| GenBank top hits | e value | %identity | Alignment |
|---|
| XP_022158561.1 DNA-directed RNA polymerase V subunit 5A [Momordica charantia] | 4.9e-122 | 99.56 | Show/hide |
Query: MEEDGFEGEPNRVELGTCLSSYIDNGSTESHRYFLSRRTVLEMLRDRGYTPTTSDADLTLQQFREIYGQSPDVDRLKLSAVHRSDPSKRILVIFCGTGSV
MEEDGFEGEPNRVELGTCLSSYIDNGSTESHRYFL RRTVLEMLRDRGYTPTTSDADLTLQQFREIYGQSPDVDRLKLSAVHRSDPSKRILVIFCGTGSV
Subjt: MEEDGFEGEPNRVELGTCLSSYIDNGSTESHRYFLSRRTVLEMLRDRGYTPTTSDADLTLQQFREIYGQSPDVDRLKLSAVHRSDPSKRILVIFCGTGSV
Query: KVNAIRNIAGQIVNKDTLHGLILIVQNQITNQAMKAVDLFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYY
KVNAIRNIAGQIVNKDTLHGLILIVQNQITNQAMKAVDLFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYY
Subjt: KVNAIRNIAGQIVNKDTLHGLILIVQNQITNQAMKAVDLFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYY
Query: GLEKGQVVKVTYDGDMTMSHVTYRCVW
GLEKGQVVKVTYDGDMTMSHVTYRCVW
Subjt: GLEKGQVVKVTYDGDMTMSHVTYRCVW
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| XP_022950955.1 DNA-directed RNA polymerase V subunit 5A isoform X2 [Cucurbita moschata] | 3.0e-111 | 91.19 | Show/hide |
Query: MEEDGFEGEPNRVELGTCLSSYIDNGSTESHRYFLSRRTVLEMLRDRGYTPTTSDADLTLQQFREIYGQSPDVDRLKLSAVHRSDPSKRILVIFCGTGSV
MEEDGF GEPNRVELGTCLSSYID+G+TESHRY+LSRRTVLEMLRDRGYT SD DLTLQQFREIYGQ DVDRLKLSA HR+DPSKRILVIFCGTG+V
Subjt: MEEDGFEGEPNRVELGTCLSSYIDNGSTESHRYFLSRRTVLEMLRDRGYTPTTSDADLTLQQFREIYGQSPDVDRLKLSAVHRSDPSKRILVIFCGTGSV
Query: KVNAIRNIAGQIVNKDTLHGLILIVQNQITNQAMKAVDLFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYY
KV+AIRNIAGQIVNK+TLHGLILIVQNQITNQAMKAV++FSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLL+QYSIEEKQLPRMLRTDAIARYY
Subjt: KVNAIRNIAGQIVNKDTLHGLILIVQNQITNQAMKAVDLFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYY
Query: GLEKGQVVKVTYDGDMTMSHVTYRCVW
GLEKGQ+VKVTYDGDMT SHVTYRCVW
Subjt: GLEKGQVVKVTYDGDMTMSHVTYRCVW
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| XP_022971518.1 DNA-directed RNA polymerase V subunit 5A isoform X2 [Cucurbita maxima] | 1.8e-111 | 91.19 | Show/hide |
Query: MEEDGFEGEPNRVELGTCLSSYIDNGSTESHRYFLSRRTVLEMLRDRGYTPTTSDADLTLQQFREIYGQSPDVDRLKLSAVHRSDPSKRILVIFCGTGSV
MEEDGF GEPNRVELGTCLSSYID+G+TESHRY+LSRRTVLEMLRDRGYT SD DLTLQQFREIYGQ PDVDRLKLSA HR+DPSKRILVIFCGTG+V
Subjt: MEEDGFEGEPNRVELGTCLSSYIDNGSTESHRYFLSRRTVLEMLRDRGYTPTTSDADLTLQQFREIYGQSPDVDRLKLSAVHRSDPSKRILVIFCGTGSV
Query: KVNAIRNIAGQIVNKDTLHGLILIVQNQITNQAMKAVDLFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYY
