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MS023762 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS023762
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionCCHC-type domain-containing protein
Genome locationscaffold486:109411..109695
RNA-Seq ExpressionMS023762
SyntenyMS023762
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsIPR025836 - Zinc knuckle CX2CX4HX4C
IPR040256 - Uncharacterized protein At4g02000-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
PON78322.1 Zinc knuckle CX2CX4HX4C [Parasponia andersonii]3.1e-1745.83Show/hide
Query:  WVQIQNVPFSCLTRAMAMMLGGSLGIVEDVDCGSSRTWLGGFLRVWVRIDITKPFRWGIKLKL-DAGREVWCPIQYERLLDFCYQCGLMRHSLREC
        WVQIQN P SC+T  +A  LG  +  +E++D G++   LG F+RV V+ D+TKP R  I +++ D   E+   +QYE+L DFC  CG+M H  REC
Subjt:  WVQIQNVPFSCLTRAMAMMLGGSLGIVEDVDCGSSRTWLGGFLRVWVRIDITKPFRWGIKLKL-DAGREVWCPIQYERLLDFCYQCGLMRHSLREC

XP_022149484.1 uncharacterized protein LOC111017902 [Momordica charantia]2.0e-2451.58Show/hide
Query:  WVQIQNVPFSCLTRAMAMMLGGSLGIVEDVDCGSSRTWLGGFLRVWVRIDITKPFRWGIKLKLDAGREVWCPIQYERLLDFCYQCGLMRHSLREC
        W+QI N+PF C++  MA +LG  LG VE+++   +  W G F+RV V+ID++KP R GIKLK   G+++WCP++YE+L DFCY+CG + HS REC
Subjt:  WVQIQNVPFSCLTRAMAMMLGGSLGIVEDVDCGSSRTWLGGFLRVWVRIDITKPFRWGIKLKLDAGREVWCPIQYERLLDFCYQCGLMRHSLREC

XP_022156185.1 uncharacterized protein LOC111023135 [Momordica charantia]2.0e-1646.88Show/hide
Query:  WVQIQNVPFSCLTRAMAMMLGGSLGIVEDVDCGSSRTWLGGFLRVWVRIDITKPFRWGIKLKLDAGR-EVWCPIQYERLLDFCYQCGLMRHSLREC
        W+ + ++P S L + MA+ LG ++G   DVDC       G  LR+ V IDITKP R GIK+ +D      W PIQYERL DFCY CG++ HS  +C
Subjt:  WVQIQNVPFSCLTRAMAMMLGGSLGIVEDVDCGSSRTWLGGFLRVWVRIDITKPFRWGIKLKLDAGR-EVWCPIQYERLLDFCYQCGLMRHSLREC

XP_022156711.1 uncharacterized protein LOC111023555 [Momordica charantia]9.3e-2252.13Show/hide
Query:  WVQIQNVPFSCLTRAMAMMLGGSLGIVEDVDCGSSRTWLGGFLRVWVRIDITKPFRWGIKLKLDAGREVWCPIQYERLLDFCYQCGLMRHSLRE
        WVQI  + F C+T+ MA  LG  LG VE+VD  SS  W+  FL V V+I++ KP R G+K+K   G+++WCP++YERL DFCY CG + HS+RE
Subjt:  WVQIQNVPFSCLTRAMAMMLGGSLGIVEDVDCGSSRTWLGGFLRVWVRIDITKPFRWGIKLKLDAGREVWCPIQYERLLDFCYQCGLMRHSLRE

XP_030949448.1 uncharacterized protein LOC115973328 [Quercus lobata]5.8e-1643.16Show/hide
Query:  WVQIQNVPFSCLTRAMAMMLGGSLGIVEDVDCGSSRTWLGGFLRVWVRIDITKPFRWGIKLKLDAGREVWCPIQYERLLDFCYQCGLMRHSLREC
        WVQI N+P +C T+ + + +G  LG V ++D   S    G  LRV V +D+TK    G K+ ++ G   W   +YERL +FCYQCGL+ H+L+EC
Subjt:  WVQIQNVPFSCLTRAMAMMLGGSLGIVEDVDCGSSRTWLGGFLRVWVRIDITKPFRWGIKLKLDAGREVWCPIQYERLLDFCYQCGLMRHSLREC

TrEMBL top hitse value%identityAlignment
A0A2P5DYF4 Zinc knuckle CX2CX4HX4C1.5e-1745.83Show/hide
Query:  WVQIQNVPFSCLTRAMAMMLGGSLGIVEDVDCGSSRTWLGGFLRVWVRIDITKPFRWGIKLKL-DAGREVWCPIQYERLLDFCYQCGLMRHSLREC
        WVQIQN P SC+T  +A  LG  +  +E++D G++   LG F+RV V+ D+TKP R  I +++ D   E+   +QYE+L DFC  CG+M H  REC
Subjt:  WVQIQNVPFSCLTRAMAMMLGGSLGIVEDVDCGSSRTWLGGFLRVWVRIDITKPFRWGIKLKL-DAGREVWCPIQYERLLDFCYQCGLMRHSLREC

