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MS023735 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS023735
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionE3 ubiquitin-protein ligase RHA1B-like
Genome locationscaffold570:627556..627909
RNA-Seq ExpressionMS023735
SyntenyMS023735
Gene Ontology termsGO:0006511 - ubiquitin-dependent protein catabolic process (biological process)
GO:0016567 - protein ubiquitination (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0061630 - ubiquitin protein ligase activity (molecular function)
InterPro domainsIPR001841 - Zinc finger, RING-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6599476.1 E3 ubiquitin-protein ligase RING1-like protein, partial [Cucurbita argyrosperma subsp. sororia]1.4e-4378.26Show/hide
Query:  MASVAVLAETTRNLAAAYPMELLFDLDMVLSGADDFGCCHVTAANSSDSIVADLPTVVADVCAVCFEDFRSDEGGKQIPCGHVYHEPCISSWLAVADCCP
        MA+V+V AETTRNLAAAYP+E LFDLDMVLSGADDFGCC ++A   SDS+VADLPTVVADVCAVC EDFR DE GKQIPCGHVYHE CISSWLAVA+CCP
Subjt:  MASVAVLAETTRNLAAAYPMELLFDLDMVLSGADDFGCCHVTAANSSDSIVADLPTVVADVCAVCFEDFRSDEGGKQIPCGHVYHEPCISSWLAVADCCP

Query:  LCRRRVEPPPPPSTS
        LCR  +   PP S S
Subjt:  LCRRRVEPPPPPSTS

KAG7030453.1 E3 ubiquitin-protein ligase RING1, partial [Cucurbita argyrosperma subsp. argyrosperma]1.4e-4378.26Show/hide
Query:  MASVAVLAETTRNLAAAYPMELLFDLDMVLSGADDFGCCHVTAANSSDSIVADLPTVVADVCAVCFEDFRSDEGGKQIPCGHVYHEPCISSWLAVADCCP
        MA+V+V AETTRNLAAAYP+E LFDLDMVLSGADDFGCC ++A   SDS+VADLPTVVADVCAVC EDFR DE GKQIPCGHVYHE CISSWLAVA+CCP
Subjt:  MASVAVLAETTRNLAAAYPMELLFDLDMVLSGADDFGCCHVTAANSSDSIVADLPTVVADVCAVCFEDFRSDEGGKQIPCGHVYHEPCISSWLAVADCCP

Query:  LCRRRVEPPPPPSTS
        LCR  +   PP S S
Subjt:  LCRRRVEPPPPPSTS

XP_022154667.1 E3 ubiquitin-protein ligase RHA1B-like [Momordica charantia]1.1e-6198.31Show/hide
Query:  MASVAVLAETTRNLAAAYPMELLFDLDMVLSGADDFGCCHVTAANSSDSIVADLPTVVADVCAVCFEDFRSDEGGKQIPCGHVYHEPCISSWLAVADCCP
        MA+VAVLAETTRNLAAAYPMELLFDLDMVLSG DDFGCCHVTAANSSDSIVADLPTVVADVCAVCFEDFRSDEGGKQIPCGHVYHEPCISSWLAVADCCP
Subjt:  MASVAVLAETTRNLAAAYPMELLFDLDMVLSGADDFGCCHVTAANSSDSIVADLPTVVADVCAVCFEDFRSDEGGKQIPCGHVYHEPCISSWLAVADCCP

Query:  LCRRRVEPPPPPSTSIPH
        LCRRRVEPPPPPSTSIPH
Subjt:  LCRRRVEPPPPPSTSIPH

XP_022946863.1 E3 ubiquitin-protein ligase RING1-like [Cucurbita moschata]1.8e-4378.26Show/hide
Query:  MASVAVLAETTRNLAAAYPMELLFDLDMVLSGADDFGCCHVTAANSSDSIVADLPTVVADVCAVCFEDFRSDEGGKQIPCGHVYHEPCISSWLAVADCCP
        MA+V+V AETTRNLAAAYP+E LFDLDMVLSGADDFGCC ++A   SDS+VADLPTVVADVCAVC EDFR DE GKQIPCGHVYHE CISSWLAVA+CCP
Subjt:  MASVAVLAETTRNLAAAYPMELLFDLDMVLSGADDFGCCHVTAANSSDSIVADLPTVVADVCAVCFEDFRSDEGGKQIPCGHVYHEPCISSWLAVADCCP

