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MS023808 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS023808
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionLINE-1 reverse transcriptase like
Genome locationscaffold207:685225..685515
RNA-Seq ExpressionMS023808
SyntenyMS023808
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0056660.1 GTP-binding protein [Cucumis melo var. makuwa]3.4e-1145.45Show/hide
Query:  DNLRVSKLERLVSDNFTILLTSRSFEWGPTPFRFYNSWLQVPECVKFIEEKLSNDVSNGWAGFVLLSKLKNLKSHLR
        DN RVS+  R+ SD+F +LL + +  WGP+ FRF NSWL + EC   IEE L +    GWAGF+L  +L  +K+ ++
Subjt:  DNLRVSKLERLVSDNFTILLTSRSFEWGPTPFRFYNSWLQVPECVKFIEEKLSNDVSNGWAGFVLLSKLKNLKSHLR

KAA0057564.1 Transposon TX1 uncharacterized [Cucumis melo var. makuwa]1.5e-1150Show/hide
Query:  RVSKLERLVSDNFTILLTSRSFEWGPTPFRFYNSWLQVPECVKFIEEKLSNDVSNGWAGFVLLSKLKNLKSHLR
        R S+ ERL SD+  ILL + +FEWGP+PFRF NSWL    C + I   L++     W GFV+ SKL++LKS L+
Subjt:  RVSKLERLVSDNFTILLTSRSFEWGPTPFRFYNSWLQVPECVKFIEEKLSNDVSNGWAGFVLLSKLKNLKSHLR

XP_038884535.1 DEAD-box ATP-dependent RNA helicase FANCM isoform X1 [Benincasa hispida]5.7e-1141.98Show/hide
Query:  DLLIDNLRVSKLERLVSDNFTILLTSRSFEWGPTPFRFYNSWLQVPECVKFIEEKLSNDVSNGWAGFVLLSKLKNLKSHLR
        D   ++ RVS+  R +SD+F +L  + +FEWGP+PFRF NSWL+  EC + IE          WAGF L S+L+ +K  ++
Subjt:  DLLIDNLRVSKLERLVSDNFTILLTSRSFEWGPTPFRFYNSWLQVPECVKFIEEKLSNDVSNGWAGFVLLSKLKNLKSHLR

XP_038884536.1 DEAD-box ATP-dependent RNA helicase FANCM isoform X2 [Benincasa hispida]5.7e-1141.98Show/hide
Query:  DLLIDNLRVSKLERLVSDNFTILLTSRSFEWGPTPFRFYNSWLQVPECVKFIEEKLSNDVSNGWAGFVLLSKLKNLKSHLR
        D   ++ RVS+  R +SD+F +L  + +FEWGP+PFRF NSWL+  EC + IE          WAGF L S+L+ +K  ++
Subjt:  DLLIDNLRVSKLERLVSDNFTILLTSRSFEWGPTPFRFYNSWLQVPECVKFIEEKLSNDVSNGWAGFVLLSKLKNLKSHLR

XP_038884537.1 DEAD-box ATP-dependent RNA helicase FANCM isoform X3 [Benincasa hispida]5.7e-1141.98Show/hide
Query:  DLLIDNLRVSKLERLVSDNFTILLTSRSFEWGPTPFRFYNSWLQVPECVKFIEEKLSNDVSNGWAGFVLLSKLKNLKSHLR
        D   ++ RVS+  R +SD+F +L  + +FEWGP+PFRF NSWL+  EC + IE          WAGF L S+L+ +K  ++
Subjt:  DLLIDNLRVSKLERLVSDNFTILLTSRSFEWGPTPFRFYNSWLQVPECVKFIEEKLSNDVSNGWAGFVLLSKLKNLKSHLR

TrEMBL top hitse value%identityAlignment
A0A392LXM5 LINE-1 reverse transcriptase like1.2e-0939.73Show/hide
Query:  VSKLERLVSDNFTILLTSRSFEWGPTPFRFYNSWLQVPECVKFIEEKLSNDVSNGWAGFVLLSKLKNLKSHLR
        +S+++R +SD+  ++L    ++WGP PFRF N W++     K ++E   N   NGW GFVL  KLK +K+ L+
Subjt:  VSKLERLVSDNFTILLTSRSFEWGPTPFRFYNSWLQVPECVKFIEEKLSNDVSNGWAGFVLLSKLKNLKSHLR

