CuGenDBv2

Gene ID	MS023798
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	RNase H domain-containing protein
Genome location	scaffold207:556425..556748
RNA-Seq Expression	MS023798
Synteny	MS023798
Gene Ontology terms	GO:0003824 - catalytic activity (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

XP_009113118.1 uncharacterized protein LOC103838431 [Brassica rapa]

2.7e-09

32.41

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Query:  IVWQIWERRNGVIFKGEQPDSKSNQIAIDKYIEQISGHNTNQAESSLRGNANLANFKKQFGHELEPPTSNSLKLNTDAAWRVDLVIDGLDWVIRNERGEI
        ++W++W+ RN  +FKG + +++S    + + +E+       +A  + R  A +     Q     +PP +N LK N+D AW  + V  GL WV+RNE+G +
Subjt:  IVWQIWERRNGVIFKGEQPDSKSNQIAIDKYIEQISGHNTNQAESSLRGNANLANFKKQFGHELEPPTSNSLKLNTDAAWRVDLVIDGLDWVIRNERGEI

Query:  IKAGCKAL
        + AG KA+
Subjt:  IKAGCKAL

XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]

1.2e-20

46.79

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Query:  IVWQIWERRNGVIFKGEQPDSKSNQIAIDKYIEQISGHNTNQAESSLRGNANL-ANFKKQFGHELEPPTSNSLKLNTDAAWRVDLVIDGLDWVIRNERGE
        I WQIWE RN  IFKG  P+++  Q+AID+YI   +G NTN    S   + +L    +   G + +PPTSNS KLNT+AAWR D    G+ W++R+E+GE
Subjt:  IVWQIWERRNGVIFKGEQPDSKSNQIAIDKYIEQISGHNTNQAESSLRGNANL-ANFKKQFGHELEPPTSNSLKLNTDAAWRVDLVIDGLDWVIRNERGE

Query:  IIKAGCKAL
        +IKA C+ +
Subjt:  IIKAGCKAL

XP_022154990.1 uncharacterized protein LOC111022134 isoform X1 [Momordica charantia]

2.7e-17

44.44

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Query:  IVWQIWERRNGVIFKGEQPDSKSNQIAIDKYIEQISGHNTNQAESSLRGNANLANFKKQFGHELEPPTSNSLKLNTDAAWRVDLVIDGLDWVIRNERGEI
        I  QIWE RN  IFKG   +++  Q+AID+YI   +G +TN    S +    +           +PPTSNS KLNTDAAWR D   DG+ W++R+E+GE+
Subjt:  IVWQIWERRNGVIFKGEQPDSKSNQIAIDKYIEQISGHNTNQAESSLRGNANLANFKKQFGHELEPPTSNSLKLNTDAAWRVDLVIDGLDWVIRNERGEI

Query:  IKAGCKAL
        IK GC+ +
Subjt:  IKAGCKAL

XP_022154991.1 uncharacterized protein LOC111022134 isoform X2 [Momordica charantia]

2.7e-17

44.44

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Query:  IVWQIWERRNGVIFKGEQPDSKSNQIAIDKYIEQISGHNTNQAESSLRGNANLANFKKQFGHELEPPTSNSLKLNTDAAWRVDLVIDGLDWVIRNERGEI
        I  QIWE RN  IFKG   +++  Q+AID+YI   +G +TN    S +    +           +PPTSNS KLNTDAAWR D   DG+ W++R+E+GE+
Subjt:  IVWQIWERRNGVIFKGEQPDSKSNQIAIDKYIEQISGHNTNQAESSLRGNANLANFKKQFGHELEPPTSNSLKLNTDAAWRVDLVIDGLDWVIRNERGEI

Query:  IKAGCKAL
        IK GC+ +
Subjt:  IKAGCKAL

XP_022156777.1 uncharacterized protein LOC111023608 [Momordica charantia]

