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MS023688 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS023688
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRibosomal protein L18ae family
Genome locationscaffold570:247936..249246
RNA-Seq ExpressionMS023688
SyntenyMS023688
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004141063.1 uncharacterized protein LOC101207093 isoform X2 [Cucumis sativus]2.3e-5886.15Show/hide
Query:  DARTEETFQLVKSVSDKHLDLLRPSARFCSIFRGQGKDASDHVRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLVWYYATVLYFWNVRR
        + + ++T QLVKSVSDKHLDLLRPSAR CSIF+GQGKDA DH+RSKYTLLRDVED+QVGLYDKPLPCFGCGIGWFSFLLGFFFPL+WYYAT+LYFWN RR
Subjt:  DARTEETFQLVKSVSDKHLDLLRPSARFCSIFRGQGKDASDHVRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLVWYYATVLYFWNVRR

Query:  DPRERAGLAASAIAALACSVILLVVVAVLL
        DPRERAGLAASAIAALACS++LL+VVAVLL
Subjt:  DPRERAGLAASAIAALACSVILLVVVAVLL

XP_008459564.1 PREDICTED: uncharacterized protein LOC103498658 [Cucumis melo]6.0e-5987.69Show/hide
Query:  DARTEETFQLVKSVSDKHLDLLRPSARFCSIFRGQGKDASDHVRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLVWYYATVLYFWNVRR
        + + ++T QLVKSVSDKHLDLLRPSAR CSIF+GQGKDA DH+RSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPL+WYYAT+LYFWN RR
Subjt:  DARTEETFQLVKSVSDKHLDLLRPSARFCSIFRGQGKDASDHVRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLVWYYATVLYFWNVRR

Query:  DPRERAGLAASAIAALACSVILLVVVAVLL
        DPRERAGLAASAIAALACS+ILL+VVAVLL
Subjt:  DPRERAGLAASAIAALACSVILLVVVAVLL

XP_022154699.1 uncharacterized protein LOC111021894 isoform X1 [Momordica charantia]4.6e-5997.44Show/hide
Query:  DVTDARTEETFQLVKSVSDKHLDLLRPSARFCSIFRGQGKDASDHVRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLVWYYATVLYFWN
        D  DART ETFQLVKSVSDKHLDLLRPSARFCSIFRGQGKDASDHVRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLVWYYATVLYFWN
Subjt:  DVTDARTEETFQLVKSVSDKHLDLLRPSARFCSIFRGQGKDASDHVRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLVWYYATVLYFWN

Query:  VRRDPRERAGLAASAIA
        VRRDPRERAGLAASAIA
Subjt:  VRRDPRERAGLAASAIA

XP_022154701.1 uncharacterized protein LOC111021894 isoform X3 [Momordica charantia]5.6e-6597.74Show/hide
Query:  DVTDARTEETFQLVKSVSDKHLDLLRPSARFCSIFRGQGKDASDHVRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLVWYYATVLYFWN
        D  DART ETFQLVKSVSDKHLDLLRPSARFCSIFRGQGKDASDHVRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLVWYYATVLYFWN
Subjt:  DVTDARTEETFQLVKSVSDKHLDLLRPSARFCSIFRGQGKDASDHVRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLVWYYATVLYFWN

Query:  VRRDPRERAGLAASAIAALACSVILLVVVAVLL
        VRRDPRERAGLAASAIAALACSVILLVVVAVLL
Subjt:  VRRDPRERAGLAASAIAALACSVILLVVVAVLL

XP_038889607.1 uncharacterized protein LOC120079478 [Benincasa hispida]1.2e-5989.23Show/hide
Query:  DARTEETFQLVKSVSDKHLDLLRPSARFCSIFRGQGKDASDHVRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLVWYYATVLYFWNVRR
        + + ++T QLVKSVSDKHLDLLRPSAR CSIF+GQGKDASDH+RSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPL+WYYAT+LYFWN RR
Subjt:  DARTEETFQLVKSVSDKHLDLLRPSARFCSIFRGQGKDASDHVRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLVWYYATVLYFWNVRR

Query:  DPRERAGLAASAIAALACSVILLVVVAVLL
        DPRERAGLAASAIAALACS+ILLVVVAVLL
Subjt:  DPRERAGLAASAIAALACSVILLVVVAVLL

TrEMBL top hitse value%identityAlignment
A0A0A0LKM2 Uncharacterized protein1.1e-5886.15Show/hide
Query:  DARTEETFQLVKSVSDKHLDLLRPSARFCSIFRGQGKDASDHVRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLVWYYATVLYFWNVRR
        + + ++T QLVKSVSDKHLDLLRPSAR CSIF+GQGKDA DH+RSKYTLLRDVED+QVGLYDKPLPCFGCGIGWFSFLLGFFFPL+WYYAT+LYFWN RR
Subjt:  DARTEETFQLVKSVSDKHLDLLRPSARFCSIFRGQGKDASDHVRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLVWYYATVLYFWNVRR

