; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS023655 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS023655
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionDEAD-box ATP-dependent RNA helicase 17
Genome locationscaffold570:24313..24983
RNA-Seq ExpressionMS023655
SyntenyMS023655
Gene Ontology termsGO:0003723 - RNA binding (molecular function)
GO:0003724 - RNA helicase activity (molecular function)
GO:0005524 - ATP binding (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsIPR011545 - DEAD/DEAH box helicase domain
IPR014014 - RNA helicase, DEAD-box type, Q motif
IPR027417 - P-loop containing nucleoside triphosphate hydrolase


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022154763.1 DEAD-box ATP-dependent RNA helicase 17 [Momordica charantia]7.0e-5099.06Show/hide
Query:  MNSSTKFMNEEVKTTKKKMGRESEIFASCTFSSLGLHSTLCDQLQEKMGFEVPTLVQAQAIPAILSGRHVIVNAATGTGKTIAYLVPIIHHLQKSGRRIQ
        MNSSTKFMNEEVKTTKKKMGRESEIFASCTFSSLGLHSTLCDQLQEKMGFEVPTLVQAQAI AILSGRHVIVNAATGTGKTIAYLVPIIHHLQKSGRRIQ
Subjt:  MNSSTKFMNEEVKTTKKKMGRESEIFASCTFSSLGLHSTLCDQLQEKMGFEVPTLVQAQAIPAILSGRHVIVNAATGTGKTIAYLVPIIHHLQKSGRRIQ

Query:  RADGTF
        RADGTF
Subjt:  RADGTF

XP_022946513.1 DEAD-box ATP-dependent RNA helicase 17 isoform X1 [Cucurbita moschata]2.3e-4085.86Show/hide
Query:  MNEEVKTTKKKMGRESEIFASCTFSSLGLHSTLCDQLQEKMGFEVPTLVQAQAIPAILSGRHVIVNAATGTGKTIAYLVPIIHHLQKSGRRIQRADGTF
        MNE +KTT KKM +E EIFASCTF+SLGLH+TLCD+L++KMGFEVPTLVQAQAIPAILSGRHV+VNAATGTGKT+AYLVPIIHHLQKS RRIQRADGTF
Subjt:  MNEEVKTTKKKMGRESEIFASCTFSSLGLHSTLCDQLQEKMGFEVPTLVQAQAIPAILSGRHVIVNAATGTGKTIAYLVPIIHHLQKSGRRIQRADGTF

XP_022946514.1 DEAD-box ATP-dependent RNA helicase 17 isoform X2 [Cucurbita moschata]2.3e-4085.86Show/hide
Query:  MNEEVKTTKKKMGRESEIFASCTFSSLGLHSTLCDQLQEKMGFEVPTLVQAQAIPAILSGRHVIVNAATGTGKTIAYLVPIIHHLQKSGRRIQRADGTF
        MNE +KTT KKM +E EIFASCTF+SLGLH+TLCD+L++KMGFEVPTLVQAQAIPAILSGRHV+VNAATGTGKT+AYLVPIIHHLQKS RRIQRADGTF
Subjt:  MNEEVKTTKKKMGRESEIFASCTFSSLGLHSTLCDQLQEKMGFEVPTLVQAQAIPAILSGRHVIVNAATGTGKTIAYLVPIIHHLQKSGRRIQRADGTF

XP_022975310.1 DEAD-box ATP-dependent RNA helicase 17 isoform X1 [Cucurbita maxima]2.3e-4085.86Show/hide
Query:  MNEEVKTTKKKMGRESEIFASCTFSSLGLHSTLCDQLQEKMGFEVPTLVQAQAIPAILSGRHVIVNAATGTGKTIAYLVPIIHHLQKSGRRIQRADGTF
        MNE +KTT KKM +E EIFASCTF+SLGLH+TLCD+L++KMGFEVPTLVQAQAIPAILSGRHV+VNAATGTGKT+AYLVPIIHHLQKS RRIQRADGTF
Subjt:  MNEEVKTTKKKMGRESEIFASCTFSSLGLHSTLCDQLQEKMGFEVPTLVQAQAIPAILSGRHVIVNAATGTGKTIAYLVPIIHHLQKSGRRIQRADGTF

XP_022975312.1 DEAD-box ATP-dependent RNA helicase 17 isoform X2 [Cucurbita maxima]2.3e-4085.86Show/hide
Query:  MNEEVKTTKKKMGRESEIFASCTFSSLGLHSTLCDQLQEKMGFEVPTLVQAQAIPAILSGRHVIVNAATGTGKTIAYLVPIIHHLQKSGRRIQRADGTF
        MNE +KTT KKM +E EIFASCTF+SLGLH+TLCD+L++KMGFEVPTLVQAQAIPAILSGRHV+VNAATGTGKT+AYLVPIIHHLQKS RRIQRADGTF
Subjt:  MNEEVKTTKKKMGRESEIFASCTFSSLGLHSTLCDQLQEKMGFEVPTLVQAQAIPAILSGRHVIVNAATGTGKTIAYLVPIIHHLQKSGRRIQRADGTF

