CuGenDBv2

Gene ID	MS023842
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	RNA polymerase II elongation factor ELL3 isoform 1
Genome location	scaffold368:126895..127557
RNA-Seq Expression	MS023842
Synteny	MS023842
Gene Ontology terms	GO:0016020 - membrane (cellular component)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG7015562.1 hypothetical protein SDJN02_23198, partial [Cucurbita argyrosperma subsp. argyrosperma]

5.8e-67

61.86

Show/hide

Query:  ANAHVVEIQIPIPAGQEDDENKKLICMAIEQHPLREISERPGHLLLLKLWQREERLLGVRMAGREARMESQKQQIFHLCCFFLLFHALALTLLFTAPEDG
        A AHVVE    IPA     EN+ ++   IEQHPLR+ISE  GHLLLLKLWQREE L G+R+  RE ++ES KQQIF LCC+F LFHAL+LTLLFT+  D 
Subjt:  ANAHVVEIQIPIPAGQEDDENKKLICMAIEQHPLREISERPGHLLLLKLWQREERLLGVRMAGREARMESQKQQIFHLCCFFLLFHALALTLLFTAPEDG

Query:  GACRRWWAAGVAVGATSAVMAVLVQARVWAYWKAAGRLQRDRDSNRALLRCVQELRMKGGSFNLNKQPIVGKRMKSSSVEIKWGPLTWCSRNLPAVSLLC
          C +WW  GVA+GATS V  ++VQ ++W YWKA+ +LQR++  NRAL RCVQELRMKG  FNL+K+P +G RMKSSSVEIKWGPLTW SRN   + LLC
Subjt:  GACRRWWAAGVAVGATSAVMAVLVQARVWAYWKAAGRLQRDRDSNRALLRCVQELRMKGGSFNLNKQPIVGKRMKSSSVEIKWGPLTWCSRNLPAVSLLC

Query:  SAGAVVAASRFLLCG
         +G V  AS+F+LCG
Subjt:  SAGAVVAASRFLLCG

XP_008449068.1 PREDICTED: uncharacterized protein LOC103491049 [Cucumis melo]

2.1e-64

58.69

Show/hide

Query:  AHVVEIQIPIPAGQEDDENKKLICMAIEQHPLREISERPGHLLLLKLWQREERLLGVRMAGREARMESQKQQIFHLCCFFLLFHALALTLLFTAPEDGGA
        AH+VEI +     ++++  + L+   I+ HPLR+ISE  GHLLLLKLWQR+E L G+R+  RE +MES KQQIF LCCFF LFHAL+LTLL+T+  D   
Subjt:  AHVVEIQIPIPAGQEDDENKKLICMAIEQHPLREISERPGHLLLLKLWQREERLLGVRMAGREARMESQKQQIFHLCCFFLLFHALALTLLFTAPEDGGA

Query:  CRRWWAAGVAVGATSAVMAVLVQARVWAYWKAAGRLQRDRDSNRALLRCVQELRMKGGSFNLNKQPIVGKRMKSSSVEIKWGPLTWCSRNLPAVSLLCSA
        C++WW   V +GATS V  ++VQ ++W YWKA G+LQR++  NRAL RC QELRMKG  FNL+K+P +G RMKSSSVEIKWGPLTW SRN  A+SLL  +
Subjt:  CRRWWAAGVAVGATSAVMAVLVQARVWAYWKAAGRLQRDRDSNRALLRCVQELRMKGGSFNLNKQPIVGKRMKSSSVEIKWGPLTWCSRNLPAVSLLCSA

Query:  GAVVAASRFLLCG
          V AAS+F+LCG
Subjt:  GAVVAASRFLLCG

XP_022932317.1 uncharacterized protein LOC111438709 [Cucurbita moschata]

1.9e-65

61.4

Show/hide

Query:  ANAHVVEIQIPIPAGQEDDENKKLICMAIEQHPLREISERPGHLLLLKLWQREERLLGVRMAGREARMESQKQQIFHLCCFFLLFHALALTLLFTAPEDG
        A AHVVE    IPA     EN+ ++   IEQHPLR+ISE  GHLLLLKLWQREE L G+R+  RE ++ES KQQIF LCC+F LFHAL+LTLLFT+  D 
Subjt:  ANAHVVEIQIPIPAGQEDDENKKLICMAIEQHPLREISERPGHLLLLKLWQREERLLGVRMAGREARMESQKQQIFHLCCFFLLFHALALTLLFTAPEDG