KV+AIRNIAGQIVNK+TLHGLILIVQNQITNQAMKAV++FSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLL+QYSIEEKQLPRMLRTDAIARYY
Subjt: KVNAIRNIAGQIVNKDTLHGLILIVQNQITNQAMKAVDLFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYY
Query: GLEKGQVVKVTYDGDMTMSHVTYRCVW
LEKGQ+VKVTYDGDMT SHVTYRCVW
Subjt: GLEKGQVVKVTYDGDMTMSHVTYRCVW
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| XP_023539155.1 DNA-directed RNA polymerase V subunit 5A [Cucurbita pepo subsp. pepo] | 1.4e-111 | 91.19 | Show/hide |
Query: MEEDGFEGEPNRVELGTCLSSYIDNGSTESHRYFLSRRTVLEMLRDRGYTPTTSDADLTLQQFREIYGQSPDVDRLKLSAVHRSDPSKRILVIFCGTGSV
MEEDGF GEPNRVELGTCLSSYID+G+TESHRY+LSRRTVLEMLRDRGYT SD DLTLQQFREIYGQ PDVDRLKLSA H +DPSKRILVIFCGTG+V
Subjt: MEEDGFEGEPNRVELGTCLSSYIDNGSTESHRYFLSRRTVLEMLRDRGYTPTTSDADLTLQQFREIYGQSPDVDRLKLSAVHRSDPSKRILVIFCGTGSV
Query: KVNAIRNIAGQIVNKDTLHGLILIVQNQITNQAMKAVDLFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYY
KV+AIRNIAGQIVNK+TLHGLILIVQNQITNQAMKAV++FSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLL+QYSIEEKQLPRMLRTDAIARYY
Subjt: KVNAIRNIAGQIVNKDTLHGLILIVQNQITNQAMKAVDLFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYY
Query: GLEKGQVVKVTYDGDMTMSHVTYRCVW
GLEKGQ+VKVTYDGDMT SHVTYRCVW
Subjt: GLEKGQVVKVTYDGDMTMSHVTYRCVW
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| XP_038903402.1 DNA-directed RNA polymerase V subunit 5A [Benincasa hispida] | 1.1e-113 | 92.07 | Show/hide |
Query: MEEDGFEGEPNRVELGTCLSSYIDNGSTESHRYFLSRRTVLEMLRDRGYTPTTSDADLTLQQFREIYGQSPDVDRLKLSAVHRSDPSKRILVIFCGTGSV
MEEDGFEGEPN VE GTCLSSYIDNG+TESHRYFLSRRTVLEMLRDRGYT +SD DL+LQQFREIYGQSPDVDRLKLSAVHRSDPSKR+LVIFCGTG+V
Subjt: MEEDGFEGEPNRVELGTCLSSYIDNGSTESHRYFLSRRTVLEMLRDRGYTPTTSDADLTLQQFREIYGQSPDVDRLKLSAVHRSDPSKRILVIFCGTGSV
Query: KVNAIRNIAGQIVNKDTLHGLILIVQNQITNQAMKAVDLFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYY
KVNAIRNIAGQI NKD+LHGLILIVQNQITNQAMKAV+LFSFKVEIFQITDLLVNITKHALKPNHQVL+EEEKQKLL+QYSIEEKQLPRMLR DA+ARYY
Subjt: KVNAIRNIAGQIVNKDTLHGLILIVQNQITNQAMKAVDLFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYY
Query: GLEKGQVVKVTYDGDMTMSHVTYRCVW
GLEKGQVVKVTYDGDMT SHVTYRCVW
Subjt: GLEKGQVVKVTYDGDMTMSHVTYRCVW
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| TrEMBL top hits | e value | %identity | Alignment |
|---|
| A0A0A0LCG9 Uncharacterized protein | 1.5e-108 | 87.22 | Show/hide |
Query: MEEDGFEGEPNRVELGTCLSSYIDNGSTESHRYFLSRRTVLEMLRDRGYTPTTSDADLTLQQFREIYGQSPDVDRLKLSAVHRSDPSKRILVIFCGTGSV
MEEDGFE EPN VE GTCLSSYID+G+TESHRYFLSRRTV+EML+DRGYT + + D +LQQFRE +GQ PDVDRLKLSA H SDPSKR+LV+FCGTG+V
