; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS023843 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS023843
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionTHO complex subunit 3
Genome locationscaffold368:128679..132290
RNA-Seq ExpressionMS023843
SyntenyMS023843
Gene Ontology termsGO:0006406 - mRNA export from nucleus (biological process)
GO:0010267 - production of ta-siRNAs involved in RNA interference (biological process)
GO:0000445 - THO complex part of transcription export complex (cellular component)
GO:0005509 - calcium ion binding (molecular function)
GO:0005515 - protein binding (molecular function)
InterPro domainsIPR001680 - WD40 repeat
IPR015943 - WD40/YVTN repeat-like-containing domain superfamily
IPR019775 - WD40 repeat, conserved site
IPR020472 - G-protein beta WD-40 repeat
IPR024977 - Anaphase-promoting complex subunit 4, WD40 domain
IPR036322 - WD40-repeat-containing domain superfamily
IPR040132 - TREX component Tex1/THOC3


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0065764.1 THO complex subunit 3 [Cucumis melo var. makuwa]1.2e-17496.07Show/hide
Query:  MEEAALPFKNLQSREYQGHKKKVHSVAWNCTGMKLASGSVDQTARVWHIEPHGHGKVKDVELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDARSGK
        MEE+A  FKNL SREYQGHKKKVHSVAWNCTGMKLASGSVDQTARVWHIEPHGHGKVKDVELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDAR+GK
Subjt:  MEEAALPFKNLQSREYQGHKKKVHSVAWNCTGMKLASGSVDQTARVWHIEPHGHGKVKDVELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDARSGK

Query:  CSQQVELSGENINITYKPDGTHVAVGNRDDELTILDVRKFKPIHKRKFNYEVNEIAWNMTGEMFFLTTGNGTVEVLAYPSLRPLETLMAHTAGCYCIAID
        CSQQ ELSGENINITYKPDGTH+AVGNRDDELTILDVRKFKP+HKRKFNYEVNEIAWNMTGEMFFLTTGNGTVEVLAYPSLRP+ETLMAHTAGCYCIAID
Subjt:  CSQQVELSGENINITYKPDGTHVAVGNRDDELTILDVRKFKPIHKRKFNYEVNEIAWNMTGEMFFLTTGNGTVEVLAYPSLRPLETLMAHTAGCYCIAID

Query:  PVGAYFAVGSADSLVSLWDISQMLCVRTFTKLEWPVRTISFNYTGKYIASASEDLFIDISNVQTGRTVHQIPCRAAMNSVEWNPKHNLLAYAGDDKNKYQ
        PVG YFAVGSADSLVSLWDISQMLCVRTFTKLEWPVRTISFN+TG+YIASASEDLFIDISNVQTGRTVHQIPCRAAMNSVEWNPKHNLLAYAGDDKNKYQ
Subjt:  PVGAYFAVGSADSLVSLWDISQMLCVRTFTKLEWPVRTISFNYTGKYIASASEDLFIDISNVQTGRTVHQIPCRAAMNSVEWNPKHNLLAYAGDDKNKYQ

Query:  ADEGK
        ADEGK
Subjt:  ADEGK

XP_004149572.1 THO complex subunit 3 [Cucumis sativus]3.4e-17496.05Show/hide
Query:  MEEAALPFKNLQSREYQGHKKKVHSVAWNCTGMKLASGSVDQTARVWHIEPHGHGKVKDVELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDARSGK
        MEE+A  FKNL SREYQGHKKKVHSVAWNCTGMKLASGSVDQTARVWHIEPHGHGKVKDVELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDAR+GK
Subjt:  MEEAALPFKNLQSREYQGHKKKVHSVAWNCTGMKLASGSVDQTARVWHIEPHGHGKVKDVELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDARSGK

Query:  CSQQVELSGENINITYKPDGTHVAVGNRDDELTILDVRKFKPIHKRKFNYEVNEIAWNMTGEMFFLTTGNGTVEVLAYPSLRPLETLMAHTAGCYCIAID
        CSQQ ELSGENINITYKPDGTH+AVGNRDDELTILDVRKFKP+HKRKFNYEVNEIAWNMTGEMFFLTTGNGTVEVLAYPSLRP+ETLMAHTAGCYCIAID
Subjt:  CSQQVELSGENINITYKPDGTHVAVGNRDDELTILDVRKFKPIHKRKFNYEVNEIAWNMTGEMFFLTTGNGTVEVLAYPSLRPLETLMAHTAGCYCIAID

