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MS023784 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS023784
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionzf-RVT domain-containing protein
Genome locationscaffold207:346522..346788
RNA-Seq ExpressionMS023784
SyntenyMS023784
Gene Ontology termsGO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAN78771.1 hypothetical protein VITISV_013622 [Vitis vinifera]4.3e-0534.41Show/hide
Query:  FWLDLWLGDSVFKDRFP--HAVAKFPFSSVFDNW---DGHSSSWIVETRRNPKESEAEDYLPILSTLNLVSFSTEDDKLLWNLEASKVFSVKS
        FW D+W+GDS  K  FP    +A +  ++V D W    G    W V  RR+ ++ E E+    L  +  V    E+D L+W +E    F+VKS
Subjt:  FWLDLWLGDSVFKDRFP--HAVAKFPFSSVFDNW---DGHSSSWIVETRRNPKESEAEDYLPILSTLNLVSFSTEDDKLLWNLEASKVFSVKS

MCH99327.1 ribonuclease H protein [Trifolium medium]3.3e-0539.13Show/hide
Query:  FWLDLWLGDSVFKDRFPH--AVAKFPFSSVFDNW--DGHSSSWIVETRRNPKESEAEDYLPILSTLNLVSFSTEDDKLLWNLEASKVFSVKS
        FW D W+GD+  KDRFP   +++     SV   W  DG S  W +E RR     E+  +  ++  +N V+ S E+DK  W L+ + VFSVKS
Subjt:  FWLDLWLGDSVFKDRFPH--AVAKFPFSSVFDNW--DGHSSSWIVETRRNPKESEAEDYLPILSTLNLVSFSTEDDKLLWNLEASKVFSVKS

RVW49903.1 hypothetical protein CK203_093837 [Vitis vinifera]2.5e-0534.78Show/hide
Query:  FWLDLWLGDSVFKDRFP--HAVAKFPFSSVFDNW--DGHSSSWIVETRRNPKESEAEDYLPILSTLNLVSFSTEDDKLLWNLEASKVFSVKS
        FW D W+G+S  KD FP  + +A    + V D W   G    W V+ RR+ ++ E E+   +L+ ++ V     +D L+W +E    FSVKS
Subjt:  FWLDLWLGDSVFKDRFP--HAVAKFPFSSVFDNW--DGHSSSWIVETRRNPKESEAEDYLPILSTLNLVSFSTEDDKLLWNLEASKVFSVKS

RVW60989.1 putative ribonuclease H protein [Vitis vinifera]1.1e-0536.17Show/hide
Query:  FWLDLWLGDSVFKDRFPHAV-----AKFPFSSVFDNWDGHSSSWIVETRRNPKESEAEDYLPILSTLNLVSFSTE-DDKLLWNLEASKVFSVKS
        FW DLW GD + KD++P           P SS+F +     SSW    RRN  +SE ED   ++ +L+ ++ ST   +   W+L +S +F+VKS
Subjt:  FWLDLWLGDSVFKDRFPHAV-----AKFPFSSVFDNWDGHSSSWIVETRRNPKESEAEDYLPILSTLNLVSFSTE-DDKLLWNLEASKVFSVKS

XP_022155195.1 uncharacterized protein LOC111022333 [Momordica charantia]1.2e-0738.46Show/hide
Query:  FWLDLWLGDSVFKDRFP--HAVAKFPFSSVFDNWDGHSSSWIVETRRNPKESEAEDYLPILSTLNLVSFSTEDDKLLWNLEASKVFSVKSL
        FW   W+ +   KDRF   + ++  P  SV + WD  + SW + TRR  K+ E E++  +L  L+  S S E D+ LW+LE S +FSV S+
Subjt:  FWLDLWLGDSVFKDRFP--HAVAKFPFSSVFDNWDGHSSSWIVETRRNPKESEAEDYLPILSTLNLVSFSTEDDKLLWNLEASKVFSVKSL

TrEMBL top hitse value%identityAlignment
A0A392NHI5 Ribonuclease H protein (Fragment)1.6e-0539.13Show/hide
Query:  FWLDLWLGDSVFKDRFPH--AVAKFPFSSVFDNW--DGHSSSWIVETRRNPKESEAEDYLPILSTLNLVSFSTEDDKLLWNLEASKVFSVKS
        FW D W+GD+  KDRFP   +++     SV   W  DG S  W +E RR     E+  +  ++  +N V+ S E+DK  W L+ + VFSVKS
Subjt:  FWLDLWLGDSVFKDRFPH--AVAKFPFSSVFDNW--DGHSSSWIVETRRNPKESEAEDYLPILSTLNLVSFSTEDDKLLWNLEASKVFSVKS

