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MS023628 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS023628
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionsuccinate dehydrogenase assembly factor 1, mitochondrial
Genome locationscaffold155:782847..783107
RNA-Seq ExpressionMS023628
SyntenyMS023628
Gene Ontology termsGO:0034553 - mitochondrial respiratory chain complex II assembly (biological process)
GO:0005739 - mitochondrion (cellular component)
InterPro domainsIPR008011 - Complex 1 LYR protein


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008459591.1 PREDICTED: succinate dehydrogenase assembly factor 1, mitochondrial [Cucumis melo]9.4e-2988.75Show/hide
Query:  KLSGLQKQVLSLYRGFLRAARSKSAEDRRQMESLVAAEFRRNADQIDRKNFIYIEYLLRRGNKQLDQLKSPATVRLSSMN
        KLSGLQKQVLSLYR FLRAAR+KS EDR+QMES+VAAEFRRNA QIDRKNFIYIEYLLRRGNKQLDQLKSPATVRLS+++
Subjt:  KLSGLQKQVLSLYRGFLRAARSKSAEDRRQMESLVAAEFRRNADQIDRKNFIYIEYLLRRGNKQLDQLKSPATVRLSSMN

XP_011656085.1 succinate dehydrogenase assembly factor 1, mitochondrial [Cucumis sativus]2.7e-2887.5Show/hide
Query:  KLSGLQKQVLSLYRGFLRAARSKSAEDRRQMESLVAAEFRRNADQIDRKNFIYIEYLLRRGNKQLDQLKSPATVRLSSMN
        KLSGLQKQVLSLYR FLRAAR+KS EDR+QMES+VA EFRRNA QIDRKNFIYIEYLLRRGNKQLDQLKSPATVRLS+++
Subjt:  KLSGLQKQVLSLYRGFLRAARSKSAEDRRQMESLVAAEFRRNADQIDRKNFIYIEYLLRRGNKQLDQLKSPATVRLSSMN

XP_022141880.1 succinate dehydrogenase assembly factor 1, mitochondrial [Momordica charantia]2.7e-3698.85Show/hide
Query:  RPKLSGLQKQVLSLYRGFLRAARSKSAEDRRQMESLVAAEFRRNADQIDRKNFIYIEYLLRRGNKQLDQLKSPATVRLSSMNVSNAR
        RPKLSGLQKQVLSLYRGFLRAARSKSAEDRRQMESLVAAEFRRNADQID KNFIYIEYLLRRGNKQLDQLKSPATVRLSSMNVSNAR
Subjt:  RPKLSGLQKQVLSLYRGFLRAARSKSAEDRRQMESLVAAEFRRNADQIDRKNFIYIEYLLRRGNKQLDQLKSPATVRLSSMNVSNAR

XP_038890134.1 succinate dehydrogenase assembly factor 1, mitochondrial [Benincasa hispida]1.6e-2888.75Show/hide
Query:  KLSGLQKQVLSLYRGFLRAARSKSAEDRRQMESLVAAEFRRNADQIDRKNFIYIEYLLRRGNKQLDQLKSPATVRLSSMN
        KLSGLQKQVLSLYR FLRAARSKSAEDRRQ+ES+VAAEFRRNA QIDRKNFI+IEYLLRRGNKQLDQLKSP TVR S++N
Subjt:  KLSGLQKQVLSLYRGFLRAARSKSAEDRRQMESLVAAEFRRNADQIDRKNFIYIEYLLRRGNKQLDQLKSPATVRLSSMN

XP_038999431.1 succinate dehydrogenase assembly factor 1, mitochondrial-like [Hibiscus syriacus]7.2e-2983.13Show/hide
Query:  KLSGLQKQVLSLYRGFLRAARSKSAEDRRQMESLVAAEFRRNADQIDRKNFIYIEYLLRRGNKQLDQLKSPATVRLSSMNVSN
        KLSG+QKQVLSLYRGFLRAARSK AEDRRQ+ES+V+AEFRRN++Q+DRKNF+YIEYLLRRGNKQLDQLKSP T+ LSS+NVS+
Subjt:  KLSGLQKQVLSLYRGFLRAARSKSAEDRRQMESLVAAEFRRNADQIDRKNFIYIEYLLRRGNKQLDQLKSPATVRLSSMNVSN

TrEMBL top hitse value%identityAlignment
A0A0A0KST3 Uncharacterized protein1.3e-2887.5Show/hide
Query:  KLSGLQKQVLSLYRGFLRAARSKSAEDRRQMESLVAAEFRRNADQIDRKNFIYIEYLLRRGNKQLDQLKSPATVRLSSMN
        KLSGLQKQVLSLYR FLRAAR+KS EDR+QMES+VA EFRRNA QIDRKNFIYIEYLLRRGNKQLDQLKSPATVRLS+++
Subjt:  KLSGLQKQVLSLYRGFLRAARSKSAEDRRQMESLVAAEFRRNADQIDRKNFIYIEYLLRRGNKQLDQLKSPATVRLSSMN