Subjt: MEEDGFEGEPNRVELGTCLSSYIDNGSTESHRYFLSRRTVLEMLRDRGYTPTTSDADLTLQQFREIYGQSPDVDRLKLSAVHRSDPSKRILVIFCGTGSV
Query: KVNAIRNIAGQIVNKDTLHGLILIVQNQITNQAMKAVDLFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYY
KVNAIRNIAGQI NKD+LHGLILIVQNQITNQAMKAV+LFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYY
Subjt: KVNAIRNIAGQIVNKDTLHGLILIVQNQITNQAMKAVDLFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYY
Query: GLEKGQVVKVTYDGDMTMSHVTYRCVW
GLEKGQVVKVTYDGDMT +H+TYRCVW
Subjt: GLEKGQVVKVTYDGDMTMSHVTYRCVW
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| A0A1S3B7M5 DNA-directed RNA polymerase V subunit 5A | 3.0e-109 | 88.11 | Show/hide |
Query: MEEDGFEGEPNRVELGTCLSSYIDNGSTESHRYFLSRRTVLEMLRDRGYTPTTSDADLTLQQFREIYGQSPDVDRLKLSAVHRSDPSKRILVIFCGTGSV
MEEDGFE EPN VE GTCLSSYID+G+TESHRYFLSRRTV+EML+DRGYT + D DL+LQQFR+I+GQ PDVDRLKL A H SDPSKR+LV+FCGTG+V
Subjt: MEEDGFEGEPNRVELGTCLSSYIDNGSTESHRYFLSRRTVLEMLRDRGYTPTTSDADLTLQQFREIYGQSPDVDRLKLSAVHRSDPSKRILVIFCGTGSV
Query: KVNAIRNIAGQIVNKDTLHGLILIVQNQITNQAMKAVDLFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYY
KVNAIRNIAGQI NKD+LHGLILIVQNQITNQAMKAV+LFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYY
Subjt: KVNAIRNIAGQIVNKDTLHGLILIVQNQITNQAMKAVDLFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYY
Query: GLEKGQVVKVTYDGDMTMSHVTYRCVW
GLEKGQVVKVTYDGDMT +HVTYRCVW
Subjt: GLEKGQVVKVTYDGDMTMSHVTYRCVW
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| A0A6J1E191 DNA-directed RNA polymerase V subunit 5A | 2.4e-122 | 99.56 | Show/hide |
Query: MEEDGFEGEPNRVELGTCLSSYIDNGSTESHRYFLSRRTVLEMLRDRGYTPTTSDADLTLQQFREIYGQSPDVDRLKLSAVHRSDPSKRILVIFCGTGSV
MEEDGFEGEPNRVELGTCLSSYIDNGSTESHRYFL RRTVLEMLRDRGYTPTTSDADLTLQQFREIYGQSPDVDRLKLSAVHRSDPSKRILVIFCGTGSV
Subjt: MEEDGFEGEPNRVELGTCLSSYIDNGSTESHRYFLSRRTVLEMLRDRGYTPTTSDADLTLQQFREIYGQSPDVDRLKLSAVHRSDPSKRILVIFCGTGSV
Query: KVNAIRNIAGQIVNKDTLHGLILIVQNQITNQAMKAVDLFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYY
KVNAIRNIAGQIVNKDTLHGLILIVQNQITNQAMKAVDLFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYY
Subjt: KVNAIRNIAGQIVNKDTLHGLILIVQNQITNQAMKAVDLFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYY
Query: GLEKGQVVKVTYDGDMTMSHVTYRCVW
GLEKGQVVKVTYDGDMTMSHVTYRCVW
Subjt: GLEKGQVVKVTYDGDMTMSHVTYRCVW
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| A0A6J1GH86 DNA-directed RNA polymerase V subunit 5A isoform X2 | 1.5e-111 | 91.19 | Show/hide |