Query:  LCRRRVEPPPPPSTS
        LCR  +   PP S S
Subjt:  LCRRRVEPPPPPSTS

XP_023545409.1 E3 ubiquitin-protein ligase RING1-like [Cucurbita pepo subsp. pepo]5.3e-4377.39Show/hide
Query:  MASVAVLAETTRNLAAAYPMELLFDLDMVLSGADDFGCCHVTAANSSDSIVADLPTVVADVCAVCFEDFRSDEGGKQIPCGHVYHEPCISSWLAVADCCP
        MA+V+V AETTRNLA AYP+E LFDLDMVLSGADDFGCC ++A   SDS+VADLPTVVADVCAVC EDFR DE GKQIPCGHVYHE CISSWLAVA+CCP
Subjt:  MASVAVLAETTRNLAAAYPMELLFDLDMVLSGADDFGCCHVTAANSSDSIVADLPTVVADVCAVCFEDFRSDEGGKQIPCGHVYHEPCISSWLAVADCCP

Query:  LCRRRVEPPPPPSTS
        LCR  +   PP S S
Subjt:  LCRRRVEPPPPPSTS

TrEMBL top hitse value%identityAlignment
A0A0A0LKR7 RING-type domain-containing protein5.5e-3869.83Show/hide
Query:  MASVAVLAETTRNLAAAYPMELLFDLDMVLSGADDFGCCHVTAANSSDSIVADLPTVVADVCAVCFEDFRSDEGGKQIPCGHVYHEPCISSWLAVADCCP
        MA+ AV+ E T NL + YP+E LFDLD VLSGADD GCC +T    SDS VAD PTVVADVCAVC +DF  DE GKQIPCGHVYHE CISSWL VADCCP
Subjt:  MASVAVLAETTRNLAAAYPMELLFDLDMVLSGADDFGCCHVTAANSSDSIVADLPTVVADVCAVCFEDFRSDEGGKQIPCGHVYHEPCISSWLAVADCCP

Query:  LCRRRVEPPPPPSTSI
        LCR  V   PP ST I
Subjt:  LCRRRVEPPPPPSTSI

A0A1S4DZX3 RING-H2 finger protein ATL5-like1.2e-3568.38Show/hide
Query:  MASVAVLAETTRNLAAAYPMELLFDLDMVLSGADDFGC-CHVTAANSSDSIVADLPTVVADVCAVCFEDFRSDEGGKQIPCGHVYHEPCISSWLAVADCC
        MA+ AV+ E T  L + YP+E LFDLD VLSGADD  C C +T    SDS VAD PTVVADVCAVC +DFR DE GKQIPCGHVYHE CISSWL VADCC
Subjt:  MASVAVLAETTRNLAAAYPMELLFDLDMVLSGADDFGC-CHVTAANSSDSIVADLPTVVADVCAVCFEDFRSDEGGKQIPCGHVYHEPCISSWLAVADCC

Query:  PLCRRRVEPPPPPSTSI
        PLCR  V   PP ST I
Subjt:  PLCRRRVEPPPPPSTSI

A0A5A7V2P4 RING-H2 finger protein ATL5-like1.2e-3568.38Show/hide
Query:  MASVAVLAETTRNLAAAYPMELLFDLDMVLSGADDFGC-CHVTAANSSDSIVADLPTVVADVCAVCFEDFRSDEGGKQIPCGHVYHEPCISSWLAVADCC
        MA+ AV+ E T  L + YP+E LFDLD VLSGADD  C C +T    SDS VAD PTVVADVCAVC +DFR DE GKQIPCGHVYHE CISSWL VADCC
Subjt:  MASVAVLAETTRNLAAAYPMELLFDLDMVLSGADDFGC-CHVTAANSSDSIVADLPTVVADVCAVCFEDFRSDEGGKQIPCGHVYHEPCISSWLAVADCC