TrEMBL top hitse value%identityAlignment
A0A0A0LKK2 Q_MOTIF domain-containing protein2.2e-4182.24Show/hide
Query:  MNSSTKFMNEEVKTTKKKMGRESEIFASCTFSSLGLHSTLCDQLQEKMGFEVPTLVQAQAIPAILSGRHVIVNAATGTGKTIAYLVPIIHHLQKSGRRIQ
        M+SS K+ NE VKTT KKM +E E+FASCTF+SLGL STLCDQL++KMGFEVPTLVQAQAIPAILS RHV+VNAATGTGKT+AYLVPIIHHLQKS RR Q
Subjt:  MNSSTKFMNEEVKTTKKKMGRESEIFASCTFSSLGLHSTLCDQLQEKMGFEVPTLVQAQAIPAILSGRHVIVNAATGTGKTIAYLVPIIHHLQKSGRRIQ

Query:  RADGTFG
        RADGTFG
Subjt:  RADGTFG

A0A6J1DL75 DEAD-box ATP-dependent RNA helicase 173.4e-5099.06Show/hide
Query:  MNSSTKFMNEEVKTTKKKMGRESEIFASCTFSSLGLHSTLCDQLQEKMGFEVPTLVQAQAIPAILSGRHVIVNAATGTGKTIAYLVPIIHHLQKSGRRIQ
        MNSSTKFMNEEVKTTKKKMGRESEIFASCTFSSLGLHSTLCDQLQEKMGFEVPTLVQAQAI AILSGRHVIVNAATGTGKTIAYLVPIIHHLQKSGRRIQ
Subjt:  MNSSTKFMNEEVKTTKKKMGRESEIFASCTFSSLGLHSTLCDQLQEKMGFEVPTLVQAQAIPAILSGRHVIVNAATGTGKTIAYLVPIIHHLQKSGRRIQ

Query:  RADGTF
        RADGTF
Subjt:  RADGTF

A0A6J1G427 DEAD-box ATP-dependent RNA helicase 17 isoform X11.1e-4085.86Show/hide
Query:  MNEEVKTTKKKMGRESEIFASCTFSSLGLHSTLCDQLQEKMGFEVPTLVQAQAIPAILSGRHVIVNAATGTGKTIAYLVPIIHHLQKSGRRIQRADGTF
        MNE +KTT KKM +E EIFASCTF+SLGLH+TLCD+L++KMGFEVPTLVQAQAIPAILSGRHV+VNAATGTGKT+AYLVPIIHHLQKS RRIQRADGTF
Subjt:  MNEEVKTTKKKMGRESEIFASCTFSSLGLHSTLCDQLQEKMGFEVPTLVQAQAIPAILSGRHVIVNAATGTGKTIAYLVPIIHHLQKSGRRIQRADGTF

A0A6J1ICQ6 DEAD-box ATP-dependent RNA helicase 17 isoform X21.1e-4085.86Show/hide
Query:  MNEEVKTTKKKMGRESEIFASCTFSSLGLHSTLCDQLQEKMGFEVPTLVQAQAIPAILSGRHVIVNAATGTGKTIAYLVPIIHHLQKSGRRIQRADGTF
        MNE +KTT KKM +E EIFASCTF+SLGLH+TLCD+L++KMGFEVPTLVQAQAIPAILSGRHV+VNAATGTGKT+AYLVPIIHHLQKS RRIQRADGTF
Subjt:  MNEEVKTTKKKMGRESEIFASCTFSSLGLHSTLCDQLQEKMGFEVPTLVQAQAIPAILSGRHVIVNAATGTGKTIAYLVPIIHHLQKSGRRIQRADGTF

A0A6J1IGD1 DEAD-box ATP-dependent RNA helicase 17 isoform X11.1e-4085.86Show/hide
Query:  MNEEVKTTKKKMGRESEIFASCTFSSLGLHSTLCDQLQEKMGFEVPTLVQAQAIPAILSGRHVIVNAATGTGKTIAYLVPIIHHLQKSGRRIQRADGTF
        MNE +KTT KKM +E EIFASCTF+SLGLH+TLCD+L++KMGFEVPTLVQAQAIPAILSGRHV+VNAATGTGKT+AYLVPIIHHLQKS RRIQRADGTF
Subjt:  MNEEVKTTKKKMGRESEIFASCTFSSLGLHSTLCDQLQEKMGFEVPTLVQAQAIPAILSGRHVIVNAATGTGKTIAYLVPIIHHLQKSGRRIQRADGTF

