CuGenDBv2

Gene ID	MS023680
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Photosystem II subunit X
Genome location	scaffold570:211434..211832
RNA-Seq Expression	MS023680
Synteny	MS023680
Gene Ontology terms	GO:0015979 - photosynthesis (biological process) GO:0009523 - photosystem II (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0019904 - protein domain specific binding (molecular function)
InterPro domains	IPR009518 - Photosystem II PsbX

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG7030501.1 hypothetical protein SDJN02_08848, partial [Cucurbita argyrosperma subsp. argyrosperma]

4.7e-32

69.85

Show/hide

Query:  MASTSAVSVAMPITKAS---ARSSQGFGRARALPLRPSSSSNPTPTPTPTPTAAPASNSAAKFQVRASLKDKAVAGLAATALTASLLIPEVAEAAGPGVT
        MASTSAVS+AMPIT A+   AR++  F  A+ALPLRPS+           PTA  +SNS AKFQVRASLK+KAVAGL ATALTAS+++PEVAEAAGPGV+
Subjt:  MASTSAVSVAMPITKAS---ARSSQGFGRARALPLRPSSSSNPTPTPTPTPTAAPASNSAAKFQVRASLKDKAVAGLAATALTASLLIPEVAEAAGPGVT

Query:  PSLQNFLLSIAAGGVVVTAIIGAVFGVANFDPVKRT
        PSL+NFLLSIAAGGVVV AI+GA+ GV+NFDPVKRT
Subjt:  PSLQNFLLSIAAGGVVVTAIIGAVFGVANFDPVKRT

XP_022154703.1 uncharacterized protein LOC111021896 [Momordica charantia]

4.9e-53

96.99

Show/hide

Query:  MASTSAVSVAMPITKASARSSQGFGRARALPLRPSSSSNPTPTPTPTPTAAPASNSAAKFQVRASLKDKAVAGLAATALTASLLIPEVAEAAGPGVTPSL
        MASTSAVSVAMPITKASARSSQ FGRARALPLRPSSSSN  PTPTPTPTAAPASNSAAKFQVRASLKDKAVAGLA TALTASLLIPEVAEAAGPGVTPSL
Subjt:  MASTSAVSVAMPITKASARSSQGFGRARALPLRPSSSSNPTPTPTPTPTAAPASNSAAKFQVRASLKDKAVAGLAATALTASLLIPEVAEAAGPGVTPSL

Query:  QNFLLSIAAGGVVVTAIIGAVFGVANFDPVKRT
        QNFLLSIAAGGVVVTAIIGAVFGVANFDPVKRT
Subjt:  QNFLLSIAAGGVVVTAIIGAVFGVANFDPVKRT

XP_022946746.1 uncharacterized protein LOC111450721 [Cucurbita moschata]

1.9e-33

72.06

Show/hide

Query:  MASTSAVSVAMPITKAS---ARSSQGFGRARALPLRPSSSSNPTPTPTPTPTAAPASNSAAKFQVRASLKDKAVAGLAATALTASLLIPEVAEAAGPGVT
        MASTSAVS+AMPIT A+   ARS+  F  A+ALPLRPS+           PTA  +SNS AKFQVRASLK+KAVAGLAATALTAS+++PEVAEAAGPGV+
Subjt:  MASTSAVSVAMPITKAS---ARSSQGFGRARALPLRPSSSSNPTPTPTPTPTAAPASNSAAKFQVRASLKDKAVAGLAATALTASLLIPEVAEAAGPGVT

Query:  PSLQNFLLSIAAGGVVVTAIIGAVFGVANFDPVKRT
        PSL+NFLLSIAAGGVVVTAI+GA+ GV+NFDPVKRT
Subjt:  PSLQNFLLSIAAGGVVVTAIIGAVFGVANFDPVKRT

XP_022999231.1 uncharacterized protein LOC111493667 [Cucurbita maxima]

7.3e-33

71.32

Show/hide

Query:  MASTSAVSVAMPITKAS---ARSSQGFGRARALPLRPSSSSNPTPTPTPTPTAAPASNSAAKFQVRASLKDKAVAGLAATALTASLLIPEVAEAAGPGVT
        MASTSAVS+AMPIT A+   ARS+  F  A+ALPLRPS+           PTA  +SNS AKFQVRASLK+KAVAGLAATALTAS+++PEVAEAAGPGV+
Subjt:  MASTSAVSVAMPITKAS---ARSSQGFGRARALPLRPSSSSNPTPTPTPTPTAAPASNSAAKFQVRASLKDKAVAGLAATALTASLLIPEVAEAAGPGVT