Query:  PLCRRRVEPPPPPSTSI
        PLCR  V   PP ST I
Subjt:  PLCRRRVEPPPPPSTSI

A0A6J1DM93 E3 ubiquitin-protein ligase RHA1B-like5.5e-6298.31Show/hide
Query:  MASVAVLAETTRNLAAAYPMELLFDLDMVLSGADDFGCCHVTAANSSDSIVADLPTVVADVCAVCFEDFRSDEGGKQIPCGHVYHEPCISSWLAVADCCP
        MA+VAVLAETTRNLAAAYPMELLFDLDMVLSG DDFGCCHVTAANSSDSIVADLPTVVADVCAVCFEDFRSDEGGKQIPCGHVYHEPCISSWLAVADCCP
Subjt:  MASVAVLAETTRNLAAAYPMELLFDLDMVLSGADDFGCCHVTAANSSDSIVADLPTVVADVCAVCFEDFRSDEGGKQIPCGHVYHEPCISSWLAVADCCP

Query:  LCRRRVEPPPPPSTSIPH
        LCRRRVEPPPPPSTSIPH
Subjt:  LCRRRVEPPPPPSTSIPH

A0A6J1G511 E3 ubiquitin-protein ligase RING1-like8.8e-4478.26Show/hide
Query:  MASVAVLAETTRNLAAAYPMELLFDLDMVLSGADDFGCCHVTAANSSDSIVADLPTVVADVCAVCFEDFRSDEGGKQIPCGHVYHEPCISSWLAVADCCP
        MA+V+V AETTRNLAAAYP+E LFDLDMVLSGADDFGCC ++A   SDS+VADLPTVVADVCAVC EDFR DE GKQIPCGHVYHE CISSWLAVA+CCP
Subjt:  MASVAVLAETTRNLAAAYPMELLFDLDMVLSGADDFGCCHVTAANSSDSIVADLPTVVADVCAVCFEDFRSDEGGKQIPCGHVYHEPCISSWLAVADCCP

Query:  LCRRRVEPPPPPSTS
        LCR  +   PP S S
Subjt:  LCRRRVEPPPPPSTS

SwissProt top hitse value%identityAlignment
O22283 Probable E3 ubiquitin-protein ligase RHC2A3.4e-0844.44Show/hide
Query:  CAVCFEDFRSDEGGKQIPCGHVYHEPCISSWLAVADCCPLCRRRV
        CAVC E+F      +++PC H+YH  CI  WLA+ + CP+CR  +
Subjt:  CAVCFEDFRSDEGGKQIPCGHVYHEPCISSWLAVADCCPLCRRRV

P90990 E3 ubiquitin-protein ligase trul-18.9e-0948.89Show/hide
Query:  CAVCFEDFRSDEGGKQIPCGHVYHEPCISSWLAVADCCPLCRRRV
        C++CFED + ++    I CGH+YH  CIS W+A    CP CRR V
Subjt:  CAVCFEDFRSDEGGKQIPCGHVYHEPCISSWLAVADCCPLCRRRV

Q9SPL2 E3 ubiquitin-protein ligase CIP81.5e-0848.94Show/hide
Query:  VCAVCFEDFRSDEGGKQIPCGHVYHEPCISSWLAVADCCPLCRRRVE
        VCAVC +     E GK++PCGH YH  CI  WL   + CP+CR ++E
Subjt:  VCAVCFEDFRSDEGGKQIPCGHVYHEPCISSWLAVADCCPLCRRRVE

Q9VHI7 E3 ubiquitin-protein ligase Iruka4.0e-0946.51Show/hide
Query:  CAVCFEDFRSDEGGKQIPCGHVYHEPCISSWLAVADCCPLCRR
        C++C++DF+ DE  +++PC H+YHE CI  WL +   CP+CR+
Subjt:  CAVCFEDFRSDEGGKQIPCGHVYHEPCISSWLAVADCCPLCRR

Q9ZV51 RING-H2 finger protein ATL561.5e-0847.83Show/hide
Query:  CAVCFEDFRSDEGGKQIP-CGHVYHEPCISSWLAVADCCPLCRRRV
        C VCF+ FR  +  + +P CGHV+H  C+ +WL  A  CP+CR RV
Subjt:  CAVCFEDFRSDEGGKQIP-CGHVYHEPCISSWLAVADCCPLCRRRV