Query:  DPRERAGLAASAIAALACSVILLVVVAVLL
        DPRERAGLAASAIAALACS++LL+VVAVLL
Subjt:  DPRERAGLAASAIAALACSVILLVVVAVLL

A0A1S3CAZ9 uncharacterized protein LOC1034986582.9e-5987.69Show/hide
Query:  DARTEETFQLVKSVSDKHLDLLRPSARFCSIFRGQGKDASDHVRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLVWYYATVLYFWNVRR
        + + ++T QLVKSVSDKHLDLLRPSAR CSIF+GQGKDA DH+RSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPL+WYYAT+LYFWN RR
Subjt:  DARTEETFQLVKSVSDKHLDLLRPSARFCSIFRGQGKDASDHVRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLVWYYATVLYFWNVRR

Query:  DPRERAGLAASAIAALACSVILLVVVAVLL
        DPRERAGLAASAIAALACS+ILL+VVAVLL
Subjt:  DPRERAGLAASAIAALACSVILLVVVAVLL

A0A5D3CGZ6 60S ribosomal protein L18a-12.9e-5987.69Show/hide
Query:  DARTEETFQLVKSVSDKHLDLLRPSARFCSIFRGQGKDASDHVRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLVWYYATVLYFWNVRR
        + + ++T QLVKSVSDKHLDLLRPSAR CSIF+GQGKDA DH+RSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPL+WYYAT+LYFWN RR
Subjt:  DARTEETFQLVKSVSDKHLDLLRPSARFCSIFRGQGKDASDHVRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLVWYYATVLYFWNVRR

Query:  DPRERAGLAASAIAALACSVILLVVVAVLL
        DPRERAGLAASAIAALACS+ILL+VVAVLL
Subjt:  DPRERAGLAASAIAALACSVILLVVVAVLL

A0A6J1DMX6 uncharacterized protein LOC111021894 isoform X12.2e-5997.44Show/hide
Query:  DVTDARTEETFQLVKSVSDKHLDLLRPSARFCSIFRGQGKDASDHVRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLVWYYATVLYFWN
        D  DART ETFQLVKSVSDKHLDLLRPSARFCSIFRGQGKDASDHVRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLVWYYATVLYFWN
Subjt:  DVTDARTEETFQLVKSVSDKHLDLLRPSARFCSIFRGQGKDASDHVRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLVWYYATVLYFWN

Query:  VRRDPRERAGLAASAIA
        VRRDPRERAGLAASAIA
Subjt:  VRRDPRERAGLAASAIA

A0A6J1DPH7 uncharacterized protein LOC111021894 isoform X32.7e-6597.74Show/hide
Query:  DVTDARTEETFQLVKSVSDKHLDLLRPSARFCSIFRGQGKDASDHVRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLVWYYATVLYFWN
        D  DART ETFQLVKSVSDKHLDLLRPSARFCSIFRGQGKDASDHVRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLVWYYATVLYFWN
Subjt:  DVTDARTEETFQLVKSVSDKHLDLLRPSARFCSIFRGQGKDASDHVRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLVWYYATVLYFWN

Query:  VRRDPRERAGLAASAIAALACSVILLVVVAVLL
        VRRDPRERAGLAASAIAALACSVILLVVVAVLL
Subjt:  VRRDPRERAGLAASAIAALACSVILLVVVAVLL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G54217.1 Ribosomal protein L18ae family1.3e-2264.04Show/hide
Query:  RSKYTLLR-DVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLVWYYATVLYFWN-VRRDPRERAGLAASAIAALACSVILLVVVAVLL
        + KY L+R D EDS++G + KPLPCFG GIGWFSFLLGF FP  WY AT LY  +   RDPRER+GLAASAIAAL  SV L++ V VL+
Subjt:  RSKYTLLR-DVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLVWYYATVLYFWN-VRRDPRERAGLAASAIAALACSVILLVVVAVLL

AT1G54217.2 Ribosomal protein L18ae family3.3e-2361.05Show/hide
Query:  DASDHVRSKYTLLR-DVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLVWYYATVLYFWN-VRRDPRERAGLAASAIAALACSVILLVVVAVLL
        D  +  + KY L+R D EDS++G + KPLPCFG GIGWFSFLLGF FP  WY AT LY  +   RDPRER+GLAASAIAAL  SV L++ V VL+
Subjt:  DASDHVRSKYTLLR-DVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLVWYYATVLYFWN-VRRDPRERAGLAASAIAALACSVILLVVVAVLL

