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MS023734 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS023734
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionE3 ubiquitin-protein ligase
Genome locationscaffold570:621808..621957
RNA-Seq ExpressionMS023734
SyntenyMS023734
Gene Ontology termsGO:0006511 - ubiquitin-dependent protein catabolic process (biological process)
GO:0016567 - protein ubiquitination (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0008270 - zinc ion binding (molecular function)
GO:0061630 - ubiquitin protein ligase activity (molecular function)
InterPro domainsIPR001841 - Zinc finger, RING-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0061529.1 RING-H2 finger protein ATL5-like [Cucumis melo var. makuwa]1.1e-1884Show/hide
Query:  CAVCMEDFRPDESGKQIRCGHVYHEICISSWLSVGDCCPLCRRHISSGDK
        CAVCMEDF PDE GKQI CGHVYH+ CISSWLSVGD CPLCRRHI+ GDK
Subjt:  CAVCMEDFRPDESGKQIRCGHVYHEICISSWLSVGDCCPLCRRHISSGDK
XP_011650093.1 E3 ubiquitin-protein ligase RNF115 [Cucumis sativus]1.8e-1676Show/hide
Query:  CAVCMEDFRPDESGKQIRCGHVYHEICISSWLSVGDCCPLCRRHISSGDK
        CAVCMEDF PDE GKQI CGHVYH+ C+SSWLS+ D CPLCR HI+ GDK
Subjt:  CAVCMEDFRPDESGKQIRCGHVYHEICISSWLSVGDCCPLCRRHISSGDK
XP_022965415.1 E3 ubiquitin-protein ligase RNF181-like [Cucurbita maxima]9.5e-1880Show/hide
Query:  CAVCMEDFRPDESGKQIRCGHVYHEICISSWLSVGDCCPLCRRHISSGDK
        CAVCME+FR DE GKQI CGHVYH+ CISSWLSVGDCCPLCR H+SS +K
Subjt:  CAVCMEDFRPDESGKQIRCGHVYHEICISSWLSVGDCCPLCRRHISSGDK
XP_023537996.1 E3 ubiquitin-protein ligase RING1-like [Cucurbita pepo subsp. pepo]7.3e-1880Show/hide
Query:  CAVCMEDFRPDESGKQIRCGHVYHEICISSWLSVGDCCPLCRRHISSGDK
        CAVCME+FR DE GKQI CGHVYH+ CISSWLSVGDCCPLCR H+SS +K
Subjt:  CAVCMEDFRPDESGKQIRCGHVYHEICISSWLSVGDCCPLCRRHISSGDK
XP_038877426.1 E3 ubiquitin-protein ligase RNF126-like [Benincasa hispida]2.8e-1778Show/hide
Query:  CAVCMEDFRPDESGKQIRCGHVYHEICISSWLSVGDCCPLCRRHISSGDK
        CAVC+EDF PDESGKQI CGHVYH+ C+SSWLSVGD CPLCRRHI+S ++
Subjt:  CAVCMEDFRPDESGKQIRCGHVYHEICISSWLSVGDCCPLCRRHISSGDK
TrEMBL top hitse value%identityAlignment
A0A0A0LEZ1 RING-type domain-containing protein8.7e-1776Show/hide
Query:  CAVCMEDFRPDESGKQIRCGHVYHEICISSWLSVGDCCPLCRRHISSGDK
        CAVCMEDF PDE GKQI CGHVYH+ C+SSWLS+ D CPLCR HI+ GDK
Subjt:  CAVCMEDFRPDESGKQIRCGHVYHEICISSWLSVGDCCPLCRRHISSGDK
A0A5A7V2P4 RING-H2 finger protein ATL5-like1.6e-1583.33Show/hide
Query:  CAVCMEDFRPDESGKQIRCGHVYHEICISSWLSVGDCCPLCR
        CAVC++DFRPDE+GKQI CGHVYHE CISSWL+V DCCPLCR
Subjt:  CAVCMEDFRPDESGKQIRCGHVYHEICISSWLSVGDCCPLCR
A0A5A7V793 RING-H2 finger protein ATL5-like5.4e-1984Show/hide
Query:  CAVCMEDFRPDESGKQIRCGHVYHEICISSWLSVGDCCPLCRRHISSGDK
        CAVCMEDF PDE GKQI CGHVYH+ CISSWLSVGD CPLCRRHI+ GDK
Subjt:  CAVCMEDFRPDESGKQIRCGHVYHEICISSWLSVGDCCPLCRRHISSGDK
A0A6J1FDN7 E3 ubiquitin-protein ligase RING1-like8.7e-1778.43Show/hide
Query:  CAVCMEDFRPDESGKQIRCGHVYHEICISSWLSV-GDCCPLCRRHISSGDK
        CAVCME+FR DE GKQI CGHVYH+ CISSWLSV GDCCPLCR H+SS +K
Subjt:  CAVCMEDFRPDESGKQIRCGHVYHEICISSWLSV-GDCCPLCRRHISSGDK
A0A6J1HNM2 E3 ubiquitin-protein ligase RNF181-like4.6e-1880Show/hide