Query:  GACRRWWAAGVAVGATSAVMAVLVQARVWAYWKAAGRLQRDRDSNRALLRCVQELRMKGGSFNLNKQPIVGKRMKSSSVEIKWGPLTWCSRNLPAVSLLC
          C +WW  GVA+GATS V  ++VQ ++W YWKA+ +LQR++  NRAL RCVQELRMKG  FNL+K+P +G RMKSSSVEIKWGPLT  SRN   + LLC
Subjt:  GACRRWWAAGVAVGATSAVMAVLVQARVWAYWKAAGRLQRDRDSNRALLRCVQELRMKGGSFNLNKQPIVGKRMKSSSVEIKWGPLTWCSRNLPAVSLLC

Query:  SAGAVVAASRFLLCG
         +G V  AS+F+LCG
Subjt:  SAGAVVAASRFLLCG

XP_022965180.1 uncharacterized protein LOC111465114 [Cucurbita maxima]

2.4e-65

60.47

Show/hide

Query:  ANAHVVEIQIPIPAGQEDDENKKLICMAIEQHPLREISERPGHLLLLKLWQREERLLGVRMAGREARMESQKQQIFHLCCFFLLFHALALTLLFTAPEDG
        A  H+VE    IPA     EN+ ++   IEQHPLR+ISE  GHLLLLKLWQREE L G+R+  RE ++ES KQQIF LCC+F LFHAL+LTLLFT+  D 
Subjt:  ANAHVVEIQIPIPAGQEDDENKKLICMAIEQHPLREISERPGHLLLLKLWQREERLLGVRMAGREARMESQKQQIFHLCCFFLLFHALALTLLFTAPEDG

Query:  GACRRWWAAGVAVGATSAVMAVLVQARVWAYWKAAGRLQRDRDSNRALLRCVQELRMKGGSFNLNKQPIVGKRMKSSSVEIKWGPLTWCSRNLPAVSLLC
          C +WW  GVA+GATS V  ++VQ ++W YWKA+ +LQR++  NRAL R VQELRMKG  FNL+K+P +G RMKSSSVEIKWGPLTW SRN   + LLC
Subjt:  GACRRWWAAGVAVGATSAVMAVLVQARVWAYWKAAGRLQRDRDSNRALLRCVQELRMKGGSFNLNKQPIVGKRMKSSSVEIKWGPLTWCSRNLPAVSLLC

Query:  SAGAVVAASRFLLCG
         +G V  AS+F+LCG
Subjt:  SAGAVVAASRFLLCG

XP_023553388.1 uncharacterized protein LOC111810817 [Cucurbita pepo subsp. pepo]

4.4e-67

62.44

Show/hide

Query:  AHVVEIQIPIPAGQEDDENKKLICMAIEQHPLREISERPGHLLLLKLWQREERLLGVRMAGREARMESQKQQIFHLCCFFLLFHALALTLLFTAPEDGGA
        AHVVE    IPA     EN+ ++   IEQHPLR+ISE  GHLLLLKLWQREE L G+R+  RE +MES KQQIF LCC+F LFHAL+LTLLFT+  D   
Subjt:  AHVVEIQIPIPAGQEDDENKKLICMAIEQHPLREISERPGHLLLLKLWQREERLLGVRMAGREARMESQKQQIFHLCCFFLLFHALALTLLFTAPEDGGA

Query:  CRRWWAAGVAVGATSAVMAVLVQARVWAYWKAAGRLQRDRDSNRALLRCVQELRMKGGSFNLNKQPIVGKRMKSSSVEIKWGPLTWCSRNLPAVSLLCSA
        C +WW  GVA+GATS V  ++VQ ++W YWKA+ +LQR++  NRAL RCVQELRMKG  FNL+K+P +G RMKSSSVEIKWGPLTW SRN   + LLC +
Subjt:  CRRWWAAGVAVGATSAVMAVLVQARVWAYWKAAGRLQRDRDSNRALLRCVQELRMKGGSFNLNKQPIVGKRMKSSSVEIKWGPLTWCSRNLPAVSLLCSA

Query:  GAVVAASRFLLCG
        G V  AS+F+LCG
Subjt:  GAVVAASRFLLCG

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L2U7 Uncharacterized protein