A0A5C7HA98 CCHC-type domain-containing protein4.8e-1646.88Show/hide
Query:  WVQIQNVPFSCLTRAMAMMLGGSLGIVEDVDCGSSRTWLGGFLRVWVRIDITKPFRWGIKLK-LDAGREVWCPIQYERLLDFCYQCGLMRHSLREC
        WVQI N+P  C+T+ +A  LGG +G V +VD G +   LG F+RV V +DITKP R  + +  L    E   PIQYERL  FC++CGL+ H++  C
Subjt:  WVQIQNVPFSCLTRAMAMMLGGSLGIVEDVDCGSSRTWLGGFLRVWVRIDITKPFRWGIKLK-LDAGREVWCPIQYERLLDFCYQCGLMRHSLREC

A0A6J1D765 uncharacterized protein LOC1110179029.6e-2551.58Show/hide
Query:  WVQIQNVPFSCLTRAMAMMLGGSLGIVEDVDCGSSRTWLGGFLRVWVRIDITKPFRWGIKLKLDAGREVWCPIQYERLLDFCYQCGLMRHSLREC
        W+QI N+PF C++  MA +LG  LG VE+++   +  W G F+RV V+ID++KP R GIKLK   G+++WCP++YE+L DFCY+CG + HS REC
Subjt:  WVQIQNVPFSCLTRAMAMMLGGSLGIVEDVDCGSSRTWLGGFLRVWVRIDITKPFRWGIKLKLDAGREVWCPIQYERLLDFCYQCGLMRHSLREC

A0A6J1DU55 uncharacterized protein LOC1110231359.7e-1746.88Show/hide
Query:  WVQIQNVPFSCLTRAMAMMLGGSLGIVEDVDCGSSRTWLGGFLRVWVRIDITKPFRWGIKLKLDAGR-EVWCPIQYERLLDFCYQCGLMRHSLREC
        W+ + ++P S L + MA+ LG ++G   DVDC       G  LR+ V IDITKP R GIK+ +D      W PIQYERL DFCY CG++ HS  +C
Subjt:  WVQIQNVPFSCLTRAMAMMLGGSLGIVEDVDCGSSRTWLGGFLRVWVRIDITKPFRWGIKLKLDAGR-EVWCPIQYERLLDFCYQCGLMRHSLREC

A0A6J1DVS4 uncharacterized protein LOC1110235554.5e-2252.13Show/hide
Query:  WVQIQNVPFSCLTRAMAMMLGGSLGIVEDVDCGSSRTWLGGFLRVWVRIDITKPFRWGIKLKLDAGREVWCPIQYERLLDFCYQCGLMRHSLRE
        WVQI  + F C+T+ MA  LG  LG VE+VD  SS  W+  FL V V+I++ KP R G+K+K   G+++WCP++YERL DFCY CG + HS+RE
Subjt:  WVQIQNVPFSCLTRAMAMMLGGSLGIVEDVDCGSSRTWLGGFLRVWVRIDITKPFRWGIKLKLDAGREVWCPIQYERLLDFCYQCGLMRHSLRE

SwissProt top hitse value%identityAlignment
O04244 Uncharacterized protein At4g020008.7e-0729.47Show/hide
Query:  WVQIQNVPFSCLTRAMAMMLGGSLGIVEDVDCGSSRTWLGGFLRVWVRIDITKPFRWGIKLKLDAGREVWCPIQYERLLDFCYQCGLMRHSLREC
        WVQ++ +P   +    A+ +   LG +  +D   S T    ++RV +R  IT   R+  ++  D G       QYERL   C  C  M H    C
Subjt:  WVQIQNVPFSCLTRAMAMMLGGSLGIVEDVDCGSSRTWLGGFLRVWVRIDITKPFRWGIKLKLDAGREVWCPIQYERLLDFCYQCGLMRHSLREC

Arabidopsis top hitse value%identityAlignment
AT2G02103.1 unknown protein1.8e-0729.47Show/hide
Query:  WVQIQNVPFSCLTRAMAMMLGGSLGIVEDVDCGSSRTWLGGFLRVWVRIDITKPFRWGIKLKLDAGREVWCPIQYERLLDFCYQCGLMRHSLREC
        WVQI+ +P   ++    M +   LG +  +D   + +    F+RV VR  IT   R+  ++  D+G       QYERL   C  C    H+   C
Subjt:  WVQIQNVPFSCLTRAMAMMLGGSLGIVEDVDCGSSRTWLGGFLRVWVRIDITKPFRWGIKLKLDAGREVWCPIQYERLLDFCYQCGLMRHSLREC