Query:  CAVCMEDFRPDESGKQIRCGHVYHEICISSWLSVGDCCPLCRRHISSGDK
        CAVCME+FR DE GKQI CGHVYH+ CISSWLSVGDCCPLCR H+SS +K
Subjt:  CAVCMEDFRPDESGKQIRCGHVYHEICISSWLSVGDCCPLCRRHISSGDK
SwissProt top hitse value%identityAlignment
O22283 Probable E3 ubiquitin-protein ligase RHC2A3.2e-0840.82Show/hide
Query:  CAVCMEDFRPDESGKQIRCGHVYHEICISSWLSVGDCCPLCRRHISSGD
        CAVC E+F    S +++ C H+YH  CI  WL++ + CP+CR  + + D
Subjt:  CAVCMEDFRPDESGKQIRCGHVYHEICISSWLSVGDCCPLCRRHISSGD
Q6DIP3 E3 ubiquitin-protein ligase RNF1263.2e-0845.65Show/hide
Query:  CAVCMEDFRPDESGKQIRCGHVYHEICISSWLSVGDCCPLCRRHIS
        C VC ED+   ES +Q+ C H++H  CI  WL   D CP+CR+ +S
Subjt:  CAVCMEDFRPDESGKQIRCGHVYHEICISSWLSVGDCCPLCRRHIS
Q6IRP0 E3 ubiquitin-protein ligase RNF126-B3.2e-0845.65Show/hide
Query:  CAVCMEDFRPDESGKQIRCGHVYHEICISSWLSVGDCCPLCRRHIS
        C VC ED+   ES +Q+ C H++H  CI  WL   D CP+CR+ +S
Subjt:  CAVCMEDFRPDESGKQIRCGHVYHEICISSWLSVGDCCPLCRRHIS
Q91YL2 E3 ubiquitin-protein ligase RNF1264.2e-0843.48Show/hide
Query:  CAVCMEDFRPDESGKQIRCGHVYHEICISSWLSVGDCCPLCRRHIS
        C VC ED+   ES +Q+ C H++H+ CI  WL   D CP+CR+ ++
Subjt:  CAVCMEDFRPDESGKQIRCGHVYHEICISSWLSVGDCCPLCRRHIS
Q9VHI7 E3 ubiquitin-protein ligase Iruka3.8e-0941.3Show/hide
Query:  CAVCMEDFRPDESGKQIRCGHVYHEICISSWLSVGDCCPLCRRHIS
        C++C +DF+ DE+ +++ C H+YHE CI  WL++   CP+CR+ ++
Subjt:  CAVCMEDFRPDESGKQIRCGHVYHEICISSWLSVGDCCPLCRRHIS
Arabidopsis top hitse value%identityAlignment
AT1G68180.1 RING/U-box superfamily protein1.4e-1145.83Show/hide
Query:  CAVCMEDFRPDESGKQIRCGHVYHEICISSWLSVGDCCPLCRRHISSG
        CA+C E+F   E GK+++C H+YH  CI SWL++ + CP+CR  ++ G
Subjt:  CAVCMEDFRPDESGKQIRCGHVYHEICISSWLSVGDCCPLCRRHISSG
AT2G39720.1 RING-H2 finger C2A2.3e-0940.82Show/hide
Query:  CAVCMEDFRPDESGKQIRCGHVYHEICISSWLSVGDCCPLCRRHISSGD
        CAVC E+F    S +++ C H+YH  CI  WL++ + CP+CR  + + D
Subjt:  CAVCMEDFRPDESGKQIRCGHVYHEICISSWLSVGDCCPLCRRHISSGD
AT2G44330.1 RING/U-box superfamily protein3.0e-0950Show/hide
Query:  CAVCMEDFRPDESGKQIRCGHVYHEICISSWLSVGDCCPLCR
        CA+C EDF   ES +++ C H+YH  CI  WL+  + CPLCR
Subjt:  CAVCMEDFRPDESGKQIRCGHVYHEICISSWLSVGDCCPLCR
AT3G19950.1 RING/U-box superfamily protein3.0e-0940.82Show/hide
Query:  CAVCMEDFRPDESGKQIRCGHVYHEICISSWLSVGDCCPLCRRHISSGD
        CAVCM++F      KQ+ C HV+H+ C+  WL + + CP+CR  + + D
Subjt:  CAVCMEDFRPDESGKQIRCGHVYHEICISSWLSVGDCCPLCRRHISSGD
AT3G60080.1 RING/U-box superfamily protein1.0e-0954.76Show/hide
Query:  CAVCMEDFRPDESGKQIRCGHVYHEICISSWLSVGDCCPLCR
        CAVC EDF   ES +++ C H+YH  CI  WLS  + CPLCR
Subjt:  CAVCMEDFRPDESGKQIRCGHVYHEICISSWLSVGDCCPLCR

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TGTGCTGTCTGCATGGAGGATTTCCGGCCGGACGAATCCGGTAAACAGATCCGCTGCGGCCATGTTTACCACGAAATTTGCATATCCTCGTGGCTCTCCGTCGGCGACTG
CTGCCCTCTCTGCCGCCGCCATATCTCCTCCGGCGACAAG
mRNA sequenceShow/hide mRNA sequence
TGTGCTGTCTGCATGGAGGATTTCCGGCCGGACGAATCCGGTAAACAGATCCGCTGCGGCCATGTTTACCACGAAATTTGCATATCCTCGTGGCTCTCCGTCGGCGACTG
CTGCCCTCTCTGCCGCCGCCATATCTCCTCCGGCGACAAG
Protein sequenceShow/hide protein sequence
CAVCMEDFRPDESGKQIRCGHVYHEICISSWLSVGDCCPLCRRHISSGDK