620
Gene Ontology termsNA
InterPro domainsIPR036691 - Endonuclease/exonuclease/phosphatase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF4351405.1 hypothetical protein F8388_001025, partial [Cannabis sativa]1.9e-0847.62Show/hide
Query:  VDDCRLMDMEVDGDPFTWNNKRQKEKQIRGRLDRFLCNEAFSSLFHVIQVRNLDWVHSDHRAI
        +D C L+DM  +G  FTW NKRQ    ++ RLDR+ CN+ + +LF  ++V N D++HSDHR I
Subjt:  VDDCRLMDMEVDGDPFTWNNKRQKEKQIRGRLDRFLCNEAFSSLFHVIQVRNLDWVHSDHRAI

KAF4372682.1 hypothetical protein F8388_000849, partial [Cannabis sativa]2.4e-0847.62Show/hide
Query:  VDDCRLMDMEVDGDPFTWNNKRQKEKQIRGRLDRFLCNEAFSSLFHVIQVRNLDWVHSDHRAI
        +D C L+DM  +G  FTW NKRQ    ++ RLDR+ CN+ + +LF  ++V N D++HSDHR I
Subjt:  VDDCRLMDMEVDGDPFTWNNKRQKEKQIRGRLDRFLCNEAFSSLFHVIQVRNLDWVHSDHRAI

KAF4399953.1 hypothetical protein G4B88_021167 [Cannabis sativa]3.2e-0846.03Show/hide
Query:  DDCRLMDMEVDGDPFTWNNKRQKEKQIRGRLDRFLCNEAFSSLFHVIQVRNLDWVHSDHRAII
        ++C L+DM  +G  FTW NKRQ    ++ RLDR+ CN+ + +LF  ++V N D++HSDHR I+
Subjt:  DDCRLMDMEVDGDPFTWNNKRQKEKQIRGRLDRFLCNEAFSSLFHVIQVRNLDWVHSDHRAII

KAF4403400.1 hypothetical protein G4B88_008046 [Cannabis sativa]3.2e-0846.03Show/hide
Query:  DDCRLMDMEVDGDPFTWNNKRQKEKQIRGRLDRFLCNEAFSSLFHVIQVRNLDWVHSDHRAII
        ++C L+DM  +G  FTW NKRQ    ++ RLDR+ CN+ + +LF  ++V N D++HSDHR I+
Subjt:  DDCRLMDMEVDGDPFTWNNKRQKEKQIRGRLDRFLCNEAFSSLFHVIQVRNLDWVHSDHRAII

XP_030498017.1 uncharacterized protein LOC115713672 [Cannabis sativa]2.9e-0946.88Show/hide
Query:  VDDCRLMDMEVDGDPFTWNNKRQKEKQIRGRLDRFLCNEAFSSLFHVIQVRNLDWVHSDHRAII
        +D+C L+DM  +G  FTW NKR     ++ RLDR+ CN+ ++SLF  ++V N D++HSDHR I+
Subjt:  VDDCRLMDMEVDGDPFTWNNKRQKEKQIRGRLDRFLCNEAFSSLFHVIQVRNLDWVHSDHRAII

TrEMBL top hitse value%identityAlignment
A0A7J6DZ24 CCHC-type domain-containing protein9.1e-0947.62Show/hide
Query:  VDDCRLMDMEVDGDPFTWNNKRQKEKQIRGRLDRFLCNEAFSSLFHVIQVRNLDWVHSDHRAI
        +D C L+DM  +G  FTW NKRQ    ++ RLDR+ CN+ + +LF  ++V N D++HSDHR I
Subjt:  VDDCRLMDMEVDGDPFTWNNKRQKEKQIRGRLDRFLCNEAFSSLFHVIQVRNLDWVHSDHRAI

A0A7J6FPV7 CCHC-type domain-containing protein1.2e-0847.62Show/hide
Query:  VDDCRLMDMEVDGDPFTWNNKRQKEKQIRGRLDRFLCNEAFSSLFHVIQVRNLDWVHSDHRAI
        +D C L+DM  +G  FTW NKRQ    ++ RLDR+ CN+ + +LF  ++V N D++HSDHR I
Subjt:  VDDCRLMDMEVDGDPFTWNNKRQKEKQIRGRLDRFLCNEAFSSLFHVIQVRNLDWVHSDHRAI

A0A7J6GL46 CCHC-type domain-containing protein2.6e-0843.94Show/hide
Query:  NVVDDCRLMDMEVDGDPFTWNNKRQKEKQIRGRLDRFLCNEAFSSLFHVIQVRNLDWVHSDHRAII
        N +D C L D+  +G  FTW NKRQ    ++ RLDR+ CN+ +  LF  ++V N D+++SDHR I+
Subjt:  NVVDDCRLMDMEVDGDPFTWNNKRQKEKQIRGRLDRFLCNEAFSSLFHVIQVRNLDWVHSDHRAII

A0A7J6HXD3 CCHC-type domain-containing protein1.5e-0846.03Show/hide
Query:  DDCRLMDMEVDGDPFTWNNKRQKEKQIRGRLDRFLCNEAFSSLFHVIQVRNLDWVHSDHRAII
        ++C L+DM  +G  FTW NKRQ    ++ RLDR+ CN+ + +LF  ++V N D++HSDHR I+
Subjt:  DDCRLMDMEVDGDPFTWNNKRQKEKQIRGRLDRFLCNEAFSSLFHVIQVRNLDWVHSDHRAII

A0A7J6I9P4 CCHC-type domain-containing protein1.5e-0846.03Show/hide
Query:  DDCRLMDMEVDGDPFTWNNKRQKEKQIRGRLDRFLCNEAFSSLFHVIQVRNLDWVHSDHRAII
        ++C L+DM  +G  FTW NKRQ    ++ RLDR+ CN+ + +LF  ++V N D++HSDHR I+
Subjt:  DDCRLMDMEVDGDPFTWNNKRQKEKQIRGRLDRFLCNEAFSSLFHVIQVRNLDWVHSDHRAII

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AATGTTGTGGATGATTGTAGGCTTATGGATATGGAAGTGGACGGTGATCCGTTTACATGGAATAATAAACGTCAAAAGGAGAAGCAAATAAGGGGTCGGTTAGACAGATT
TTTATGTAACGAAGCTTTTTCTTCCTTGTTTCATGTGATACAGGTCCGCAATCTAGATTGGGTGCATTCGGATCATAGAGCCATAATAGTGGAG
mRNA sequenceShow/hide mRNA sequence
AATGTTGTGGATGATTGTAGGCTTATGGATATGGAAGTGGACGGTGATCCGTTTACATGGAATAATAAACGTCAAAAGGAGAAGCAAATAAGGGGTCGGTTAGACAGATT
TTTATGTAACGAAGCTTTTTCTTCCTTGTTTCATGTGATACAGGTCCGCAATCTAGATTGGGTGCATTCGGATCATAGAGCCATAATAGTGGAG
Protein sequenceShow/hide protein sequence
NVVDDCRLMDMEVDGDPFTWNNKRQKEKQIRGRLDRFLCNEAFSSLFHVIQVRNLDWVHSDHRAIIVE