A0A392LZD7 LINE-1 reverse transcriptase like (Fragment)5.2e-1047.14Show/hide
Query:  LERLVSDNFTILLTSRSFEWGPTPFRFYNSWLQVPECVKFIEEKLSNDVSNGWAGFVLLSKLKNLKSHLR
        L R +SD+  ++L   +F+WGP PFRF N W+Q     K +EE   N   NGW GFVL  KLK LK  L+
Subjt:  LERLVSDNFTILLTSRSFEWGPTPFRFYNSWLQVPECVKFIEEKLSNDVSNGWAGFVLLSKLKNLKSHLR

A0A392M447 Cysteine-rich receptor-like protein kinase (Fragment)2.6e-0945.71Show/hide
Query:  LERLVSDNFTILLTSRSFEWGPTPFRFYNSWLQVPECVKFIEEKLSNDVSNGWAGFVLLSKLKNLKSHLR
        L R +SD+  ++L    F+WGP PFRF N W+      K +EE   N   NGW GFVL  KLK LK  L+
Subjt:  LERLVSDNFTILLTSRSFEWGPTPFRFYNSWLQVPECVKFIEEKLSNDVSNGWAGFVLLSKLKNLKSHLR

A0A5A7UNL3 GTP-binding protein1.6e-1145.45Show/hide
Query:  DNLRVSKLERLVSDNFTILLTSRSFEWGPTPFRFYNSWLQVPECVKFIEEKLSNDVSNGWAGFVLLSKLKNLKSHLR
        DN RVS+  R+ SD+F +LL + +  WGP+ FRF NSWL + EC   IEE L +    GWAGF+L  +L  +K+ ++
Subjt:  DNLRVSKLERLVSDNFTILLTSRSFEWGPTPFRFYNSWLQVPECVKFIEEKLSNDVSNGWAGFVLLSKLKNLKSHLR

A0A5A7UR38 Transposon TX1 uncharacterized7.3e-1250Show/hide
Query:  RVSKLERLVSDNFTILLTSRSFEWGPTPFRFYNSWLQVPECVKFIEEKLSNDVSNGWAGFVLLSKLKNLKSHLR
        R S+ ERL SD+  ILL + +FEWGP+PFRF NSWL    C + I   L++     W GFV+ SKL++LKS L+
Subjt:  RVSKLERLVSDNFTILLTSRSFEWGPTPFRFYNSWLQVPECVKFIEEKLSNDVSNGWAGFVLLSKLKNLKSHLR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GTCCTACCCAAACTCCACTTGATTGTCTTTTTGTCTCAAAGGATTGGGGATTTGCTAATTGATAATTTGAGAGTTTCCAAATTGGAAAGACTAGTGTCGGATAACTTTAC
AATTCTTCTAACGTCCAGAAGCTTTGAATGGGGACCCACACCTTTTCGTTTCTACAATTCTTGGCTTCAAGTTCCTGAATGTGTAAAGTTTATTGAAGAGAAACTATCCA
ATGATGTATCAAATGGTTGGGCTGGATTTGTTTTATTATCCAAACTTAAAAATTTGAAGAGTCATCTGAGA
mRNA sequenceShow/hide mRNA sequence
GTCCTACCCAAACTCCACTTGATTGTCTTTTTGTCTCAAAGGATTGGGGATTTGCTAATTGATAATTTGAGAGTTTCCAAATTGGAAAGACTAGTGTCGGATAACTTTAC
AATTCTTCTAACGTCCAGAAGCTTTGAATGGGGACCCACACCTTTTCGTTTCTACAATTCTTGGCTTCAAGTTCCTGAATGTGTAAAGTTTATTGAAGAGAAACTATCCA
ATGATGTATCAAATGGTTGGGCTGGATTTGTTTTATTATCCAAACTTAAAAATTTGAAGAGTCATCTGAGA
Protein sequenceShow/hide protein sequence
VLPKLHLIVFLSQRIGDLLIDNLRVSKLERLVSDNFTILLTSRSFEWGPTPFRFYNSWLQVPECVKFIEEKLSNDVSNGWAGFVLLSKLKNLKSHLR