Query:  PVGAYFAVGSADSLVSLWDISQMLCVRTFTKLEWPVRTISFNYTGKYIASASEDLFIDISNVQTGRTVHQIPCRAAMNSVEWNPKHNLLAYAGDDKNKYQ
        PVG YFAVGSADSLVSLWDISQMLCVRTFTKLEWPVRTISFN+TG+YIASASEDLFIDISNVQTGRTVHQIPCRAAMNSVEWNPKHNLLAYAGDDKNKYQ
Subjt:  PVGAYFAVGSADSLVSLWDISQMLCVRTFTKLEWPVRTISFNYTGKYIASASEDLFIDISNVQTGRTVHQIPCRAAMNSVEWNPKHNLLAYAGDDKNKYQ

Query:  ADEG
        ADEG
Subjt:  ADEG

XP_022155008.1 THO complex subunit 3 isoform X1 [Momordica charantia]2.1e-17695Show/hide
Query:  MEEAALPFKNLQSREYQGHKKKVHSVAWNCTGMKLASGSVDQTARVWHIEPHGHGKVKDVELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDARSGK
        MEEAALPFKNLQSREYQGHKKKVHSVAWNCTGMKLASGSVDQTARVWHIEPHGHGKVKDVELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDARSGK
Subjt:  MEEAALPFKNLQSREYQGHKKKVHSVAWNCTGMKLASGSVDQTARVWHIEPHGHGKVKDVELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDARSGK

Query:  CSQQVELSGENINITYKPDGTHVAVGNRDDELTILDVRKFKPIHKRKFNYEVNEIAWNMTGEMFFLTTGNGTVEVLAYPSLRPLETLMAHTAGCYCIAID
        CSQQVELSGENINITYKPDGTHVAVGNRDDELTILDVRKFKPIHKRKFNYEVNEIAWNMTGEMFFLTTGNGTVEVLAYPSLRPLETLMAHTAGCYCIAID
Subjt:  CSQQVELSGENINITYKPDGTHVAVGNRDDELTILDVRKFKPIHKRKFNYEVNEIAWNMTGEMFFLTTGNGTVEVLAYPSLRPLETLMAHTAGCYCIAID

Query:  PVGAYFAVGSADSLVSLWDISQMLCVRTFTKLEWPVRTISFNYTGKYIASASEDLFIDI----------------SNVQTGRTVHQIPCRAAMNSVEWNP
        PVGAYFAVGSADSLVSLWDISQMLCVRTFTKLEWPVRTISFNYTGKYIASASEDLFIDI                SNVQTGRTVHQIPCRAAMNSVEWNP
Subjt:  PVGAYFAVGSADSLVSLWDISQMLCVRTFTKLEWPVRTISFNYTGKYIASASEDLFIDI----------------SNVQTGRTVHQIPCRAAMNSVEWNP

Query:  KHNLLAYAGDDKNKYQADEG
        KHNLLAYAGDDKNKYQADEG
Subjt:  KHNLLAYAGDDKNKYQADEG

XP_022155009.1 THO complex subunit 3 isoform X2 [Momordica charantia]1.6e-179100Show/hide
Query:  MEEAALPFKNLQSREYQGHKKKVHSVAWNCTGMKLASGSVDQTARVWHIEPHGHGKVKDVELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDARSGK
        MEEAALPFKNLQSREYQGHKKKVHSVAWNCTGMKLASGSVDQTARVWHIEPHGHGKVKDVELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDARSGK
Subjt:  MEEAALPFKNLQSREYQGHKKKVHSVAWNCTGMKLASGSVDQTARVWHIEPHGHGKVKDVELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDARSGK

Query:  CSQQVELSGENINITYKPDGTHVAVGNRDDELTILDVRKFKPIHKRKFNYEVNEIAWNMTGEMFFLTTGNGTVEVLAYPSLRPLETLMAHTAGCYCIAID
        CSQQVELSGENINITYKPDGTHVAVGNRDDELTILDVRKFKPIHKRKFNYEVNEIAWNMTGEMFFLTTGNGTVEVLAYPSLRPLETLMAHTAGCYCIAID
Subjt:  CSQQVELSGENINITYKPDGTHVAVGNRDDELTILDVRKFKPIHKRKFNYEVNEIAWNMTGEMFFLTTGNGTVEVLAYPSLRPLETLMAHTAGCYCIAID