1.4e-18

44.95

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Query:  IVWQIWERRNGVIFKGEQPDSKSNQIAIDKYIEQISGHNTNQAESSLRGNANL-ANFKKQFGHELEPPTSNSLKLNTDAAWRVDLVIDGLDWVIRNERGE
        I WQIWE RN  IFKG   +++  Q+ ID+YI   +G +TN    S   + +L        G   +PPTSNS KLNTDAAWR D    G+ W++R+E+GE
Subjt:  IVWQIWERRNGVIFKGEQPDSKSNQIAIDKYIEQISGHNTNQAESSLRGNANL-ANFKKQFGHELEPPTSNSLKLNTDAAWRVDLVIDGLDWVIRNERGE

Query:  IIKAGCKAL
        +IKA C+ +
Subjt:  IIKAGCKAL

TrEMBL top hits

e value

%identity

Alignment

A0A6J1CP26 uncharacterized protein LOC111013412

5.6e-21

46.79

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Query:  IVWQIWERRNGVIFKGEQPDSKSNQIAIDKYIEQISGHNTNQAESSLRGNANL-ANFKKQFGHELEPPTSNSLKLNTDAAWRVDLVIDGLDWVIRNERGE
        I WQIWE RN  IFKG  P+++  Q+AID+YI   +G NTN    S   + +L    +   G + +PPTSNS KLNT+AAWR D    G+ W++R+E+GE
Subjt:  IVWQIWERRNGVIFKGEQPDSKSNQIAIDKYIEQISGHNTNQAESSLRGNANL-ANFKKQFGHELEPPTSNSLKLNTDAAWRVDLVIDGLDWVIRNERGE

Query:  IIKAGCKAL
        +IKA C+ +
Subjt:  IIKAGCKAL

A0A6J1CQG0 uncharacterized protein LOC111013216

1.6e-07

36.21

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Query:  IVWQIWERRNGVIFKGEQPDSKSNQIAIDKYIEQ-------ISGHNTNQAESSL--RGNANLANFKKQFGHELEPPTSNSLKLNTDAAWRVDLVIDGLDW
        I WQIWE RN  IF+GE  D +    +I  +I         IS    +Q       RG  NL       G     P +N  KLNTDA+W  +  + G+ W
Subjt:  IVWQIWERRNGVIFKGEQPDSKSNQIAIDKYIEQ-------ISGHNTNQAESSL--RGNANLANFKKQFGHELEPPTSNSLKLNTDAAWRVDLVIDGLDW

Query:  VIRNERGEIIKAG-CK
        ++ + RGEI+ AG CK
Subjt:  VIRNERGEIIKAG-CK

A0A6J1DL64 uncharacterized protein LOC111022134 isoform X1

1.3e-17

44.44

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Query:  IVWQIWERRNGVIFKGEQPDSKSNQIAIDKYIEQISGHNTNQAESSLRGNANLANFKKQFGHELEPPTSNSLKLNTDAAWRVDLVIDGLDWVIRNERGEI
        I  QIWE RN  IFKG   +++  Q+AID+YI   +G +TN    S +    +           +PPTSNS KLNTDAAWR D   DG+ W++R+E+GE+
Subjt:  IVWQIWERRNGVIFKGEQPDSKSNQIAIDKYIEQISGHNTNQAESSLRGNANLANFKKQFGHELEPPTSNSLKLNTDAAWRVDLVIDGLDWVIRNERGEI

Query:  IKAGCKAL
        IK GC+ +
Subjt:  IKAGCKAL

A0A6J1DQC9 uncharacterized protein LOC111022134 isoform X2

1.3e-17

44.44

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Query:  IVWQIWERRNGVIFKGEQPDSKSNQIAIDKYIEQISGHNTNQAESSLRGNANLANFKKQFGHELEPPTSNSLKLNTDAAWRVDLVIDGLDWVIRNERGEI
        I  QIWE RN  IFKG   +++  Q+AID+YI   +G +TN    S +    +           +PPTSNS KLNTDAAWR D   DG+ W++R+E+GE+
Subjt:  IVWQIWERRNGVIFKGEQPDSKSNQIAIDKYIEQISGHNTNQAESSLRGNANLANFKKQFGHELEPPTSNSLKLNTDAAWRVDLVIDGLDWVIRNERGEI