Query: MEEDGFEGEPNRVELGTCLSSYIDNGSTESHRYFLSRRTVLEMLRDRGYTPTTSDADLTLQQFREIYGQSPDVDRLKLSAVHRSDPSKRILVIFCGTGSV
MEEDGF GEPNRVELGTCLSSYID+G+TESHRY+LSRRTVLEMLRDRGYT SD DLTLQQFREIYGQ DVDRLKLSA HR+DPSKRILVIFCGTG+V
Subjt: MEEDGFEGEPNRVELGTCLSSYIDNGSTESHRYFLSRRTVLEMLRDRGYTPTTSDADLTLQQFREIYGQSPDVDRLKLSAVHRSDPSKRILVIFCGTGSV
Query: KVNAIRNIAGQIVNKDTLHGLILIVQNQITNQAMKAVDLFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYY
KV+AIRNIAGQIVNK+TLHGLILIVQNQITNQAMKAV++FSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLL+QYSIEEKQLPRMLRTDAIARYY
Subjt: KVNAIRNIAGQIVNKDTLHGLILIVQNQITNQAMKAVDLFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYY
Query: GLEKGQVVKVTYDGDMTMSHVTYRCVW
GLEKGQ+VKVTYDGDMT SHVTYRCVW
Subjt: GLEKGQVVKVTYDGDMTMSHVTYRCVW
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| A0A6J1I733 DNA-directed RNA polymerase V subunit 5A isoform X2 | 8.5e-112 | 91.19 | Show/hide |
Query: MEEDGFEGEPNRVELGTCLSSYIDNGSTESHRYFLSRRTVLEMLRDRGYTPTTSDADLTLQQFREIYGQSPDVDRLKLSAVHRSDPSKRILVIFCGTGSV
MEEDGF GEPNRVELGTCLSSYID+G+TESHRY+LSRRTVLEMLRDRGYT SD DLTLQQFREIYGQ PDVDRLKLSA HR+DPSKRILVIFCGTG+V
Subjt: MEEDGFEGEPNRVELGTCLSSYIDNGSTESHRYFLSRRTVLEMLRDRGYTPTTSDADLTLQQFREIYGQSPDVDRLKLSAVHRSDPSKRILVIFCGTGSV
Query: KVNAIRNIAGQIVNKDTLHGLILIVQNQITNQAMKAVDLFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYY
KV+AIRNIAGQIVNK+TLHGLILIVQNQITNQAMKAV++FSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLL+QYSIEEKQLPRMLRTDAIARYY
Subjt: KVNAIRNIAGQIVNKDTLHGLILIVQNQITNQAMKAVDLFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYY
Query: GLEKGQVVKVTYDGDMTMSHVTYRCVW
LEKGQ+VKVTYDGDMT SHVTYRCVW
Subjt: GLEKGQVVKVTYDGDMTMSHVTYRCVW
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| SwissProt top hits | e value | %identity | Alignment |
|---|
| A8XGH1 DNA-directed RNA polymerases I, II, and III subunit RPABC1 | 9.6e-28 | 33.66 | Show/hide |
Query: ESHRYFLSRRTVLEMLRDRGYTPTTSDADLTLQQFREIYGQSPDVDR-----LKLSAVHRSDPSKRILVIFCGTGSVKVNAIRNIAGQIVNKDTLHGLIL
E++R + R+TVL+M+ DRGY + D L+ F+E +G P + L + H DP+ ++ V F + + I+ I Q + + + I+
Subjt: ESHRYFLSRRTVLEMLRDRGYTPTTSDADLTLQQFREIYGQSPDVDR-----LKLSAVHRSDPSKRILVIFCGTGSVKVNAIRNIAGQIVNKDTLHGLIL
Query: IVQNQITNQAMKAVDLFS--FKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYYGLEKGQVVKVTYDGDMTMSHV
+VQ +T A +++ + + +E F +L+VNIT+H L P H V+T EEK +LL +Y +++ QLPR+ + D +ARY+GL +GQVVK+ + ++
Subjt: IVQNQITNQAMKAVDLFS--FKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYYGLEKGQVVKVTYDGDMTMSHV
