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MS023676 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS023676
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionprotein ELF4-LIKE 3-like isoform X2
Genome locationscaffold570:194302..194607
RNA-Seq ExpressionMS023676
SyntenyMS023676
Gene Ontology termsGO:0042753 - positive regulation of circadian rhythm (biological process)
GO:0005634 - nucleus (cellular component)
InterPro domainsIPR009741 - Protein EARLY FLOWERING 4 domain
IPR040462 - Protein EARLY FLOWERING 4


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6586485.1 Protein ELF4-LIKE 3, partial [Cucurbita argyrosperma subsp. sororia]9.0e-3170.94Show/hide
Query:  MEGETFSISGGAVGNGRAIDGKMVQTFQKKLVEVENILDQNRLLINEINQNQESKMADNLGRNVGLIRELNNNIRRVVDLYADL----TKSMEPD-----
        MEGET S SGG VGNG  I+G MVQTFQK  V+V+ ILDQNR+LINEINQNQESKM  NL RNVGLIRELNNNIRRVVDLYA L    TKSMEP      
Subjt:  MEGETFSISGGAVGNGRAIDGKMVQTFQKKLVEVENILDQNRLLINEINQNQESKMADNLGRNVGLIRELNNNIRRVVDLYADL----TKSMEPD-----

Query:  ------AKPGHKRIRPP
              AKPGHKR RPP
Subjt:  ------AKPGHKRIRPP

XP_021661935.1 protein ELF4-LIKE 3-like [Hevea brasiliensis]9.9e-3068.38Show/hide
Query:  MEGETFSISGGAVGNGRAIDGKMVQTFQKKLVEVENILDQNRLLINEINQNQESKMADNLGRNVGLIRELNNNIRRVVDLYADL----TKSME-------
        MEG+TFS     +GNG  IDGK++QTFQK  V+V+NILDQNRLLINEINQN ESK+ DNLGRNVGLIRELNNNIRRVVDLYADL    TKSME       
Subjt:  MEGETFSISGGAVGNGRAIDGKMVQTFQKKLVEVENILDQNRLLINEINQNQESKMADNLGRNVGLIRELNNNIRRVVDLYADL----TKSME-------

Query:  -----PDAKPGHKRIRP
              DAK GHKR RP
Subjt:  -----PDAKPGHKRIRP

XP_022154645.1 protein ELF4-LIKE 3-like isoform X2 [Momordica charantia]9.9e-4697.06Show/hide
Query:  MEGETFSISGGAVGNGRAIDGKMVQTFQKKLVEVENILDQNRLLINEINQNQESKMADNLGRNVGLIRELNNNIRRVVDLYADLTKSMEPDAKPGHKRIR
        MEGETFSISGGAVGNGRAIDGKMVQTFQKKLVEVE ILDQNRLLINEINQNQESKMADNLGRNVGLIRELNNNIRRVVDLYADLTKSMEPDAKPG+KR R
Subjt:  MEGETFSISGGAVGNGRAIDGKMVQTFQKKLVEVENILDQNRLLINEINQNQESKMADNLGRNVGLIRELNNNIRRVVDLYADLTKSMEPDAKPGHKRIR

Query:  PP
        PP
Subjt:  PP

XP_022946747.1 protein ELF4-LIKE 3-like [Cucurbita moschata]1.4e-3173.21Show/hide
Query:  MEGETFSISGGAVGNGRAIDGKMVQTFQKKLVEVENILDQNRLLINEINQNQESKMADNLGRNVGLIRELNNNIRRVVDLYADL----TKSMEPD-----
        MEGET  +S G +GNGR +DGKM QTFQK  V+V+NILDQNRLLINEINQN ESKM DNL RNVGLIRELNNNIRRVVDLYA L    TKSME       
Subjt:  MEGETFSISGGAVGNGRAIDGKMVQTFQKKLVEVENILDQNRLLINEINQNQESKMADNLGRNVGLIRELNNNIRRVVDLYADL----TKSMEPD-----

Query:  -AKPGHKRIRPP
         AKPGHKR RPP
Subjt:  -AKPGHKRIRPP

XP_023521403.1 protein ELF4-LIKE 3-like isoform X3 [Cucurbita pepo subsp. pepo]5.3e-3172.32Show/hide
Query:  MEGETFSISGGAVGNGRAIDGKMVQTFQKKLVEVENILDQNRLLINEINQNQESKMADNLGRNVGLIRELNNNIRRVVDLYADL----TKSMEPD-----
        MEGET  +S G +GNGR +DGKM  TFQK  V+V+NILDQNRLLINEINQN ESKM DNL RNVGLIRELNNNIRRVVDLYA L    TKSME       
Subjt:  MEGETFSISGGAVGNGRAIDGKMVQTFQKKLVEVENILDQNRLLINEINQNQESKMADNLGRNVGLIRELNNNIRRVVDLYADL----TKSMEPD-----