3.2e-63

56.81

Show/hide

Query:  AHVVEIQIPIPAGQEDDENKKLICMAIEQHPLREISERPGHLLLLKLWQREERLLGVRMAGREARMESQKQQIFHLCCFFLLFHALALTLLFTAPEDGGA
        AH+VEI +     ++++  + L+   I+ HPLR+ISE  GHLLLLKLWQR+E L G+R+  RE +MES KQQIF LCCFF LFHAL+LTLL+T+  D   
Subjt:  AHVVEIQIPIPAGQEDDENKKLICMAIEQHPLREISERPGHLLLLKLWQREERLLGVRMAGREARMESQKQQIFHLCCFFLLFHALALTLLFTAPEDGGA

Query:  CRRWWAAGVAVGATSAVMAVLVQARVWAYWKAAGRLQRDRDSNRALLRCVQELRMKGGSFNLNKQPIVGKRMKSSSVEIKWGPLTWCSRNLPAVSLLCSA
        C++WW   V +GATS V  ++VQ ++W YWKA G+LQ+++  NRAL RCVQELRMKG  FNL+K+P +G RMKSSSVEIKWGPLTW SRN   +SLL  +
Subjt:  CRRWWAAGVAVGATSAVMAVLVQARVWAYWKAAGRLQRDRDSNRALLRCVQELRMKGGSFNLNKQPIVGKRMKSSSVEIKWGPLTWCSRNLPAVSLLCSA

Query:  GAVVAASRFLLCG
          +   S+F+LCG
Subjt:  GAVVAASRFLLCG

A0A1S3BL81 uncharacterized protein LOC103491049

1.0e-64

58.69

Show/hide

Query:  AHVVEIQIPIPAGQEDDENKKLICMAIEQHPLREISERPGHLLLLKLWQREERLLGVRMAGREARMESQKQQIFHLCCFFLLFHALALTLLFTAPEDGGA
        AH+VEI +     ++++  + L+   I+ HPLR+ISE  GHLLLLKLWQR+E L G+R+  RE +MES KQQIF LCCFF LFHAL+LTLL+T+  D   
Subjt:  AHVVEIQIPIPAGQEDDENKKLICMAIEQHPLREISERPGHLLLLKLWQREERLLGVRMAGREARMESQKQQIFHLCCFFLLFHALALTLLFTAPEDGGA

Query:  CRRWWAAGVAVGATSAVMAVLVQARVWAYWKAAGRLQRDRDSNRALLRCVQELRMKGGSFNLNKQPIVGKRMKSSSVEIKWGPLTWCSRNLPAVSLLCSA
        C++WW   V +GATS V  ++VQ ++W YWKA G+LQR++  NRAL RC QELRMKG  FNL+K+P +G RMKSSSVEIKWGPLTW SRN  A+SLL  +
Subjt:  CRRWWAAGVAVGATSAVMAVLVQARVWAYWKAAGRLQRDRDSNRALLRCVQELRMKGGSFNLNKQPIVGKRMKSSSVEIKWGPLTWCSRNLPAVSLLCSA

Query:  GAVVAASRFLLCG
          V AAS+F+LCG
Subjt:  GAVVAASRFLLCG

A0A6J1EWB5 uncharacterized protein LOC111438709

9.0e-66

61.4

Show/hide

Query:  ANAHVVEIQIPIPAGQEDDENKKLICMAIEQHPLREISERPGHLLLLKLWQREERLLGVRMAGREARMESQKQQIFHLCCFFLLFHALALTLLFTAPEDG
        A AHVVE    IPA     EN+ ++   IEQHPLR+ISE  GHLLLLKLWQREE L G+R+  RE ++ES KQQIF LCC+F LFHAL+LTLLFT+  D 
Subjt:  ANAHVVEIQIPIPAGQEDDENKKLICMAIEQHPLREISERPGHLLLLKLWQREERLLGVRMAGREARMESQKQQIFHLCCFFLLFHALALTLLFTAPEDG

Query:  GACRRWWAAGVAVGATSAVMAVLVQARVWAYWKAAGRLQRDRDSNRALLRCVQELRMKGGSFNLNKQPIVGKRMKSSSVEIKWGPLTWCSRNLPAVSLLC
          C +WW  GVA+GATS V  ++VQ ++W YWKA+ +LQR++  NRAL RCVQELRMKG  FNL+K+P +G RMKSSSVEIKWGPLT  SRN   + LLC
Subjt:  GACRRWWAAGVAVGATSAVMAVLVQARVWAYWKAAGRLQRDRDSNRALLRCVQELRMKGGSFNLNKQPIVGKRMKSSSVEIKWGPLTWCSRNLPAVSLLC