Query: TYRCV
TYR V
Subjt: TYRCV
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| O81098 DNA-directed RNA polymerases II and IV subunit 5A | 3.9e-29 | 37.5 | Show/hide |
Query: ESHRYFLSRRTVLEMLRDRGYTPTTSDADLTLQQFREIYGQSPDVDRLKLSAVHRSDPSKRILVIFCGTGSVKVNAIRNIAGQIVNKDTLHGLILIVQNQ
E R + ++T+++MLRDRGY S+ +T QQF +G + + L R+D S ++ + F V V ++ ++ +++ IL+VQ
Subjt: ESHRYFLSRRTVLEMLRDRGYTPTTSDADLTLQQFREIYGQSPDVDRLKLSAVHRSDPSKRILVIFCGTGSVKVNAIRNIAGQIVNKDTLHGLILIVQNQ
Query: ITNQAMKAVDLFS--FKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYYGLEKGQVVKVTYDGDMTMSHVTYRCV
+T A + S F +E+FQ ++LVNI +H L P HQVLT EEK+ LL++Y+++E QLPR+ TD IARY+GL++GQVVK+ + +VTYR V
Subjt: ITNQAMKAVDLFS--FKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYYGLEKGQVVKVTYDGDMTMSHVTYRCV
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| Q9M1H8 DNA-directed RNA polymerase V subunit 5C | 3.1e-50 | 44.69 | Show/hide |
Query: EEDGFEGEPNRVELGT-CLSSYIDNGSTESHRYFLSRRTVLEMLRDRGYTPTTSDADLTLQQFREIYGQSPDVDRLKLSAVHRSDPSKRILVIFCGTGSV
EE E + + GT C+S D G ES R++L+R T EMLRDRGY ++ LTL +FR ++G+ P+++RL++ RSDP K+ILV+F GT +
Subjt: EEDGFEGEPNRVELGT-CLSSYIDNGSTESHRYFLSRRTVLEMLRDRGYTPTTSDADLTLQQFREIYGQSPDVDRLKLSAVHRSDPSKRILVIFCGTGSV
Query: KVNAIRNIAGQIVNKDTLHGLILIVQNQITNQAMKAVDLFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYY
V ++R + QI N LH +IL++Q+++ + A KA+ F F VE F I DLLVNITKH +P ++L +EEK++LL+++++E+KQLP + D+ RYY
Subjt: KVNAIRNIAGQIVNKDTLHGLILIVQNQITNQAMKAVDLFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYY
Query: GLEKGQVVKVTYDGDMTMSHVTYRCV
GL+K QVVK+TY + VTYRC+
Subjt: GLEKGQVVKVTYDGDMTMSHVTYRCV
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| Q9M1J2 DNA-directed RNA polymerase V subunit 5A | 1.5e-76 | 64.29 | Show/hide |
Query: CLSSYIDNGSTESHRYFLSRRTVLEMLRDRGYTPTTSDADLTLQQFREIYGQSPDVDRLKLSAVHRSDPSKRILVIFCGTGSVKVNAIRNIAGQIVNKDT
CLS Y+D S ESHRY+L+RR L+MLRDRGY + D +L+L FR +YG+ PDVDRL++SA+HRSD +K++ ++F GT VKVNAIR++ I++++T
Subjt: CLSSYIDNGSTESHRYFLSRRTVLEMLRDRGYTPTTSDADLTLQQFREIYGQSPDVDRLKLSAVHRSDPSKRILVIFCGTGSVKVNAIRNIAGQIVNKDT
Query: LHGLILIVQNQITNQAMKAVDLFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYYGLEKGQVVKVTYDGDMT
+ GLIL++QN +TNQA+KA++LFSFKVEIFQITDLLVNITKH+LKP HQVL +EEK LLK++SIEEKQLPR+ + DAI RYYGLEKGQVVKV Y G++T
Subjt: LHGLILIVQNQITNQAMKAVDLFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYYGLEKGQVVKVTYDGDMT
Query: MSHVTYRCVW
SHV +RCVW
Subjt: MSHVTYRCVW
