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MS023816 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS023816
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionpentatricopeptide repeat-containing protein At1g71210
Genome locationscaffold207:924600..924823
RNA-Seq ExpressionMS023816
SyntenyMS023816
Gene Ontology termsGO:0005515 - protein binding (molecular function)
InterPro domainsIPR011990 - Tetratricopeptide-like helical domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAN76479.1 hypothetical protein VITISV_028175 [Vitis vinifera]6.7e-2068.83Show/hide
Query:  KVGMVDVALDLYNSRPEFGLSPPNSMA---LINTLCGDGSIDKAYHILKNFIDQGYFLEEKIFSIFTNALCQDGSTD
        K GMVDVAL+LYNSR EFGLS PNSMA   LINTLCGDGS D+AYH+LK+ ++QGYF  +K FSI  +ALCQ+G  D
Subjt:  KVGMVDVALDLYNSRPEFGLSPPNSMA---LINTLCGDGSIDKAYHILKNFIDQGYFLEEKIFSIFTNALCQDGSTD
KAG7030102.1 Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma]1.5e-1968.83Show/hide
Query:  KVGMVDVALDLYNSRPEFGLSPPNSMA---LINTLCGDGSIDKAYHILKNFIDQGYFLEEKIFSIFTNALCQDGSTD
        K GMVDVALDLYNSR E+ LS PNSMA   L+NTLCGDGS D+AYHILK+ IDQGYF  +K FSI  +ALC++G  D
Subjt:  KVGMVDVALDLYNSRPEFGLSPPNSMA---LINTLCGDGSIDKAYHILKNFIDQGYFLEEKIFSIFTNALCQDGSTD
XP_002269136.1 PREDICTED: pentatricopeptide repeat-containing protein At1g71210 [Vitis vinifera]6.7e-2068.83Show/hide
Query:  KVGMVDVALDLYNSRPEFGLSPPNSMA---LINTLCGDGSIDKAYHILKNFIDQGYFLEEKIFSIFTNALCQDGSTD
        K GMVDVAL+LYNSR EFGLS PNSMA   LINTLCGDGS D+AYH+LK+ ++QGYF  +K FSI  +ALCQ+G  D
Subjt:  KVGMVDVALDLYNSRPEFGLSPPNSMA---LINTLCGDGSIDKAYHILKNFIDQGYFLEEKIFSIFTNALCQDGSTD
XP_022156362.1 pentatricopeptide repeat-containing protein At1g71210 [Momordica charantia]1.5e-1971.43Show/hide
Query:  KVGMVDVALDLYNSRPEFGLSPPNSMA---LINTLCGDGSIDKAYHILKNFIDQGYFLEEKIFSIFTNALCQDGSTD
        K GMVDVALDLYNSR  FGLS PNSMA   LINTLCGDGS D+AYHILKN IDQGYF  +K FSI  +ALC++   D
Subjt:  KVGMVDVALDLYNSRPEFGLSPPNSMA---LINTLCGDGSIDKAYHILKNFIDQGYFLEEKIFSIFTNALCQDGSTD
XP_042479000.1 pentatricopeptide repeat-containing protein At1g71210, mitochondrial-like [Macadamia integrifolia]4.0e-2070.13Show/hide
Query:  KVGMVDVALDLYNSRPEFGLSPPNSMA---LINTLCGDGSIDKAYHILKNFIDQGYFLEEKIFSIFTNALCQDGSTD
        K GMVDVALDLYNSR EFGLS PNSMA   LINTLCGDGS+D+AY +LKN I+QGYF   K FSI  +ALC++G  D
Subjt:  KVGMVDVALDLYNSRPEFGLSPPNSMA---LINTLCGDGSIDKAYHILKNFIDQGYFLEEKIFSIFTNALCQDGSTD
TrEMBL top hitse value%identityAlignment
A0A2N9GYN2 Uncharacterized protein1.2e-1968.83Show/hide
Query:  KVGMVDVALDLYNSRPEFGLSPPNSMA---LINTLCGDGSIDKAYHILKNFIDQGYFLEEKIFSIFTNALCQDGSTD
        K GMVDVAL+LYNSR EFGLS PNSMA   LINTLCGDGS D+AY +LKN IDQGYF   ++FSI  +ALC++G  D
Subjt:  KVGMVDVALDLYNSRPEFGLSPPNSMA---LINTLCGDGSIDKAYHILKNFIDQGYFLEEKIFSIFTNALCQDGSTD
A0A6J1DT81 pentatricopeptide repeat-containing protein At1g712107.3e-2071.43Show/hide
Query:  KVGMVDVALDLYNSRPEFGLSPPNSMA---LINTLCGDGSIDKAYHILKNFIDQGYFLEEKIFSIFTNALCQDGSTD
        K GMVDVALDLYNSR  FGLS PNSMA   LINTLCGDGS D+AYHILKN IDQGYF  +K FSI  +ALC++   D