Query:  IKAGCKAL
        IK GC+ +
Subjt:  IKAGCKAL

A0A6J1DSV1 uncharacterized protein LOC111023608

6.9e-19

44.95

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Query:  IVWQIWERRNGVIFKGEQPDSKSNQIAIDKYIEQISGHNTNQAESSLRGNANL-ANFKKQFGHELEPPTSNSLKLNTDAAWRVDLVIDGLDWVIRNERGE
        I WQIWE RN  IFKG   +++  Q+ ID+YI   +G +TN    S   + +L        G   +PPTSNS KLNTDAAWR D    G+ W++R+E+GE
Subjt:  IVWQIWERRNGVIFKGEQPDSKSNQIAIDKYIEQISGHNTNQAESSLRGNANL-ANFKKQFGHELEPPTSNSLKLNTDAAWRVDLVIDGLDWVIRNERGE

Query:  IIKAGCKAL
        +IKA C+ +
Subjt:  IIKAGCKAL

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G34320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein

4.4e-10

26.85

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Query:  IVWQIWERRNGVIFKGEQPDSKSNQIAIDKYIEQISGHNTNQAESSLRGNANLANFKKQFGHELEPPTSNSLKLNTDAAWRVDLVIDGLDWVIRNERGEI
        ++W++W+ RN ++FKG++ D+      + + +E     +T +    L G A+    ++    + + P    +K NTDA W+++    G+ W++RNE G +
Subjt:  IVWQIWERRNGVIFKGEQPDSKSNQIAIDKYIEQISGHNTNQAESSLRGNANLANFKKQFGHELEPPTSNSLKLNTDAAWRVDLVIDGLDWVIRNERGEI

Query:  IKAGCKAL
        +  G +AL
Subjt:  IKAGCKAL

AT4G29090.1 Ribonuclease H-like superfamily protein

6.4e-09

28.57

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Query:  IVWQIWERRNGVIFKGEQPDSKSNQIAIDKYIEQISGHNTNQAESSLRGNANLANFKKQFGH----ELEPPTSNSLKLNTDAAWRVDLVIDGLDWVIRNE
        ++W++W+ RN ++F+G + +++          E +     +  E  +R  A     K Q          PP    +K NTDA W  D    G+ WV+RNE
Subjt:  IVWQIWERRNGVIFKGEQPDSKSNQIAIDKYIEQISGHNTNQAESSLRGNANLANFKKQFGH----ELEPPTSNSLKLNTDAAWRVDLVIDGLDWVIRNE

Query:  RGEIIKAGCKAL
        +GE+   G +AL
Subjt:  RGEIIKAGCKAL

Sequences

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CDS sequence

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ATTGTGTGGCAAATATGGGAGAGGAGAAATGGAGTTATTTTCAAAGGAGAACAACCAGATAGCAAAAGTAATCAAATAGCAATTGACAAGTATATTGAACAAATCTCAGG
TCACAATACAAATCAAGCAGAATCATCTTTAAGAGGAAATGCGAACCTAGCGAACTTCAAAAAACAATTCGGCCACGAACTGGAACCCCCAACTTCCAATTCTTTGAAGT
TGAATACTGATGCGGCTTGGCGAGTAGATCTGGTCATCGACGGTTTGGACTGGGTAATAAGAAATGAGAGAGGGGAGATTATCAAAGCAGGGTGTAAGGCACTT

mRNA sequence

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Protein sequence

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IVWQIWERRNGVIFKGEQPDSKSNQIAIDKYIEQISGHNTNQAESSLRGNANLANFKKQFGHELEPPTSNSLKLNTDAAWRVDLVIDGLDWVIRNERGEIIKAGCKAL

MS023798 (gene) of Bitter gourd (TR) v1 genome