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| Q9ZVB9 DNA-directed RNA polymerases IV and V subunit 5B | 3.5e-70 | 58.64 | Show/hide |
Query: EGEPNRVELGTCLSSYIDNGSTESHRYFLSRRTVLEMLRDRGYTPTTSDADLTLQQFREIYGQSPDVDRLKLSAVHRSDPSKRILVIFCGTGSVKVNAIR
EG+ + +G +S S E H+Y+L+RRT +EMLRDRGY + D +L+LQQFR +YG+ PDVD L++SA HR D SK+I V+FCGTG VKVNA+R
Subjt: EGEPNRVELGTCLSSYIDNGSTESHRYFLSRRTVLEMLRDRGYTPTTSDADLTLQQFREIYGQSPDVDRLKLSAVHRSDPSKRILVIFCGTGSVKVNAIR
Query: NIAGQIVNKDTLHGLILIVQNQITNQAMKAVDLFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYYGLEKGQ
IA +++++ + GLIL++Q+ ITNQA+KAV+LFSFKVE+F+ITDLLVN++KH L+P HQVL ++EK+ LLK++SIEEKQLPR+ D I RYYGLE GQ
Subjt: NIAGQIVNKDTLHGLILIVQNQITNQAMKAVDLFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYYGLEKGQ
Query: VVKVTYDGDMTMSHVTYRCV
V+KVTY +++ SHVTYRCV
Subjt: VVKVTYDGDMTMSHVTYRCV
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| Arabidopsis top hits | e value | %identity | Alignment |
|---|
| AT2G41340.1 RNA polymerase II fifth largest subunit, D | 2.5e-71 | 58.64 | Show/hide |
Query: EGEPNRVELGTCLSSYIDNGSTESHRYFLSRRTVLEMLRDRGYTPTTSDADLTLQQFREIYGQSPDVDRLKLSAVHRSDPSKRILVIFCGTGSVKVNAIR
EG+ + +G +S S E H+Y+L+RRT +EMLRDRGY + D +L+LQQFR +YG+ PDVD L++SA HR D SK+I V+FCGTG VKVNA+R
Subjt: EGEPNRVELGTCLSSYIDNGSTESHRYFLSRRTVLEMLRDRGYTPTTSDADLTLQQFREIYGQSPDVDRLKLSAVHRSDPSKRILVIFCGTGSVKVNAIR
Query: NIAGQIVNKDTLHGLILIVQNQITNQAMKAVDLFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYYGLEKGQ
IA +++++ + GLIL++Q+ ITNQA+KAV+LFSFKVE+F+ITDLLVN++KH L+P HQVL ++EK+ LLK++SIEEKQLPR+ D I RYYGLE GQ
Subjt: NIAGQIVNKDTLHGLILIVQNQITNQAMKAVDLFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYYGLEKGQ
Query: VVKVTYDGDMTMSHVTYRCV
V+KVTY +++ SHVTYRCV
Subjt: VVKVTYDGDMTMSHVTYRCV
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| AT3G22320.1 Eukaryotic rpb5 RNA polymerase subunit family protein | 2.8e-30 | 37.5 | Show/hide |
Query: ESHRYFLSRRTVLEMLRDRGYTPTTSDADLTLQQFREIYGQSPDVDRLKLSAVHRSDPSKRILVIFCGTGSVKVNAIRNIAGQIVNKDTLHGLILIVQNQ
E R + ++T+++MLRDRGY S+ +T QQF +G + + L R+D S ++ + F V V ++ ++ +++ IL+VQ
Subjt: ESHRYFLSRRTVLEMLRDRGYTPTTSDADLTLQQFREIYGQSPDVDRLKLSAVHRSDPSKRILVIFCGTGSVKVNAIRNIAGQIVNKDTLHGLILIVQNQ
Query: ITNQAMKAVDLFS--FKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYYGLEKGQVVKVTYDGDMTMSHVTYRCV
+T A + S F +E+FQ ++LVNI +H L P HQVLT EEK+ LL++Y+++E QLPR+ TD IARY+GL++GQVVK+ + +VTYR V
Subjt: ITNQAMKAVDLFS--FKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYYGLEKGQVVKVTYDGDMTMSHVTYRCV