Arabidopsis top hitse value%identityAlignment
AT1G68180.1 RING/U-box superfamily protein9.7e-1145.61Show/hide
Query:  IVADLPTVVADVCAVCFEDFRSDEGGKQIPCGHVYHEPCISSWLAVADCCPLCRRRV
        I+ D   V   VCA+C E+F   E GK++ C H+YH  CI SWL + + CP+CR  V
Subjt:  IVADLPTVVADVCAVCFEDFRSDEGGKQIPCGHVYHEPCISSWLAVADCCPLCRRRV

AT2G18670.1 RING/U-box superfamily protein1.1e-0947.83Show/hide
Query:  CAVCFEDFRSDEGGKQIP-CGHVYHEPCISSWLAVADCCPLCRRRV
        C VCF+ FR  +  + +P CGHV+H  C+ +WL  A  CP+CR RV
Subjt:  CAVCFEDFRSDEGGKQIP-CGHVYHEPCISSWLAVADCCPLCRRRV

AT2G39720.1 RING-H2 finger C2A2.4e-0944.44Show/hide
Query:  CAVCFEDFRSDEGGKQIPCGHVYHEPCISSWLAVADCCPLCRRRV
        CAVC E+F      +++PC H+YH  CI  WLA+ + CP+CR  +
Subjt:  CAVCFEDFRSDEGGKQIPCGHVYHEPCISSWLAVADCCPLCRRRV

AT3G60080.1 RING/U-box superfamily protein1.4e-0951.16Show/hide
Query:  VCAVCFEDFRSDEGGKQIPCGHVYHEPCISSWLAVADCCPLCR
        +CAVC EDF   E  +++PC H+YH  CI  WL+  + CPLCR
Subjt:  VCAVCFEDFRSDEGGKQIPCGHVYHEPCISSWLAVADCCPLCR

AT5G64920.1 COP1-interacting protein 81.1e-0948.94Show/hide
Query:  VCAVCFEDFRSDEGGKQIPCGHVYHEPCISSWLAVADCCPLCRRRVE
        VCAVC +     E GK++PCGH YH  CI  WL   + CP+CR ++E
Subjt:  VCAVCFEDFRSDEGGKQIPCGHVYHEPCISSWLAVADCCPLCRRRVE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCCGTTGCTGTGTTGGCCGAGACGACAAGAAACTTAGCGGCGGCGTATCCAATGGAGCTTCTATTTGACCTGGACATGGTTCTCTCCGGCGCCGACGACTTCGG
TTGCTGCCACGTCACCGCGGCTAATTCCTCCGATTCTATTGTAGCGGATTTGCCGACGGTGGTGGCCGACGTTTGCGCCGTTTGCTTCGAGGATTTCCGGTCAGACGAGG
GCGGAAAGCAAATCCCCTGCGGACACGTGTACCATGAGCCTTGCATCTCCTCCTGGCTCGCAGTCGCCGACTGCTGCCCCCTCTGCCGCCGCCGAGTGGAACCCCCTCCT
CCTCCTTCCACTTCCATTCCCCAC
mRNA sequenceShow/hide mRNA sequence
ATGGCTTCCGTTGCTGTGTTGGCCGAGACGACAAGAAACTTAGCGGCGGCGTATCCAATGGAGCTTCTATTTGACCTGGACATGGTTCTCTCCGGCGCCGACGACTTCGG
TTGCTGCCACGTCACCGCGGCTAATTCCTCCGATTCTATTGTAGCGGATTTGCCGACGGTGGTGGCCGACGTTTGCGCCGTTTGCTTCGAGGATTTCCGGTCAGACGAGG
GCGGAAAGCAAATCCCCTGCGGACACGTGTACCATGAGCCTTGCATCTCCTCCTGGCTCGCAGTCGCCGACTGCTGCCCCCTCTGCCGCCGCCGAGTGGAACCCCCTCCT
CCTCCTTCCACTTCCATTCCCCAC
Protein sequenceShow/hide protein sequence
MASVAVLAETTRNLAAAYPMELLFDLDMVLSGADDFGCCHVTAANSSDSIVADLPTVVADVCAVCFEDFRSDEGGKQIPCGHVYHEPCISSWLAVADCCPLCRRRVEPPP
PPSTSIPH