SwissProt top hitse value%identityAlignment
A5DDF4 Pre-mRNA-processing ATP-dependent RNA helicase PRP54.6e-1241.56Show/hide
Query:  FSSLGLHSTLCDQLQEKMGFEVPTLVQAQAIPAILSGRHVIVNAATGTGKTIAYLVPIIHHLQKSGRRIQRADGTFG
        ++ LGL S++   L+EK+G++ P+ +Q+QA+PAI+SGR +I  A TG+GKT+A+++P+I H+      ++  DG  G
Subjt:  FSSLGLHSTLCDQLQEKMGFEVPTLVQAQAIPAILSGRHVIVNAATGTGKTIAYLVPIIHHLQKSGRRIQRADGTFG

Q0DLB9 DEAD-box ATP-dependent RNA helicase 177.3e-2656.7Show/hide
Query:  KTTKKKMGRESE---IFASCTFSSLGLHSTLCDQLQEKMGFEVPTLVQAQAIPAILSGRHVIVNAATGTGKTIAYLVPIIHHLQKSGRRIQRADGTF
        K  K  + +E +   +FASC+F+ LGLH TLC  LQ+KMGF+ PT +QAQAIP  +SG+H++V AATGTGKT+AYL PI+H LQ    R++R DGTF
Subjt:  KTTKKKMGRESE---IFASCTFSSLGLHSTLCDQLQEKMGFEVPTLVQAQAIPAILSGRHVIVNAATGTGKTIAYLVPIIHHLQKSGRRIQRADGTF

Q7XJN0 DEAD-box ATP-dependent RNA helicase 173.0e-2758.49Show/hide
Query:  MNSSTKFMNEEVKTTKKKMGRESEIFASCTFSSLGLHSTLCDQLQEKMGFEVPTLVQAQAIPAILSGRHVIVNAATGTGKTIAYLVPIIHHLQKSGRRIQ
        M  + +   E  +  K     +S +FASC+FSSLGL + L DQL+E+MGFE PTLVQAQAIP ILSGR V+VNA TGTGKTIAYL P+IHHLQ    ++ 
Subjt:  MNSSTKFMNEEVKTTKKKMGRESEIFASCTFSSLGLHSTLCDQLQEKMGFEVPTLVQAQAIPAILSGRHVIVNAATGTGKTIAYLVPIIHHLQKSGRRIQ

Query:  RADGTF
        R+ GTF
Subjt:  RADGTF

Q8W4E1 DEAD-box ATP-dependent RNA helicase 47, mitochondrial4.6e-1243.02Show/hide
Query:  NEEVKTTKKKMGRE--SEIFASCTFSSLGLHSTLCDQLQEKMGFEVPTLVQAQAIPAILSGRHVIVNAATGTGKTIAYLVPIIHHL
        N+++K  K+K   E  S +F++ +F  LGL  +L D L E+ GF VPT VQ+ A+PAI+ G   ++ + TG+GKT+AYL+PI+  +
Subjt:  NEEVKTTKKKMGRE--SEIFASCTFSSLGLHSTLCDQLQEKMGFEVPTLVQAQAIPAILSGRHVIVNAATGTGKTIAYLVPIIHHL

Q9H8H2 Probable ATP-dependent RNA helicase DDX311.2e-1238.82Show/hide
Query:  ESEIFASCTFSSLGLHSTLCDQLQEKMGFEVPTLVQAQAIPAILSGRHVIVNAATGTGKTIAYLVPIIHHLQKSGRRIQRADGTF
        + ++F S  F  LGLH  L   +   +     T VQ Q+IP +L GR  +V + TG+GKT+AY +P++  LQ    +IQR+DG +
Subjt:  ESEIFASCTFSSLGLHSTLCDQLQEKMGFEVPTLVQAQAIPAILSGRHVIVNAATGTGKTIAYLVPIIHHLQKSGRRIQRADGTF

Arabidopsis top hitse value%identityAlignment
AT1G12770.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein3.3e-1343.02Show/hide
Query:  NEEVKTTKKKMGRE--SEIFASCTFSSLGLHSTLCDQLQEKMGFEVPTLVQAQAIPAILSGRHVIVNAATGTGKTIAYLVPIIHHL
        N+++K  K+K   E  S +F++ +F  LGL  +L D L E+ GF VPT VQ+ A+PAI+ G   ++ + TG+GKT+AYL+PI+  +
Subjt:  NEEVKTTKKKMGRE--SEIFASCTFSSLGLHSTLCDQLQEKMGFEVPTLVQAQAIPAILSGRHVIVNAATGTGKTIAYLVPIIHHL