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| AT3G54490.1 RNA polymerase II fifth largest subunit, E | 2.2e-51 | 44.69 | Show/hide |
Query: EEDGFEGEPNRVELGT-CLSSYIDNGSTESHRYFLSRRTVLEMLRDRGYTPTTSDADLTLQQFREIYGQSPDVDRLKLSAVHRSDPSKRILVIFCGTGSV
EE E + + GT C+S D G ES R++L+R T EMLRDRGY ++ LTL +FR ++G+ P+++RL++ RSDP K+ILV+F GT +
Subjt: EEDGFEGEPNRVELGT-CLSSYIDNGSTESHRYFLSRRTVLEMLRDRGYTPTTSDADLTLQQFREIYGQSPDVDRLKLSAVHRSDPSKRILVIFCGTGSV
Query: KVNAIRNIAGQIVNKDTLHGLILIVQNQITNQAMKAVDLFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYY
V ++R + QI N LH +IL++Q+++ + A KA+ F F VE F I DLLVNITKH +P ++L +EEK++LL+++++E+KQLP + D+ RYY
Subjt: KVNAIRNIAGQIVNKDTLHGLILIVQNQITNQAMKAVDLFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYY
Query: GLEKGQVVKVTYDGDMTMSHVTYRCV
GL+K QVVK+TY + VTYRC+
Subjt: GLEKGQVVKVTYDGDMTMSHVTYRCV
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| AT3G57080.1 Eukaryotic rpb5 RNA polymerase subunit family protein | 1.0e-77 | 64.29 | Show/hide |
Query: CLSSYIDNGSTESHRYFLSRRTVLEMLRDRGYTPTTSDADLTLQQFREIYGQSPDVDRLKLSAVHRSDPSKRILVIFCGTGSVKVNAIRNIAGQIVNKDT
CLS Y+D S ESHRY+L+RR L+MLRDRGY + D +L+L FR +YG+ PDVDRL++SA+HRSD +K++ ++F GT VKVNAIR++ I++++T
Subjt: CLSSYIDNGSTESHRYFLSRRTVLEMLRDRGYTPTTSDADLTLQQFREIYGQSPDVDRLKLSAVHRSDPSKRILVIFCGTGSVKVNAIRNIAGQIVNKDT
Query: LHGLILIVQNQITNQAMKAVDLFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYYGLEKGQVVKVTYDGDMT
+ GLIL++QN +TNQA+KA++LFSFKVEIFQITDLLVNITKH+LKP HQVL +EEK LLK++SIEEKQLPR+ + DAI RYYGLEKGQVVKV Y G++T
Subjt: LHGLILIVQNQITNQAMKAVDLFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYYGLEKGQVVKVTYDGDMT
Query: MSHVTYRCVW
SHV +RCVW
Subjt: MSHVTYRCVW
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| AT5G57980.1 RNA polymerase II fifth largest subunit, C | 8.4e-27 | 36.82 | Show/hide |
Query: ESHRYFLSRRTVLEMLRDRGYTPTTSDADLTLQQFREIYGQS---PDVDRLKLSAVHRSDPSKRILVIFCGTGSVKVNAIRNIAGQIVNKDTLHGLILIV
E R F RRTVL+MLRDRGYT SD +L ++F + + ++ + + L +SA +P+ +I V + V V I+ + D +H I++V
Subjt: ESHRYFLSRRTVLEMLRDRGYTPTTSDADLTLQQFREIYGQS---PDVDRLKLSAVHRSDPSKRILVIFCGTGSVKVNAIRNIAGQIVNKDTLHGLILIV
Query: QNQITNQAMKAVDLFS--FKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYYGLEKGQVVKVTYDGDMTMSHVTY
IT A AV + +E+F+ +L+ NIT+H L + VL ++ K+KLL Y++++ QLPR+L TD +ARYYGL++GQVVK+ ++ + TY
Subjt: QNQITNQAMKAVDLFS--FKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYYGLEKGQVVKVTYDGDMTMSHVTY
Query: R
R
Subjt: R
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