Query:  -AKPGHKRIRPP
         AKPGHKR RPP
Subjt:  -AKPGHKRIRPP

TrEMBL top hitse value%identityAlignment
A0A2C9W4E0 Elf4 domain-containing protein2.4e-2967.52Show/hide
Query:  MEGETFSISGGAVGNGRAIDGKMVQTFQKKLVEVENILDQNRLLINEINQNQESKMADNLGRNVGLIRELNNNIRRVVDLYADL----TKSME-------
        MEG+TFS     +GNG  IDGK++QTFQK  V+V+NILDQNRLLINEINQN ESK+ DNL RNVGLIRELNNNIRRVVDLYADL    TKSME       
Subjt:  MEGETFSISGGAVGNGRAIDGKMVQTFQKKLVEVENILDQNRLLINEINQNQESKMADNLGRNVGLIRELNNNIRRVVDLYADL----TKSME-------

Query:  -----PDAKPGHKRIRP
              DAK GHKR RP
Subjt:  -----PDAKPGHKRIRP

A0A6J1DK73 protein ELF4-LIKE 3-like isoform X24.8e-4697.06Show/hide
Query:  MEGETFSISGGAVGNGRAIDGKMVQTFQKKLVEVENILDQNRLLINEINQNQESKMADNLGRNVGLIRELNNNIRRVVDLYADLTKSMEPDAKPGHKRIR
        MEGETFSISGGAVGNGRAIDGKMVQTFQKKLVEVE ILDQNRLLINEINQNQESKMADNLGRNVGLIRELNNNIRRVVDLYADLTKSMEPDAKPG+KR R
Subjt:  MEGETFSISGGAVGNGRAIDGKMVQTFQKKLVEVENILDQNRLLINEINQNQESKMADNLGRNVGLIRELNNNIRRVVDLYADLTKSMEPDAKPGHKRIR

Query:  PP
        PP
Subjt:  PP

A0A6J1G4K6 protein ELF4-LIKE 3-like6.7e-3273.21Show/hide
Query:  MEGETFSISGGAVGNGRAIDGKMVQTFQKKLVEVENILDQNRLLINEINQNQESKMADNLGRNVGLIRELNNNIRRVVDLYADL----TKSMEPD-----
        MEGET  +S G +GNGR +DGKM QTFQK  V+V+NILDQNRLLINEINQN ESKM DNL RNVGLIRELNNNIRRVVDLYA L    TKSME       
Subjt:  MEGETFSISGGAVGNGRAIDGKMVQTFQKKLVEVENILDQNRLLINEINQNQESKMADNLGRNVGLIRELNNNIRRVVDLYADL----TKSMEPD-----

Query:  -AKPGHKRIRPP
         AKPGHKR RPP
Subjt:  -AKPGHKRIRPP

A0A6J1KJ14 protein ELF4-LIKE 3-like6.7e-3273.21Show/hide
Query:  MEGETFSISGGAVGNGRAIDGKMVQTFQKKLVEVENILDQNRLLINEINQNQESKMADNLGRNVGLIRELNNNIRRVVDLYADL----TKSMEPD-----
        MEGET  +S G +GNGR +DGKM QTFQK  V+V+NILDQNRLLINEINQN ESKM DNL RNVGLIRELNNNIRRVVDLYA L    TKSME       
Subjt:  MEGETFSISGGAVGNGRAIDGKMVQTFQKKLVEVENILDQNRLLINEINQNQESKMADNLGRNVGLIRELNNNIRRVVDLYADL----TKSMEPD-----

Query:  -AKPGHKRIRPP
         AKPGHKR RPP
Subjt:  -AKPGHKRIRPP

A0A6J5Y214 Elf4 domain-containing protein3.1e-2966.67Show/hide
Query:  MEGETFSISGGAVGNGRAIDGKMVQTFQKKLVEVENILDQNRLLINEINQNQESKMADNLGRNVGLIRELNNNIRRVVDLYADL----TKSME-------
        MEG+TFS     +GNG  IDGK++QTFQK  V+V+NILDQNRLLINEIN N ESK+ DNL RNVGLIRELNNNIRRVVDLYADL    TKSM+       
Subjt:  MEGETFSISGGAVGNGRAIDGKMVQTFQKKLVEVENILDQNRLLINEINQNQESKMADNLGRNVGLIRELNNNIRRVVDLYADL----TKSME-------