Query:  PVGAYFAVGSADSLVSLWDISQMLCVRTFTKLEWPVRTISFNYTGKYIASASEDLFIDISNVQTGRTVHQIPCRAAMNSVEWNPKHNLLAYAGDDKNKYQ
        PVGAYFAVGSADSLVSLWDISQMLCVRTFTKLEWPVRTISFNYTGKYIASASEDLFIDISNVQTGRTVHQIPCRAAMNSVEWNPKHNLLAYAGDDKNKYQ
Subjt:  PVGAYFAVGSADSLVSLWDISQMLCVRTFTKLEWPVRTISFNYTGKYIASASEDLFIDISNVQTGRTVHQIPCRAAMNSVEWNPKHNLLAYAGDDKNKYQ

Query:  ADEG
        ADEG
Subjt:  ADEG

XP_038905145.1 THO complex subunit 3 [Benincasa hispida]5.8e-17496.38Show/hide
Query:  MEEAALPFKNLQSREYQGHKKKVHSVAWNCTGMKLASGSVDQTARVWHIEPHGHGKVKDVELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDARSGK
        MEE+A  FKNL SREYQGHKKKVHSVAWNCTGMKLASGSVDQTARVWHIEPHGHGKVKDVELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDAR+GK
Subjt:  MEEAALPFKNLQSREYQGHKKKVHSVAWNCTGMKLASGSVDQTARVWHIEPHGHGKVKDVELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDARSGK

Query:  CSQQVELSGENINITYKPDGTHVAVGNRDDELTILDVRKFKPIHKRKFNYEVNEIAWNMTGEMFFLTTGNGTVEVLAYPSLRPLETLMAHTAGCYCIAID
        CSQQ ELSGENINITYKPDGTH+AVGNRDDELTILDVRKFKPIHKRKFNYEVNEIAWNMTGEMFFLTTGNGTVEVLAYPSLRP+ETLMAHTAGCYCIAID
Subjt:  CSQQVELSGENINITYKPDGTHVAVGNRDDELTILDVRKFKPIHKRKFNYEVNEIAWNMTGEMFFLTTGNGTVEVLAYPSLRPLETLMAHTAGCYCIAID

Query:  PVGAYFAVGSADSLVSLWDISQMLCVRTFTKLEWPVRTISFNYTGKYIASASEDLFIDISNVQTGRTVHQIPCRAAMNSVEWNPKHNLLAYAGDDKNKYQ
        PVG YFAVGSADSLVSLWDISQMLCVRTFTKLEWPVRTISFN+TG+YIASASEDLFIDISNVQTGRTVHQIPCRAAMNSVEWNPKHNLLAYAGDDKNKYQ
Subjt:  PVGAYFAVGSADSLVSLWDISQMLCVRTFTKLEWPVRTISFNYTGKYIASASEDLFIDISNVQTGRTVHQIPCRAAMNSVEWNPKHNLLAYAGDDKNKYQ

Query:  ADEG
        ADEG
Subjt:  ADEG

TrEMBL top hitse value%identityAlignment
A0A0A0L651 WD_REPEATS_REGION domain-containing protein1.6e-17496.05Show/hide
Query:  MEEAALPFKNLQSREYQGHKKKVHSVAWNCTGMKLASGSVDQTARVWHIEPHGHGKVKDVELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDARSGK
        MEE+A  FKNL SREYQGHKKKVHSVAWNCTGMKLASGSVDQTARVWHIEPHGHGKVKDVELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDAR+GK
Subjt:  MEEAALPFKNLQSREYQGHKKKVHSVAWNCTGMKLASGSVDQTARVWHIEPHGHGKVKDVELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDARSGK

Query:  CSQQVELSGENINITYKPDGTHVAVGNRDDELTILDVRKFKPIHKRKFNYEVNEIAWNMTGEMFFLTTGNGTVEVLAYPSLRPLETLMAHTAGCYCIAID
        CSQQ ELSGENINITYKPDGTH+AVGNRDDELTILDVRKFKP+HKRKFNYEVNEIAWNMTGEMFFLTTGNGTVEVLAYPSLRP+ETLMAHTAGCYCIAID
Subjt:  CSQQVELSGENINITYKPDGTHVAVGNRDDELTILDVRKFKPIHKRKFNYEVNEIAWNMTGEMFFLTTGNGTVEVLAYPSLRPLETLMAHTAGCYCIAID