Query:  SAGAVVAASRFLLCG
         +G V  AS+F+LCG
Subjt:  SAGAVVAASRFLLCG

A0A6J1HN07 uncharacterized protein LOC111465114

1.2e-65

60.47

Show/hide

Query:  ANAHVVEIQIPIPAGQEDDENKKLICMAIEQHPLREISERPGHLLLLKLWQREERLLGVRMAGREARMESQKQQIFHLCCFFLLFHALALTLLFTAPEDG
        A  H+VE    IPA     EN+ ++   IEQHPLR+ISE  GHLLLLKLWQREE L G+R+  RE ++ES KQQIF LCC+F LFHAL+LTLLFT+  D 
Subjt:  ANAHVVEIQIPIPAGQEDDENKKLICMAIEQHPLREISERPGHLLLLKLWQREERLLGVRMAGREARMESQKQQIFHLCCFFLLFHALALTLLFTAPEDG

Query:  GACRRWWAAGVAVGATSAVMAVLVQARVWAYWKAAGRLQRDRDSNRALLRCVQELRMKGGSFNLNKQPIVGKRMKSSSVEIKWGPLTWCSRNLPAVSLLC
          C +WW  GVA+GATS V  ++VQ ++W YWKA+ +LQR++  NRAL R VQELRMKG  FNL+K+P +G RMKSSSVEIKWGPLTW SRN   + LLC
Subjt:  GACRRWWAAGVAVGATSAVMAVLVQARVWAYWKAAGRLQRDRDSNRALLRCVQELRMKGGSFNLNKQPIVGKRMKSSSVEIKWGPLTWCSRNLPAVSLLC

Query:  SAGAVVAASRFLLCG
         +G V  AS+F+LCG
Subjt:  SAGAVVAASRFLLCG

V4UTR0 Uncharacterized protein

2.5e-60

55.41

Show/hide

Query:  MANAHVVEIQIPIPAGQEDDENKKLICM----AIEQHPLREISERPGHLLLLKLWQREERLLGVRMAGREARMESQKQQIFHLCCFFLLFHALALTLLFT
        M +AHVVEI +      E+ + K L CM    AI+ HPL EIS+ PGHLLLLKLWQREE L G R++ +E+RM+S K++IF LCCFFL+FH   LTLLFT
Subjt:  MANAHVVEIQIPIPAGQEDDENKKLICM----AIEQHPLREISERPGHLLLLKLWQREERLLGVRMAGREARMESQKQQIFHLCCFFLLFHALALTLLFT

Query:  ---APEDGGACRRWWAAGVAVGATSAVMAVLVQARVWAYWKAAGRLQRDRDSNRALLRCVQELRMKGGSFNLNKQPIVGKRMKSSSVEIKWGPLTWCSRN
           +P+    CR+WW   +   +TS V   LVQ +++ YWK   +LQR+++ NRAL RC+QELRMKG SF+L+K+P+ GKRMKSSSVEIKW PLTWCS+N
Subjt:  ---APEDGGACRRWWAAGVAVGATSAVMAVLVQARVWAYWKAAGRLQRDRDSNRALLRCVQELRMKGGSFNLNKQPIVGKRMKSSSVEIKWGPLTWCSRN

Query:  LPAVSLLCSAGAVVAASRFLLC
        +  + LLC +G V  AS+F+LC
Subjt:  LPAVSLLCSAGAVVAASRFLLC

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT3G12870.1 unknown protein

2.1e-19

31.55

Show/hide

Query:  DDENKKLICMAIEQHPLREISERPGHLLLLKLWQREERLLGVRMAGREARMESQKQQIFHLCCFFLLFHALALTLLFTAPE------DGGACRRWWAAGV
        D      I  A  +HPL +I++ P H LLLK W +EE L+  R++ +E++++S +++I  L  FF LFH+++L LLF A           AC+R W   +
Subjt:  DDENKKLICMAIEQHPLREISERPGHLLLLKLWQREERLLGVRMAGREARMESQKQQIFHLCCFFLLFHALALTLLFTAPE------DGGACRRWWAAGV