Query:  -----PDAKPGHKRIRP
              DAK GHKRIRP
Subjt:  -----PDAKPGHKRIRP

SwissProt top hitse value%identityAlignment
O04211 Protein EARLY FLOWERING 42.8e-1142.5Show/hide
Query:  DGKMVQTFQKKLVEVENILDQNRLLINEINQNQESKMADNLGRNVGLIRELNNNIRRVVDLYADLTKSMEP---DAKPGH
        D  M +   +   +V+++LD+NR LI ++N N +S+MADN+ +NV LI+ELN NI +VV++Y+DL  S        K GH
Subjt:  DGKMVQTFQKKLVEVENILDQNRLLINEINQNQESKMADNLGRNVGLIRELNNNIRRVVDLYADLTKSMEP---DAKPGH

O80877 Protein ELF4-LIKE 16.5e-0842.42Show/hide
Query:  DGKMVQTFQKKLVEVENILDQNRLLINEINQNQESKMADNLGRNVGLIRELNNNIRRVVDLYADLT
        D ++  T        +  LDQNR LI  +N+N  S++ DN+ RNVGLI E+N NI +V+++Y+DL+
Subjt:  DGKMVQTFQKKLVEVENILDQNRLLINEINQNQESKMADNLGRNVGLIRELNNNIRRVVDLYADLT

Q570U6 Protein ELF4-LIKE 45.5e-2364.37Show/hide
Query:  MEGETFSISGGAVGNGRAIDGKMVQTFQKKLVEVENILDQNRLLINEINQNQESKMADNLGRNVGLIRELNNNIRRVVDLYADLTKS
        MEG+  S      G+   +DGK++Q+FQK  V+V++ILDQNRLLINEINQN ESK  DNLGRNVGLI+ELNNNIRRV  LY DL+ S
Subjt:  MEGETFSISGGAVGNGRAIDGKMVQTFQKKLVEVENILDQNRLLINEINQNQESKMADNLGRNVGLIRELNNNIRRVVDLYADLTKS

Q8S8F5 Protein ELF4-LIKE 36.9e-2659.46Show/hide
Query:  MEGETFSISGGAVGNGRAIDGKMVQTFQKKLVEVENILDQNRLLINEINQNQESKMADNLGRNVGLIRELNNNIRRVVDLYADL----TKSMEPDAK---
        MEG+T S     +G+G  +DGK++QTF+K  V+V+NILD NRLLINEINQN ESK+ DNLGRNVGLIRELNNN+RRV  LY DL    +KSME  ++   
Subjt:  MEGETFSISGGAVGNGRAIDGKMVQTFQKKLVEVENILDQNRLLINEINQNQESKMADNLGRNVGLIRELNNNIRRVVDLYADL----TKSMEPDAK---

Query:  ---PGHKRIRP
            G++RIRP
Subjt:  ---PGHKRIRP

Q94BS8 Protein ELF4-LIKE 21.2e-2264.37Show/hide
Query:  MEGETFSISGGAVGNGRAIDGKMVQTFQKKLVEVENILDQNRLLINEINQNQESKMADNLGRNVGLIRELNNNIRRVVDLYADLTKS
        MEG+ +S      G    +DGK++Q FQK  V+V++ILDQNRLLINEINQN ESK AD+LGRNVGLIRELNNNIR V  LY DL+ S
Subjt:  MEGETFSISGGAVGNGRAIDGKMVQTFQKKLVEVENILDQNRLLINEINQNQESKMADNLGRNVGLIRELNNNIRRVVDLYADLTKS

Arabidopsis top hitse value%identityAlignment
AT1G17455.1 ELF4-like 43.9e-2464.37Show/hide
Query:  MEGETFSISGGAVGNGRAIDGKMVQTFQKKLVEVENILDQNRLLINEINQNQESKMADNLGRNVGLIRELNNNIRRVVDLYADLTKS
        MEG+  S      G+   +DGK++Q+FQK  V+V++ILDQNRLLINEINQN ESK  DNLGRNVGLI+ELNNNIRRV  LY DL+ S
Subjt:  MEGETFSISGGAVGNGRAIDGKMVQTFQKKLVEVENILDQNRLLINEINQNQESKMADNLGRNVGLIRELNNNIRRVVDLYADLTKS