Query:  PVGAYFAVGSADSLVSLWDISQMLCVRTFTKLEWPVRTISFNYTGKYIASASEDLFIDISNVQTGRTVHQIPCRAAMNSVEWNPKHNLLAYAGDDKNKYQ
        PVG YFAVGSADSLVSLWDISQMLCVRTFTKLEWPVRTISFN+TG+YIASASEDLFIDISNVQTGRTVHQIPCRAAMNSVEWNPKHNLLAYAGDDKNKYQ
Subjt:  PVGAYFAVGSADSLVSLWDISQMLCVRTFTKLEWPVRTISFNYTGKYIASASEDLFIDISNVQTGRTVHQIPCRAAMNSVEWNPKHNLLAYAGDDKNKYQ

Query:  ADEG
        ADEG
Subjt:  ADEG

A0A1S3BM38 THO complex subunit 31.6e-17496.05Show/hide
Query:  MEEAALPFKNLQSREYQGHKKKVHSVAWNCTGMKLASGSVDQTARVWHIEPHGHGKVKDVELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDARSGK
        MEE+A  FKNL SREYQGHKKKVHSVAWNCTGMKLASGSVDQTARVWHIEPHGHGKVKDVELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDAR+GK
Subjt:  MEEAALPFKNLQSREYQGHKKKVHSVAWNCTGMKLASGSVDQTARVWHIEPHGHGKVKDVELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDARSGK

Query:  CSQQVELSGENINITYKPDGTHVAVGNRDDELTILDVRKFKPIHKRKFNYEVNEIAWNMTGEMFFLTTGNGTVEVLAYPSLRPLETLMAHTAGCYCIAID
        CSQQ ELSGENINITYKPDGTH+AVGNRDDELTILDVRKFKP+HKRKFNYEVNEIAWNMTGEMFFLTTGNGTVEVLAYPSLRP+ETLMAHTAGCYCIAID
Subjt:  CSQQVELSGENINITYKPDGTHVAVGNRDDELTILDVRKFKPIHKRKFNYEVNEIAWNMTGEMFFLTTGNGTVEVLAYPSLRPLETLMAHTAGCYCIAID

Query:  PVGAYFAVGSADSLVSLWDISQMLCVRTFTKLEWPVRTISFNYTGKYIASASEDLFIDISNVQTGRTVHQIPCRAAMNSVEWNPKHNLLAYAGDDKNKYQ
        PVG YFAVGSADSLVSLWDISQMLCVRTFTKLEWPVRTISFN+TG+YIASASEDLFIDISNVQTGRTVHQIPCRAAMNSVEWNPKHNLLAYAGDDKNKYQ
Subjt:  PVGAYFAVGSADSLVSLWDISQMLCVRTFTKLEWPVRTISFNYTGKYIASASEDLFIDISNVQTGRTVHQIPCRAAMNSVEWNPKHNLLAYAGDDKNKYQ

Query:  ADEG
        ADEG
Subjt:  ADEG

A0A5D3BC11 THO complex subunit 35.7e-17596.07Show/hide
Query:  MEEAALPFKNLQSREYQGHKKKVHSVAWNCTGMKLASGSVDQTARVWHIEPHGHGKVKDVELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDARSGK
        MEE+A  FKNL SREYQGHKKKVHSVAWNCTGMKLASGSVDQTARVWHIEPHGHGKVKDVELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDAR+GK
Subjt:  MEEAALPFKNLQSREYQGHKKKVHSVAWNCTGMKLASGSVDQTARVWHIEPHGHGKVKDVELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDARSGK

Query:  CSQQVELSGENINITYKPDGTHVAVGNRDDELTILDVRKFKPIHKRKFNYEVNEIAWNMTGEMFFLTTGNGTVEVLAYPSLRPLETLMAHTAGCYCIAID
        CSQQ ELSGENINITYKPDGTH+AVGNRDDELTILDVRKFKP+HKRKFNYEVNEIAWNMTGEMFFLTTGNGTVEVLAYPSLRP+ETLMAHTAGCYCIAID
Subjt:  CSQQVELSGENINITYKPDGTHVAVGNRDDELTILDVRKFKPIHKRKFNYEVNEIAWNMTGEMFFLTTGNGTVEVLAYPSLRPLETLMAHTAGCYCIAID