Subjt:  KVGMVDVALDLYNSRPEFGLSPPNSMA---LINTLCGDGSIDKAYHILKNFIDQGYFLEEKIFSIFTNALCQDGSTD
A0A6J1G442 pentatricopeptide repeat-containing protein At1g71210, mitochondrial1.2e-1968.83Show/hide
Query:  KVGMVDVALDLYNSRPEFGLSPPNSMA---LINTLCGDGSIDKAYHILKNFIDQGYFLEEKIFSIFTNALCQDGSTD
        K GMVDVALDLYNSR E+ LS PNSMA   L+NTLCGDGS D+AYHILK+ IDQGYF  +K FSI  +ALC++G  D
Subjt:  KVGMVDVALDLYNSRPEFGLSPPNSMA---LINTLCGDGSIDKAYHILKNFIDQGYFLEEKIFSIFTNALCQDGSTD
A5B613 Reverse transcriptase Ty1/copia-type domain-containing protein3.3e-2068.83Show/hide
Query:  KVGMVDVALDLYNSRPEFGLSPPNSMA---LINTLCGDGSIDKAYHILKNFIDQGYFLEEKIFSIFTNALCQDGSTD
        K GMVDVAL+LYNSR EFGLS PNSMA   LINTLCGDGS D+AYH+LK+ ++QGYF  +K FSI  +ALCQ+G  D
Subjt:  KVGMVDVALDLYNSRPEFGLSPPNSMA---LINTLCGDGSIDKAYHILKNFIDQGYFLEEKIFSIFTNALCQDGSTD
F6HTM9 Uncharacterized protein3.3e-2068.83Show/hide
Query:  KVGMVDVALDLYNSRPEFGLSPPNSMA---LINTLCGDGSIDKAYHILKNFIDQGYFLEEKIFSIFTNALCQDGSTD
        K GMVDVAL+LYNSR EFGLS PNSMA   LINTLCGDGS D+AYH+LK+ ++QGYF  +K FSI  +ALCQ+G  D
Subjt:  KVGMVDVALDLYNSRPEFGLSPPNSMA---LINTLCGDGSIDKAYHILKNFIDQGYFLEEKIFSIFTNALCQDGSTD
SwissProt top hitse value%identityAlignment
Q8GZA6 Pentatricopeptide repeat-containing protein At1g71210, mitochondrial1.7e-1350Show/hide
Query:  KVGMVDVALDLYNSRPEFGLSPP--NSMALINTLCGDGSIDKAYHILKNFIDQGYFLEEKIFSIFTNALCQDGSTD
        K G VD AL+LY SR E G +P   +   LI+TLC + S+++AY +LK  ID+G+FL  K FS  TNALC  G  D
Subjt:  KVGMVDVALDLYNSRPEFGLSPP--NSMALINTLCGDGSIDKAYHILKNFIDQGYFLEEKIFSIFTNALCQDGSTD
Arabidopsis top hitse value%identityAlignment
AT1G71210.1 Pentatricopeptide repeat (PPR) superfamily protein1.2e-1450Show/hide
Query:  KVGMVDVALDLYNSRPEFGLSPP--NSMALINTLCGDGSIDKAYHILKNFIDQGYFLEEKIFSIFTNALCQDGSTD
        K G VD AL+LY SR E G +P   +   LI+TLC + S+++AY +LK  ID+G+FL  K FS  TNALC  G  D
Subjt:  KVGMVDVALDLYNSRPEFGLSPP--NSMALINTLCGDGSIDKAYHILKNFIDQGYFLEEKIFSIFTNALCQDGSTD
AT3G07290.1 Pentatricopeptide repeat (PPR) superfamily protein1.9e-0428.95Show/hide
Query:  KVGMVDVALDLYNSRPEFGLSPPNS--MALINTLCGDGSIDKAYHILKNFIDQGYFLEEKIFSIFTNALCQDGSTD
        +VG ++ A  L +   E G  P       LI  LC  G IDKA+++    I +G       +++  + LC+DG  +
Subjt:  KVGMVDVALDLYNSRPEFGLSPPNS--MALINTLCGDGSIDKAYHILKNFIDQGYFLEEKIFSIFTNALCQDGSTD

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AAAGTTGGGATGGTGGATGTTGCACTTGATTTATACAACTCCAGACCAGAATTTGGGCTTTCCCCTCCTAATAGTATGGCATTGATCAATACCTTATGTGGGGATGGAAG
CATTGATAAAGCCTATCACATCTTGAAAAATTTTATTGATCAAGGCTACTTTTTAGAAGAAAAGATATTTTCTATATTTACAAATGCATTGTGTCAAGATGGAAGCACTG
AT
mRNA sequenceShow/hide mRNA sequence
AAAGTTGGGATGGTGGATGTTGCACTTGATTTATACAACTCCAGACCAGAATTTGGGCTTTCCCCTCCTAATAGTATGGCATTGATCAATACCTTATGTGGGGATGGAAG
CATTGATAAAGCCTATCACATCTTGAAAAATTTTATTGATCAAGGCTACTTTTTAGAAGAAAAGATATTTTCTATATTTACAAATGCATTGTGTCAAGATGGAAGCACTG
AT
Protein sequenceShow/hide protein sequence
KVGMVDVALDLYNSRPEFGLSPPNSMALINTLCGDGSIDKAYHILKNFIDQGYFLEEKIFSIFTNALCQDGSTD