A0A1S3CAJ2 succinate dehydrogenase assembly factor 1, mitochondrial4.5e-2988.75Show/hide
Query:  KLSGLQKQVLSLYRGFLRAARSKSAEDRRQMESLVAAEFRRNADQIDRKNFIYIEYLLRRGNKQLDQLKSPATVRLSSMN
        KLSGLQKQVLSLYR FLRAAR+KS EDR+QMES+VAAEFRRNA QIDRKNFIYIEYLLRRGNKQLDQLKSPATVRLS+++
Subjt:  KLSGLQKQVLSLYRGFLRAARSKSAEDRRQMESLVAAEFRRNADQIDRKNFIYIEYLLRRGNKQLDQLKSPATVRLSSMN

A0A1U8KMI7 succinate dehydrogenase assembly factor 1, mitochondrial-like5.5e-2776.47Show/hide
Query:  KLSGLQKQVLSLYRGFLRAARSKSAEDRRQMESLVAAEFRRNADQIDRKNFIYIEYLLRRGNKQLDQLKSPATVRLSSMNVSNAR
        KLSG+Q+QVLSLYRGFLRAARSK  EDRRQ+ES+V+AEFR+N+ Q+DRKNF+YIEYLLRRG KQLDQLKSP T+ LSS NVS+++
Subjt:  KLSGLQKQVLSLYRGFLRAARSKSAEDRRQMESLVAAEFRRNADQIDRKNFIYIEYLLRRGNKQLDQLKSPATVRLSSMNVSNAR

A0A6J1CJC1 succinate dehydrogenase assembly factor 1, mitochondrial1.3e-3698.85Show/hide
Query:  RPKLSGLQKQVLSLYRGFLRAARSKSAEDRRQMESLVAAEFRRNADQIDRKNFIYIEYLLRRGNKQLDQLKSPATVRLSSMNVSNAR
        RPKLSGLQKQVLSLYRGFLRAARSKSAEDRRQMESLVAAEFRRNADQID KNFIYIEYLLRRGNKQLDQLKSPATVRLSSMNVSNAR
Subjt:  RPKLSGLQKQVLSLYRGFLRAARSKSAEDRRQMESLVAAEFRRNADQIDRKNFIYIEYLLRRGNKQLDQLKSPATVRLSSMNVSNAR

A0A7N2LDJ5 Uncharacterized protein2.9e-2881.93Show/hide
Query:  PKLSGLQKQVLSLYRGFLRAARSKSAEDRRQMESLVAAEFRRNADQIDRKNFIYIEYLLRRGNKQLDQLKSPATVRLSSMNVS
        PKLSG+QKQVLSLYRGFLRAARSKSAEDR ++ES+V+ EFRRN+ Q+DRKNF+YIEYLLRRG KQLDQLKSP TV LSS+NVS
Subjt:  PKLSGLQKQVLSLYRGFLRAARSKSAEDRRQMESLVAAEFRRNADQIDRKNFIYIEYLLRRGNKQLDQLKSPATVRLSSMNVS

SwissProt top hitse value%identityAlignment
A6NFY7 Succinate dehydrogenase assembly factor 1, mitochondrial3.0e-0650Show/hide
Query:  SGLQKQVLSLYRGFLRAARSKSAEDRRQMESLVAAEFRRNADQIDRKNFIYIEYLLRRGNKQLDQLKS
        S LQ+QVLSLYR  LRA R K   + R     V AEFR++A  + R + + IEYL RRG +QL  L+S
Subjt:  SGLQKQVLSLYRGFLRAARSKSAEDRRQMESLVAAEFRRNADQIDRKNFIYIEYLLRRGNKQLDQLKS

A8PU71 Succinate dehydrogenase assembly factor 1, mitochondrial5.2e-0650Show/hide
Query:  SGLQKQVLSLYRGFLRAARSKSAEDRRQMESLVAAEFRRNADQIDRKNFIYIEYLLRRGNKQLDQLKS
        S LQ+QVLSLYR  LRA R K   + R     V AEFR++A  + R + + IEYL RRG +QL  L+S
Subjt:  SGLQKQVLSLYRGFLRAARSKSAEDRRQMESLVAAEFRRNADQIDRKNFIYIEYLLRRGNKQLDQLKS