Query:  PVGAYFAVGSADSLVSLWDISQMLCVRTFTKLEWPVRTISFNYTGKYIASASEDLFIDISNVQTGRTVHQIPCRAAMNSVEWNPKHNLLAYAGDDKNKYQ
        PVG YFAVGSADSLVSLWDISQMLCVRTFTKLEWPVRTISFN+TG+YIASASEDLFIDISNVQTGRTVHQIPCRAAMNSVEWNPKHNLLAYAGDDKNKYQ
Subjt:  PVGAYFAVGSADSLVSLWDISQMLCVRTFTKLEWPVRTISFNYTGKYIASASEDLFIDISNVQTGRTVHQIPCRAAMNSVEWNPKHNLLAYAGDDKNKYQ

Query:  ADEGK
        ADEGK
Subjt:  ADEGK

A0A6J1DLU0 THO complex subunit 3 isoform X11.0e-17695Show/hide
Query:  MEEAALPFKNLQSREYQGHKKKVHSVAWNCTGMKLASGSVDQTARVWHIEPHGHGKVKDVELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDARSGK
        MEEAALPFKNLQSREYQGHKKKVHSVAWNCTGMKLASGSVDQTARVWHIEPHGHGKVKDVELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDARSGK
Subjt:  MEEAALPFKNLQSREYQGHKKKVHSVAWNCTGMKLASGSVDQTARVWHIEPHGHGKVKDVELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDARSGK

Query:  CSQQVELSGENINITYKPDGTHVAVGNRDDELTILDVRKFKPIHKRKFNYEVNEIAWNMTGEMFFLTTGNGTVEVLAYPSLRPLETLMAHTAGCYCIAID
        CSQQVELSGENINITYKPDGTHVAVGNRDDELTILDVRKFKPIHKRKFNYEVNEIAWNMTGEMFFLTTGNGTVEVLAYPSLRPLETLMAHTAGCYCIAID
Subjt:  CSQQVELSGENINITYKPDGTHVAVGNRDDELTILDVRKFKPIHKRKFNYEVNEIAWNMTGEMFFLTTGNGTVEVLAYPSLRPLETLMAHTAGCYCIAID

Query:  PVGAYFAVGSADSLVSLWDISQMLCVRTFTKLEWPVRTISFNYTGKYIASASEDLFIDI----------------SNVQTGRTVHQIPCRAAMNSVEWNP
        PVGAYFAVGSADSLVSLWDISQMLCVRTFTKLEWPVRTISFNYTGKYIASASEDLFIDI                SNVQTGRTVHQIPCRAAMNSVEWNP
Subjt:  PVGAYFAVGSADSLVSLWDISQMLCVRTFTKLEWPVRTISFNYTGKYIASASEDLFIDI----------------SNVQTGRTVHQIPCRAAMNSVEWNP

Query:  KHNLLAYAGDDKNKYQADEG
        KHNLLAYAGDDKNKYQADEG
Subjt:  KHNLLAYAGDDKNKYQADEG

A0A6J1DNX6 THO complex subunit 3 isoform X27.6e-180100Show/hide
Query:  MEEAALPFKNLQSREYQGHKKKVHSVAWNCTGMKLASGSVDQTARVWHIEPHGHGKVKDVELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDARSGK
        MEEAALPFKNLQSREYQGHKKKVHSVAWNCTGMKLASGSVDQTARVWHIEPHGHGKVKDVELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDARSGK
Subjt:  MEEAALPFKNLQSREYQGHKKKVHSVAWNCTGMKLASGSVDQTARVWHIEPHGHGKVKDVELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDARSGK

Query:  CSQQVELSGENINITYKPDGTHVAVGNRDDELTILDVRKFKPIHKRKFNYEVNEIAWNMTGEMFFLTTGNGTVEVLAYPSLRPLETLMAHTAGCYCIAID
        CSQQVELSGENINITYKPDGTHVAVGNRDDELTILDVRKFKPIHKRKFNYEVNEIAWNMTGEMFFLTTGNGTVEVLAYPSLRPLETLMAHTAGCYCIAID
Subjt:  CSQQVELSGENINITYKPDGTHVAVGNRDDELTILDVRKFKPIHKRKFNYEVNEIAWNMTGEMFFLTTGNGTVEVLAYPSLRPLETLMAHTAGCYCIAID