Query:  PSLQNFLLSIAAGGVVVTAIIGAVFGVANFDPVKRT
        PSL+NFLLSIAAGGVVV AI+GA+ GV+NFDPVKRT
Subjt:  PSLQNFLLSIAAGGVVVTAIIGAVFGVANFDPVKRT

XP_038890010.1 uncharacterized protein LOC120079733 [Benincasa hispida]

7.3e-33

69.85

Show/hide

Query:  MASTSAVSVAMPITKAS---ARSSQGFGRARALPLRPSSSSNPTPTPTPTPTAAPASNSAAKFQVRASLKDKAVAGLAATALTASLLIPEVAEAAGPGVT
        MASTSA+S+AMPIT A+   AR ++ F  A+ LPLRPS+  N             +SNS+AKFQVRASLK+KAVAGLAATALTAS+++PEVAEAAGPGV+
Subjt:  MASTSAVSVAMPITKAS---ARSSQGFGRARALPLRPSSSSNPTPTPTPTPTAAPASNSAAKFQVRASLKDKAVAGLAATALTASLLIPEVAEAAGPGVT

Query:  PSLQNFLLSIAAGGVVVTAIIGAVFGVANFDPVKRT
        PSL+NFLLSIAAGGVVVTAI+GAV GVANFDPVKRT
Subjt:  PSLQNFLLSIAAGGVVVTAIIGAVFGVANFDPVKRT

TrEMBL top hits

e value

%identity

Alignment

A0A5A7V6L0 Membrane family protein

5.1e-32

68.38

Show/hide

Query:  MASTSAVSVAMPITKAS---ARSSQGFGRARALPLRPSSSSNPTPTPTPTPTAAPASNSAAKFQVRASLKDKAVAGLAATALTASLLIPEVAEAAGPGVT
        MASTSA+S+AMPIT A+   AR ++ F  A+ LPLRPS+              + +S+S+AKFQVRASLK+KAVAGLAATALTAS+++PEVAEAAGPGV+
Subjt:  MASTSAVSVAMPITKAS---ARSSQGFGRARALPLRPSSSSNPTPTPTPTPTAAPASNSAAKFQVRASLKDKAVAGLAATALTASLLIPEVAEAAGPGVT

Query:  PSLQNFLLSIAAGGVVVTAIIGAVFGVANFDPVKRT
        PSL+NFLLSIAAGGVVVTAI+GAV GVANFDPVKRT
Subjt:  PSLQNFLLSIAAGGVVVTAIIGAVFGVANFDPVKRT

A0A6J1DL14 uncharacterized protein LOC111021896

2.4e-53

96.99

Show/hide

Query:  MASTSAVSVAMPITKASARSSQGFGRARALPLRPSSSSNPTPTPTPTPTAAPASNSAAKFQVRASLKDKAVAGLAATALTASLLIPEVAEAAGPGVTPSL
        MASTSAVSVAMPITKASARSSQ FGRARALPLRPSSSSN  PTPTPTPTAAPASNSAAKFQVRASLKDKAVAGLA TALTASLLIPEVAEAAGPGVTPSL
Subjt:  MASTSAVSVAMPITKASARSSQGFGRARALPLRPSSSSNPTPTPTPTPTAAPASNSAAKFQVRASLKDKAVAGLAATALTASLLIPEVAEAAGPGVTPSL

Query:  QNFLLSIAAGGVVVTAIIGAVFGVANFDPVKRT
        QNFLLSIAAGGVVVTAIIGAVFGVANFDPVKRT
Subjt:  QNFLLSIAAGGVVVTAIIGAVFGVANFDPVKRT

A0A6J1FHW0 uncharacterized protein LOC111444282

1.5e-31

68.38

Show/hide

Query:  MASTSAVSVAMPITKAS---ARSSQGFGRARALPLRPSSSSNPTPTPTPTPTAAPASNSAAKFQVRASLKDKAVAGLAATALTASLLIPEVAEAAGPGVT
        MASTSAVS+AMPIT A+    RS++ F  A+ALPLRPS+           P AA + +S+AKFQVRAS+K+KA+AGLAATALTAS+++PEVAEAAG GVT
Subjt:  MASTSAVSVAMPITKAS---ARSSQGFGRARALPLRPSSSSNPTPTPTPTPTAAPASNSAAKFQVRASLKDKAVAGLAATALTASLLIPEVAEAAGPGVT

Query:  PSLQNFLLSIAAGGVVVTAIIGAVFGVANFDPVKRT
        PSL+NFLLSIAAGGVVVTAI+GA+ GV+NFDPVKRT
Subjt:  PSLQNFLLSIAAGGVVVTAIIGAVFGVANFDPVKRT