Query:  A--VGATSAVMAVLVQARVWAYWKAAGRLQRDRDSNRALLRCVQELRMKGGSFNLNKQPIVGKRMKSSSVEIKWGPL-TWCSRNLPAVSLLCSAGAVVAA
           + +   + AV  ++ V ++ +    L+R+++  + L +CV+EL+ KG  F+L K+    +R KS  VE K  P+  W +R+   +     +  V+A 
Subjt:  A--VGATSAVMAVLVQARVWAYWKAAGRLQRDRDSNRALLRCVQELRMKGGSFNLNKQPIVGKRMKSSSVEIKWGPL-TWCSRNLPAVSLLCSAGAVVAA

Query:  SRFLLC
         R +LC
Subjt:  SRFLLC

AT5G56120.1 unknown protein

4.6e-54

47.62

Show/hide

Query:  NAHVVEIQIPIPAGQEDDENKKLICMA---------IEQHPLREISERPGHLLLLKLWQREERLLGVRMAGREARMESQKQQIFHLCCFFLLFHALALTL
        ++HVVEI +     +E  + ++L+ ++         I+QHPL EISE PGHLLLLKLWQREE L   R+  +E+R+ES K++IF LCCFFL+FH    TL
Subjt:  NAHVVEIQIPIPAGQEDDENKKLICMA---------IEQHPLREISERPGHLLLLKLWQREERLLGVRMAGREARMESQKQQIFHLCCFFLLFHALALTL

Query:  LFTAP--------EDGGACRRWWAAGVAVGATSAVMAVLVQARVWAYWKAAGRLQRDRDSNRALLRCVQELRMKGGSFNLNKQPIVGKRMKSSSVEIKWG
        ++++         +    C++WW       ATS V+  LVQA+++ +WK    + R+R+ NR L RCV ELRMKG SF+L+K+P+ GKRMKSSSVEIKW 
Subjt:  LFTAP--------EDGGACRRWWAAGVAVGATSAVMAVLVQARVWAYWKAAGRLQRDRDSNRALLRCVQELRMKGGSFNLNKQPIVGKRMKSSSVEIKWG

Query:  PLTWCSRNLPAVSLLCSAGAVVAASRFLLCG
        P+TW S+ L  + LLCSAG     S+F+LCG
Subjt:  PLTWCSRNLPAVSLLCSAGAVVAASRFLLCG

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

TCAATTTCCATTGTAATGGCAAACGCCCACGTCGTGGAAATCCAAATTCCAATCCCAGCGGGGCAAGAAGATGACGAGAATAAGAAGCTAATTTGTATGGCCATCGAACA
GCACCCGTTAAGGGAGATCTCCGAGAGGCCAGGGCATCTGCTCCTGCTGAAGCTATGGCAGCGAGAGGAGCGTCTGTTGGGGGTCCGAATGGCGGGCCGGGAAGCCAGAA
TGGAGTCTCAGAAGCAGCAGATCTTCCACCTCTGCTGCTTCTTCCTGCTCTTCCACGCCCTCGCCCTCACGCTCCTGTTCACGGCCCCGGAAGACGGCGGAGCGTGCAGG
CGGTGGTGGGCTGCGGGGGTGGCGGTGGGGGCGACGTCGGCCGTGATGGCGGTGCTGGTGCAGGCGCGGGTGTGGGCGTACTGGAAGGCGGCGGGGCGGCTGCAGAGGGA
CAGAGACTCCAACAGGGCTCTCCTCAGATGCGTGCAGGAGCTGAGGATGAAAGGAGGCTCCTTCAATTTGAACAAACAGCCCATCGTCGGGAAGAGGATGAAGAGCTCCA
GCGTGGAGATTAAGTGGGGCCCGCTCACTTGGTGCTCCAGGAATTTGCCTGCGGTTTCTCTGCTCTGCTCTGCTGGGGCTGTTGTTGCGGCTTCCAGGTTCCTCCTCTGT
GGA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

SISIVMANAHVVEIQIPIPAGQEDDENKKLICMAIEQHPLREISERPGHLLLLKLWQREERLLGVRMAGREARMESQKQQIFHLCCFFLLFHALALTLLFTAPEDGGACR
RWWAAGVAVGATSAVMAVLVQARVWAYWKAAGRLQRDRDSNRALLRCVQELRMKGGSFNLNKQPIVGKRMKSSSVEIKWGPLTWCSRNLPAVSLLCSAGAVVAASRFLLC
G

MS023842 (gene) of Bitter gourd (TR) v1 genome