AT4G26060.1 Ribosomal protein L18ae family1.3e-3560Show/hide
Query:  RTEETFQLVKSVSDKHLDLLRPSARFCSIFRGQGKDASDHVRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLVWYYATVLYFWN-VRRD
        R + + +LVKSV+DKH  L+RP A++ S      KDA    + +YTL++DV++ + G+YDKPLPCFGCGIGWFSFLLGF FP +WYYAT+LYF N  R+D
Subjt:  RTEETFQLVKSVSDKHLDLLRPSARFCSIFRGQGKDASDHVRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLVWYYATVLYFWN-VRRD

Query:  PRERAGLAASAIAALACSVILLVVV
        PRERAGLAASAI A+  S++LLV+V
Subjt:  PRERAGLAASAIAALACSVILLVVV

AT5G57060.1 FUNCTIONS IN: molecular_function unknown2.1e-3357.5Show/hide
Query:  QLVKSVSDKHLDLLRPSARFCSIFRGQGKDASDHVRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLVWYYATVLYFWN-VRRDPRERAG
        +LVK ++D+H  L++ ++R  S      KDA    + +YTL++DV+D + G YDKPLPCFGCGIGWFSFLLGF FP +WYYA  LYF N  R+DPRERAG
Subjt:  QLVKSVSDKHLDLLRPSARFCSIFRGQGKDASDHVRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLVWYYATVLYFWN-VRRDPRERAG

Query:  LAASAIAALACSVILLVVVA
        LAASAI A+  S++LLV+ A
Subjt:  LAASAIAALACSVILLVVVA

AT5G57060.2 BEST Arabidopsis thaliana protein match is: Ribosomal protein L18ae family (TAIR:AT4G26060.1)1.1e-2966.3Show/hide
Query:  KDASDHVRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLVWYYATVLYFWN-VRRDPRERAGLAASAIAALACSVILLVVVA
        KDA    + +YTL++DV+D + G YDKPLPCFGCGIGWFSFLLGF FP +WYYA  LYF N  R+DPRERAGLAASAI A+  S++LLV+ A
Subjt:  KDASDHVRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLVWYYATVLYFWN-VRRDPRERAGLAASAIAALACSVILLVVVA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CTTGATGTTACAGATGCAAGAACCGAGGAGACTTTCCAACTGGTGAAATCGGTCTCCGACAAGCATCTTGATCTTTTGAGGCCATCTGCCCGATTTTGTTCAATATTCAG
AGGCCAAGGAAAAGACGCTTCAGATCATGTAAGAAGCAAGTATACCCTTCTCAGAGATGTAGAGGATTCTCAAGTAGGGCTATATGACAAACCTCTCCCATGTTTTGGCT
GTGGCATTGGATGGTTTTCTTTCCTCCTCGGGTTCTTTTTCCCACTTGTGTGGTACTATGCCACGGTTCTCTACTTTTGGAACGTCCGTAGAGATCCAAGGGAACGAGCT
GGACTAGCTGCATCTGCTATTGCTGCTCTTGCATGTTCGGTCATCTTGTTAGTCGTTGTAGCTGTTCTACTG
mRNA sequenceShow/hide mRNA sequence
CTTGATGTTACAGATGCAAGAACCGAGGAGACTTTCCAACTGGTGAAATCGGTCTCCGACAAGCATCTTGATCTTTTGAGGCCATCTGCCCGATTTTGTTCAATATTCAG
AGGCCAAGGAAAAGACGCTTCAGATCATGTAAGAAGCAAGTATACCCTTCTCAGAGATGTAGAGGATTCTCAAGTAGGGCTATATGACAAACCTCTCCCATGTTTTGGCT
GTGGCATTGGATGGTTTTCTTTCCTCCTCGGGTTCTTTTTCCCACTTGTGTGGTACTATGCCACGGTTCTCTACTTTTGGAACGTCCGTAGAGATCCAAGGGAACGAGCT
GGACTAGCTGCATCTGCTATTGCTGCTCTTGCATGTTCGGTCATCTTGTTAGTCGTTGTAGCTGTTCTACTG
Protein sequenceShow/hide protein sequence
LDVTDARTEETFQLVKSVSDKHLDLLRPSARFCSIFRGQGKDASDHVRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLVWYYATVLYFWNVRRDPRERA
GLAASAIAALACSVILLVVVAVLL