B0K036 Succinate dehydrogenase assembly factor 1, mitochondrial8.0e-0750Show/hide
Query:  KLSGLQKQVLSLYRGFLRAARSKSAEDRRQMESLVAAEFRRNADQIDRKNFIYIEYLLRRGNKQLDQLKS
        +LS LQ+QVLSLYR  LRA R K   + R     V AEFR++A  + R + + IEYL RRG +QL  L+S
Subjt:  KLSGLQKQVLSLYRGFLRAARSKSAEDRRQMESLVAAEFRRNADQIDRKNFIYIEYLLRRGNKQLDQLKS

Q54HG5 Succinate dehydrogenase assembly factor 1A, mitochondrial8.8e-0640Show/hide
Query:  SGLQKQVLSLYRGFLRAARSKSAED-RRQMESLVAAEFRRNADQIDRKNFIYIEYLLRRGNKQLDQLKSP
        SGLQK VLSLYR FLR +  K  ++    + + +  +FR  A  I +++   IE LL +G +QL+Q++ P
Subjt:  SGLQKQVLSLYRGFLRAARSKSAED-RRQMESLVAAEFRRNADQIDRKNFIYIEYLLRRGNKQLDQLKSP

Q9US02 Succinate dehydrogenase assembly factor 1, mitochondrial6.8e-0641.43Show/hide
Query:  LSGLQKQVLSLYRGFLRAARSKSAEDRRQMESLVAAEFRRNADQIDRKNFIYIEYLLRRGNKQLDQLKSP
        LSGLQ+QV+  YR  L AA++K      +  + V  EFR+N   I +++F YIE+LLR G +Q +    P
Subjt:  LSGLQKQVLSLYRGFLRAARSKSAEDRRQMESLVAAEFRRNADQIDRKNFIYIEYLLRRGNKQLDQLKSP

Arabidopsis top hitse value%identityAlignment
AT2G39725.1 LYR family of Fe/S cluster biogenesis protein7.9e-2668.24Show/hide
Query:  KLSGLQKQVLSLYRGFLRAARSKSAEDRRQMESLVAAEFRRNADQIDRKNFIYIEYLLRRGNKQLDQLKSPATVRLSSMNVSNAR
        KLSG+QKQVLSLYRGFLRAARS+  EDR+++E +V+ EFR N+ ++DRKNF YIEYLLR G KQLDQLKSPA V LSS+ V  ++
Subjt:  KLSGLQKQVLSLYRGFLRAARSKSAEDRRQMESLVAAEFRRNADQIDRKNFIYIEYLLRRGNKQLDQLKSPATVRLSSMNVSNAR

AT2G39725.2 LYR family of Fe/S cluster biogenesis protein7.9e-2668.24Show/hide
Query:  KLSGLQKQVLSLYRGFLRAARSKSAEDRRQMESLVAAEFRRNADQIDRKNFIYIEYLLRRGNKQLDQLKSPATVRLSSMNVSNAR
        KLSG+QKQVLSLYRGFLRAARS+  EDR+++E +V+ EFR N+ ++DRKNF YIEYLLR G KQLDQLKSPA V LSS+ V  ++
Subjt:  KLSGLQKQVLSLYRGFLRAARSKSAEDRRQMESLVAAEFRRNADQIDRKNFIYIEYLLRRGNKQLDQLKSPATVRLSSMNVSNAR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AGGCCGAAGCTTTCGGGGCTGCAAAAGCAGGTGCTCAGTCTCTACAGAGGATTTCTACGAGCGGCGCGCTCCAAATCCGCCGAAGATCGGCGGCAGATGGAATCGCTTGT
CGCCGCCGAGTTTCGCCGGAACGCCGACCAAATCGATCGCAAAAACTTCATCTACATCGAGTACCTCCTCCGCCGAGGTAACAAACAGCTGGATCAGCTCAAAAGCCCGG
CCACTGTTCGATTGTCGTCGATGAATGTCTCAAACGCCAGA
mRNA sequenceShow/hide mRNA sequence
AGGCCGAAGCTTTCGGGGCTGCAAAAGCAGGTGCTCAGTCTCTACAGAGGATTTCTACGAGCGGCGCGCTCCAAATCCGCCGAAGATCGGCGGCAGATGGAATCGCTTGT
CGCCGCCGAGTTTCGCCGGAACGCCGACCAAATCGATCGCAAAAACTTCATCTACATCGAGTACCTCCTCCGCCGAGGTAACAAACAGCTGGATCAGCTCAAAAGCCCGG
CCACTGTTCGATTGTCGTCGATGAATGTCTCAAACGCCAGA
Protein sequenceShow/hide protein sequence
RPKLSGLQKQVLSLYRGFLRAARSKSAEDRRQMESLVAAEFRRNADQIDRKNFIYIEYLLRRGNKQLDQLKSPATVRLSSMNVSNAR