AT2G40700.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein2.1e-2858.49Show/hide
Query:  MNSSTKFMNEEVKTTKKKMGRESEIFASCTFSSLGLHSTLCDQLQEKMGFEVPTLVQAQAIPAILSGRHVIVNAATGTGKTIAYLVPIIHHLQKSGRRIQ
        M  + +   E  +  K     +S +FASC+FSSLGL + L DQL+E+MGFE PTLVQAQAIP ILSGR V+VNA TGTGKTIAYL P+IHHLQ    ++ 
Subjt:  MNSSTKFMNEEVKTTKKKMGRESEIFASCTFSSLGLHSTLCDQLQEKMGFEVPTLVQAQAIPAILSGRHVIVNAATGTGKTIAYLVPIIHHLQKSGRRIQ

Query:  RADGTF
        R+ GTF
Subjt:  RADGTF

AT2G47330.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein4.4e-1041.03Show/hide
Query:  TFSSLGLHSTLCDQLQEKMGFEVPTLVQAQAIPAILSGRHVIVNAATGTGKTIAYLVPIIHHLQKSGRRIQRADGTFG
        TF   G  S +   + +K  +E PT +Q QA+P +LSGR VI  A TG+GKT A+++P+I H+      +QR +G  G
Subjt:  TFSSLGLHSTLCDQLQEKMGFEVPTLVQAQAIPAILSGRHVIVNAATGTGKTIAYLVPIIHHLQKSGRRIQRADGTFG

AT3G09620.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein2.9e-0941.1Show/hide
Query:  GLHSTLCDQLQEKMGFEVPTLVQAQAIPAILSGRHVIVNAATGTGKTIAYLVPIIHHLQKSGRRIQRADGTFG
        GL S + D L +K+ +E P  +QAQA+P I+SGR  I  A TG+GKT+ +++P++ H+ K    ++  DG  G
Subjt:  GLHSTLCDQLQEKMGFEVPTLVQAQAIPAILSGRHVIVNAATGTGKTIAYLVPIIHHLQKSGRRIQRADGTFG

AT4G34910.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein2.3e-1143.37Show/hide
Query:  EEVKTTKKKMGRESEIFASCTFSSLGLHSTLCDQLQEKMGFEVPTLVQAQAIPAILSGRHVIVNAATGTGKTIAYLVPIIHHL
        EE +  +++   + E  A  +F  LGL S L   L +K G E PTL+Q  AIP IL G+ V+  A TG+GKT+AYL+P++  L
Subjt:  EEVKTTKKKMGRESEIFASCTFSSLGLHSTLCDQLQEKMGFEVPTLVQAQAIPAILSGRHVIVNAATGTGKTIAYLVPIIHHL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATAGCAGCACCAAATTTATGAACGAAGAGGTGAAGACGACGAAGAAGAAAATGGGTAGGGAGAGCGAGATTTTTGCTTCTTGTACTTTCTCTAGCCTCGGTCTGCA
CTCTACTTTATGCGACCAACTCCAAGAGAAAATGGGATTTGAAGTACCAACCCTTGTACAGGCTCAAGCAATTCCGGCTATCTTGTCCGGGCGTCACGTCATTGTTAATG
CGGCCACGGGTACTGGCAAAACTATTGCGTATTTGGTTCCAATCATCCATCACTTGCAGAAGTCCGGTCGTAGGATTCAGCGGGCTGATGGAACTTTCGGTACG
mRNA sequenceShow/hide mRNA sequence
ATGAATAGCAGCACCAAATTTATGAACGAAGAGGTGAAGACGACGAAGAAGAAAATGGGTAGGGAGAGCGAGATTTTTGCTTCTTGTACTTTCTCTAGCCTCGGTCTGCA
CTCTACTTTATGCGACCAACTCCAAGAGAAAATGGGATTTGAAGTACCAACCCTTGTACAGGCTCAAGCAATTCCGGCTATCTTGTCCGGGCGTCACGTCATTGTTAATG
CGGCCACGGGTACTGGCAAAACTATTGCGTATTTGGTTCCAATCATCCATCACTTGCAGAAGTCCGGTCGTAGGATTCAGCGGGCTGATGGAACTTTCGGTACG
Protein sequenceShow/hide protein sequence
MNSSTKFMNEEVKTTKKKMGRESEIFASCTFSSLGLHSTLCDQLQEKMGFEVPTLVQAQAIPAILSGRHVIVNAATGTGKTIAYLVPIIHHLQKSGRRIQRADGTFGT