A0A438EQ96 zf-RVT domain-containing protein1.2e-0534.78Show/hide
Query:  FWLDLWLGDSVFKDRFP--HAVAKFPFSSVFDNW--DGHSSSWIVETRRNPKESEAEDYLPILSTLNLVSFSTEDDKLLWNLEASKVFSVKS
        FW D W+G+S  KD FP  + +A    + V D W   G    W V+ RR+ ++ E E+   +L+ ++ V     +D L+W +E    FSVKS
Subjt:  FWLDLWLGDSVFKDRFP--HAVAKFPFSSVFDNW--DGHSSSWIVETRRNPKESEAEDYLPILSTLNLVSFSTEDDKLLWNLEASKVFSVKS

A0A6J1DLR8 uncharacterized protein LOC1110223335.9e-0838.46Show/hide
Query:  FWLDLWLGDSVFKDRFP--HAVAKFPFSSVFDNWDGHSSSWIVETRRNPKESEAEDYLPILSTLNLVSFSTEDDKLLWNLEASKVFSVKSL
        FW   W+ +   KDRF   + ++  P  SV + WD  + SW + TRR  K+ E E++  +L  L+  S S E D+ LW+LE S +FSV S+
Subjt:  FWLDLWLGDSVFKDRFP--HAVAKFPFSSVFDNWDGHSSSWIVETRRNPKESEAEDYLPILSTLNLVSFSTEDDKLLWNLEASKVFSVKSL

A5B8Z5 Uncharacterized protein2.1e-0534.41Show/hide
Query:  FWLDLWLGDSVFKDRFP--HAVAKFPFSSVFDNW---DGHSSSWIVETRRNPKESEAEDYLPILSTLNLVSFSTEDDKLLWNLEASKVFSVKS
        FW D+W+GDS  K  FP    +A +  ++V D W    G    W V  RR+ ++ E E+    L  +  V    E+D L+W +E    F+VKS
Subjt:  FWLDLWLGDSVFKDRFP--HAVAKFPFSSVFDNW---DGHSSSWIVETRRNPKESEAEDYLPILSTLNLVSFSTEDDKLLWNLEASKVFSVKS

Q2R9U7 Retrotransposon protein, putative, unclassified2.1e-0535.16Show/hide
Query:  FWLDLWLGDSVFKDRFP--HAVAKFPFSSVFDNWDGHSSSWIVETRRNPKESEAEDYLPILSTLNLVSFSTEDDKLLWNLEASKVFSVKSL
        FW D+WLGD+  K +FP  +++   P  +V   W   S  W ++ RR+    E  ++  +L+ L  V  ST+ D++ W L  S  FS KSL
Subjt:  FWLDLWLGDSVFKDRFP--HAVAKFPFSSVFDNWDGHSSSWIVETRRNPKESEAEDYLPILSTLNLVSFSTEDDKLLWNLEASKVFSVKSL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TTTTGGCTTGACTTGTGGTTAGGTGATTCGGTTTTTAAAGATCGTTTTCCTCATGCGGTGGCAAAGTTTCCCTTCAGTTCTGTTTTTGATAATTGGGATGGGCATTCTTC
TTCTTGGATCGTTGAAACTAGAAGAAACCCCAAAGAATCAGAGGCTGAGGATTATTTACCCATTCTGTCCACTTTGAACTTGGTGTCTTTTTCAACAGAGGATGATAAAC
TACTGTGGAATCTTGAAGCGTCAAAGGTTTTTTCAGTAAAATCTTTA
mRNA sequenceShow/hide mRNA sequence
TTTTGGCTTGACTTGTGGTTAGGTGATTCGGTTTTTAAAGATCGTTTTCCTCATGCGGTGGCAAAGTTTCCCTTCAGTTCTGTTTTTGATAATTGGGATGGGCATTCTTC
TTCTTGGATCGTTGAAACTAGAAGAAACCCCAAAGAATCAGAGGCTGAGGATTATTTACCCATTCTGTCCACTTTGAACTTGGTGTCTTTTTCAACAGAGGATGATAAAC
TACTGTGGAATCTTGAAGCGTCAAAGGTTTTTTCAGTAAAATCTTTA
Protein sequenceShow/hide protein sequence
FWLDLWLGDSVFKDRFPHAVAKFPFSSVFDNWDGHSSSWIVETRRNPKESEAEDYLPILSTLNLVSFSTEDDKLLWNLEASKVFSVKSL