AT2G13450.1 unknown protein7.3e-0929.47Show/hide
Query:  WVQIQNVPFSCLTRAMAMMLGGSLGIVEDVDCGSSRTWLGGFLRVWVRIDITKPFRWGIKLKLDAGREVWCPIQYERLLDFCYQCGLMRHSLREC
        WVQ++ +P   +    A+ +   LG +  +D   S T    ++RV +R  IT   R+ +++  D+G       QYERL   C  C  M H    C
Subjt:  WVQIQNVPFSCLTRAMAMMLGGSLGIVEDVDCGSSRTWLGGFLRVWVRIDITKPFRWGIKLKLDAGREVWCPIQYERLLDFCYQCGLMRHSLREC

AT2G17920.1 nucleic acid binding;zinc ion binding2.8e-0826.32Show/hide
Query:  WVQIQNVPFSCLTRAMAMMLGGSLGIVEDVDCGSSRTWLGGFLRVWVRIDITKPFRWGIKLKLDAGREVWCPIQYERLLDFCYQCGLMRHSLREC
        WVQ++ +PF  ++   A+ +   +G +  +D   + +    ++RV VR+ IT   R+  ++  ++G       QYERL   C  C    H+   C
Subjt:  WVQIQNVPFSCLTRAMAMMLGGSLGIVEDVDCGSSRTWLGGFLRVWVRIDITKPFRWGIKLKLDAGREVWCPIQYERLLDFCYQCGLMRHSLREC

AT4G02000.1 unknown protein6.2e-0829.47Show/hide
Query:  WVQIQNVPFSCLTRAMAMMLGGSLGIVEDVDCGSSRTWLGGFLRVWVRIDITKPFRWGIKLKLDAGREVWCPIQYERLLDFCYQCGLMRHSLREC
        WVQ++ +P   +    A+ +   LG +  +D   S T    ++RV +R  IT   R+  ++  D G       QYERL   C  C  M H    C
Subjt:  WVQIQNVPFSCLTRAMAMMLGGSLGIVEDVDCGSSRTWLGGFLRVWVRIDITKPFRWGIKLKLDAGREVWCPIQYERLLDFCYQCGLMRHSLREC

AT5G36228.1 nucleic acid binding;zinc ion binding8.1e-0826.32Show/hide
Query:  WVQIQNVPFSCLTRAMAMMLGGSLGIVEDVDCGSSRTWLGGFLRVWVRIDITKPFRWGIKLKLDAGREVWCPIQYERLLDFCYQCGLMRHSLREC
        WV I+ +P   ++     ++  +LG V  +D     T    F+RV VR+D T+P R+  +++  +        +YE+L   C  C  + H +  C
Subjt:  WVQIQNVPFSCLTRAMAMMLGGSLGIVEDVDCGSSRTWLGGFLRVWVRIDITKPFRWGIKLKLDAGREVWCPIQYERLLDFCYQCGLMRHSLREC


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TGGGTTCAGATTCAAAATGTCCCATTCTCTTGTCTGACGAGGGCGATGGCAATGATGTTGGGTGGCTCTCTGGGAATAGTCGAGGATGTTGACTGTGGTAGCTCTCGTAC
GTGGCTTGGGGGCTTTTTGCGGGTTTGGGTACGCATTGATATCACGAAGCCTTTCCGTTGGGGTATTAAGCTCAAGCTTGACGCGGGGAGAGAAGTGTGGTGCCCCATCC
AATATGAACGACTCTTGGATTTTTGTTACCAATGTGGTTTGATGAGGCATTCGCTTCGCGAATGT
mRNA sequenceShow/hide mRNA sequence
TGGGTTCAGATTCAAAATGTCCCATTCTCTTGTCTGACGAGGGCGATGGCAATGATGTTGGGTGGCTCTCTGGGAATAGTCGAGGATGTTGACTGTGGTAGCTCTCGTAC
GTGGCTTGGGGGCTTTTTGCGGGTTTGGGTACGCATTGATATCACGAAGCCTTTCCGTTGGGGTATTAAGCTCAAGCTTGACGCGGGGAGAGAAGTGTGGTGCCCCATCC
AATATGAACGACTCTTGGATTTTTGTTACCAATGTGGTTTGATGAGGCATTCGCTTCGCGAATGT
Protein sequenceShow/hide protein sequence
WVQIQNVPFSCLTRAMAMMLGGSLGIVEDVDCGSSRTWLGGFLRVWVRIDITKPFRWGIKLKLDAGREVWCPIQYERLLDFCYQCGLMRHSLREC