AT1G17455.2 ELF4-like 43.9e-2464.37Show/hide
Query:  MEGETFSISGGAVGNGRAIDGKMVQTFQKKLVEVENILDQNRLLINEINQNQESKMADNLGRNVGLIRELNNNIRRVVDLYADLTKS
        MEG+  S      G+   +DGK++Q+FQK  V+V++ILDQNRLLINEINQN ESK  DNLGRNVGLI+ELNNNIRRV  LY DL+ S
Subjt:  MEGETFSISGGAVGNGRAIDGKMVQTFQKKLVEVENILDQNRLLINEINQNQESKMADNLGRNVGLIRELNNNIRRVVDLYADLTKS

AT1G72630.1 ELF4-like 28.7e-2464.37Show/hide
Query:  MEGETFSISGGAVGNGRAIDGKMVQTFQKKLVEVENILDQNRLLINEINQNQESKMADNLGRNVGLIRELNNNIRRVVDLYADLTKS
        MEG+ +S      G    +DGK++Q FQK  V+V++ILDQNRLLINEINQN ESK AD+LGRNVGLIRELNNNIR V  LY DL+ S
Subjt:  MEGETFSISGGAVGNGRAIDGKMVQTFQKKLVEVENILDQNRLLINEINQNQESKMADNLGRNVGLIRELNNNIRRVVDLYADLTKS

AT2G06255.1 ELF4-like 34.9e-2759.46Show/hide
Query:  MEGETFSISGGAVGNGRAIDGKMVQTFQKKLVEVENILDQNRLLINEINQNQESKMADNLGRNVGLIRELNNNIRRVVDLYADL----TKSMEPDAK---
        MEG+T S     +G+G  +DGK++QTF+K  V+V+NILD NRLLINEINQN ESK+ DNLGRNVGLIRELNNN+RRV  LY DL    +KSME  ++   
Subjt:  MEGETFSISGGAVGNGRAIDGKMVQTFQKKLVEVENILDQNRLLINEINQNQESKMADNLGRNVGLIRELNNNIRRVVDLYADL----TKSMEPDAK---

Query:  ---PGHKRIRP
            G++RIRP
Subjt:  ---PGHKRIRP

AT2G40080.1 Protein of unknown function (DUF1313)2.0e-1242.5Show/hide
Query:  DGKMVQTFQKKLVEVENILDQNRLLINEINQNQESKMADNLGRNVGLIRELNNNIRRVVDLYADLTKSMEP---DAKPGH
        D  M +   +   +V+++LD+NR LI ++N N +S+MADN+ +NV LI+ELN NI +VV++Y+DL  S        K GH
Subjt:  DGKMVQTFQKKLVEVENILDQNRLLINEINQNQESKMADNLGRNVGLIRELNNNIRRVVDLYADLTKSMEP---DAKPGH


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGGGGGAGACATTCTCAATCTCAGGAGGAGCGGTGGGCAATGGAAGGGCGATTGATGGGAAAATGGTGCAGACTTTTCAGAAGAAGTTGGTTGAAGTTGAGAACAT
TTTGGACCAAAACAGATTGCTGATCAACGAAATTAACCAAAACCAGGAGTCGAAGATGGCCGACAACCTGGGCAGAAACGTGGGTCTCATCCGCGAGCTCAACAACAACA
TCAGAAGGGTTGTGGATTTGTACGCCGACCTCACCAAATCCATGGAACCCGACGCCAAGCCTGGCCACAAGCGGATCCGACCTCCT
mRNA sequenceShow/hide mRNA sequence
ATGGAGGGGGAGACATTCTCAATCTCAGGAGGAGCGGTGGGCAATGGAAGGGCGATTGATGGGAAAATGGTGCAGACTTTTCAGAAGAAGTTGGTTGAAGTTGAGAACAT
TTTGGACCAAAACAGATTGCTGATCAACGAAATTAACCAAAACCAGGAGTCGAAGATGGCCGACAACCTGGGCAGAAACGTGGGTCTCATCCGCGAGCTCAACAACAACA
TCAGAAGGGTTGTGGATTTGTACGCCGACCTCACCAAATCCATGGAACCCGACGCCAAGCCTGGCCACAAGCGGATCCGACCTCCT
Protein sequenceShow/hide protein sequence
MEGETFSISGGAVGNGRAIDGKMVQTFQKKLVEVENILDQNRLLINEINQNQESKMADNLGRNVGLIRELNNNIRRVVDLYADLTKSMEPDAKPGHKRIRPP