A0A6J1G4H3 uncharacterized protein LOC111450721

9.3e-34

72.06

Show/hide

Query:  MASTSAVSVAMPITKAS---ARSSQGFGRARALPLRPSSSSNPTPTPTPTPTAAPASNSAAKFQVRASLKDKAVAGLAATALTASLLIPEVAEAAGPGVT
        MASTSAVS+AMPIT A+   ARS+  F  A+ALPLRPS+           PTA  +SNS AKFQVRASLK+KAVAGLAATALTAS+++PEVAEAAGPGV+
Subjt:  MASTSAVSVAMPITKAS---ARSSQGFGRARALPLRPSSSSNPTPTPTPTPTAAPASNSAAKFQVRASLKDKAVAGLAATALTASLLIPEVAEAAGPGVT

Query:  PSLQNFLLSIAAGGVVVTAIIGAVFGVANFDPVKRT
        PSL+NFLLSIAAGGVVVTAI+GA+ GV+NFDPVKRT
Subjt:  PSLQNFLLSIAAGGVVVTAIIGAVFGVANFDPVKRT

A0A6J1KCH8 uncharacterized protein LOC111493667

3.5e-33

71.32

Show/hide

Query:  MASTSAVSVAMPITKAS---ARSSQGFGRARALPLRPSSSSNPTPTPTPTPTAAPASNSAAKFQVRASLKDKAVAGLAATALTASLLIPEVAEAAGPGVT
        MASTSAVS+AMPIT A+   ARS+  F  A+ALPLRPS+           PTA  +SNS AKFQVRASLK+KAVAGLAATALTAS+++PEVAEAAGPGV+
Subjt:  MASTSAVSVAMPITKAS---ARSSQGFGRARALPLRPSSSSNPTPTPTPTPTAAPASNSAAKFQVRASLKDKAVAGLAATALTASLLIPEVAEAAGPGVT

Query:  PSLQNFLLSIAAGGVVVTAIIGAVFGVANFDPVKRT
        PSL+NFLLSIAAGGVVV AI+GA+ GV+NFDPVKRT
Subjt:  PSLQNFLLSIAAGGVVVTAIIGAVFGVANFDPVKRT

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G06520.1 photosystem II subunit X

3.6e-22

51.13

Show/hide

Query:  MASTSAVSVAMPITKASARSSQGFGRARALPLRPSSSSNPTPTPTPTPTAAPASNSAAKFQVRASLKDKAVAGLAATALTASLLIPEVAEAAGPGVTPSL
        MASTSA+S+  P+ +   RSS      + LPL+PS +   T               A + QV+A   DKA+ G++A ALTAS++IPE+AEAAG G++PSL
Subjt:  MASTSAVSVAMPITKASARSSQGFGRARALPLRPSSSSNPTPTPTPTPTAAPASNSAAKFQVRASLKDKAVAGLAATALTASLLIPEVAEAAGPGVTPSL

Query:  QNFLLSIAAGGVVVTAIIGAVFGVANFDPVKRT
        +NFLLSIA+GG+V+T IIG V GV+NFDPVKRT
Subjt:  QNFLLSIAAGGVVVTAIIGAVFGVANFDPVKRT

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGCTTCCACTTCCGCAGTCTCGGTGGCGATGCCGATTACTAAGGCGAGCGCGAGGAGCTCCCAAGGCTTTGGCAGGGCAAGGGCGTTGCCTCTGAGGCCTTCCAGTTC
CAGCAACCCAACTCCAACTCCAACTCCAACTCCAACTGCTGCGCCTGCATCGAACTCCGCCGCCAAGTTCCAAGTGCGGGCTTCCTTGAAGGACAAGGCAGTTGCTGGAC
TCGCTGCCACTGCGCTCACGGCCTCCCTGCTTATTCCTGAGGTGGCTGAAGCTGCTGGGCCTGGCGTCACTCCTTCTCTCCAGAACTTCTTGCTCAGCATTGCCGCCGGT
GGAGTAGTGGTCACTGCCATCATCGGTGCAGTTTTCGGCGTCGCCAATTTCGATCCCGTCAAGCGGACC

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MASTSAVSVAMPITKASARSSQGFGRARALPLRPSSSSNPTPTPTPTPTAAPASNSAAKFQVRASLKDKAVAGLAATALTASLLIPEVAEAAGPGVTPSLQNFLLSIAAG
GVVVTAIIGAVFGVANFDPVKRT

MS023680 (gene) of Bitter gourd (TR) v1 genome