Query:  PVGAYFAVGSADSLVSLWDISQMLCVRTFTKLEWPVRTISFNYTGKYIASASEDLFIDISNVQTGRTVHQIPCRAAMNSVEWNPKHNLLAYAGDDKNKYQ
        PVGAYFAVGSADSLVSLWDISQMLCVRTFTKLEWPVRTISFNYTGKYIASASEDLFIDISNVQTGRTVHQIPCRAAMNSVEWNPKHNLLAYAGDDKNKYQ
Subjt:  PVGAYFAVGSADSLVSLWDISQMLCVRTFTKLEWPVRTISFNYTGKYIASASEDLFIDISNVQTGRTVHQIPCRAAMNSVEWNPKHNLLAYAGDDKNKYQ

Query:  ADEG
        ADEG
Subjt:  ADEG

SwissProt top hitse value%identityAlignment
P14197 WD repeat-containing protein AAC32.5e-6336.51Show/hide
Query:  MEEAALPFKNLQSREYQGHKKKVHSVAWNCTGMKLASGSVDQTARVWHIEPHG----------------HGKVKD-VELKGHTDSVDQLCWDPKHSDLIA
        ++ A+  F    ++++ G+KKK  SVAWN  G K+AS   D   RVW+ +P G                +  +K+ +ELKGH  S++++ W PK++DL+A
Subjt:  MEEAALPFKNLQSREYQGHKKKVHSVAWNCTGMKLASGSVDQTARVWHIEPHG----------------HGKVKD-VELKGHTDSVDQLCWDPKHSDLIA

Query:  TASGDKTVRLWDARSGKCSQQVELSGENINITYKPDGTHVAVGNRDDELTILDVRKFKPIHKRKFN-YEVNEIAWNMTGEMFFLTTGNGTVEVLAY----
        +A  DK +++WD + GKC   V  + ENI++ + PDG  +    RDD L ++D+   K +   KFN  E+N++ W+  G++  +    G +E   +    
Subjt:  TASGDKTVRLWDARSGKCSQQVELSGENINITYKPDGTHVAVGNRDDELTILDVRKFKPIHKRKFN-YEVNEIAWNMTGEMFFLTTGNGTVEVLAY----

Query:  -PSLRPLETLMAHTAGCYCIAIDPVGAYFAVGSADSLVSLWDISQMLCVRTFTKLEWPVRTISFNYTGKYIASASEDLFIDISNVQTGRTVHQIPCRAAM
           ++ L+TL  HTA  YC+  DP G Y A GSADS+VSLWDI  M+CV+TF K  +P R++SF++ G++IA++S +  I+I ++++ + +H I C + +
Subjt:  -PSLRPLETLMAHTAGCYCIAIDPVGAYFAVGSADSLVSLWDISQMLCVRTFTKLEWPVRTISFNYTGKYIASASEDLFIDISNVQTGRTVHQIPCRAAM

Query:  NSVEWNPKHNLLAYA
        +S+ W+P   LLAYA
Subjt:  NSVEWNPKHNLLAYA

Q29RH4 THO complex subunit 31.1e-9051.89Show/hide
Query:  QSREYQGHKKKVHSVAWNCTGMKLASGSVDQTARVWHIEPHGHGKVKDVELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDARSGKCSQQVELSGEN
        ++RE+  H  KVHSVAW+C G +LASGS D+TA V+ +E      VK+   +GH DSVDQLCW P + DL  TASGDKT+R+WD R+ KC   V   GEN
Subjt:  QSREYQGHKKKVHSVAWNCTGMKLASGSVDQTARVWHIEPHGHGKVKDVELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDARSGKCSQQVELSGEN

Query:  INITYKPDGTHVAVGNRDDELTILDVRKFKPIHKRKFNYEVNEIAWNMTGEMFFLTTGNGTVEVLAYPSLRPLETLMAHTAGCYCIAIDPVGAYFAVGSA
        INI + PDG  +AVGN+DD +T +D +  +   + +F +EVNEI+WN    MFFLT GNG + +L+YP L+P++++ AH + C CI  DP+G YFA GSA
Subjt:  INITYKPDGTHVAVGNRDDELTILDVRKFKPIHKRKFNYEVNEIAWNMTGEMFFLTTGNGTVEVLAYPSLRPLETLMAHTAGCYCIAIDPVGAYFAVGSA

Query:  DSLVSLWDISQMLCVRTFTKLEWPVRTISFNYTGKYIASASEDLFIDISNVQTGRTVHQIPCRAAMNSVEWNPKHNLLAYAGDDKN-KYQA
        D+LVSLWD+ +++CVR F++L+WPVRT+SF++ GK +ASASED FIDI+ V+TG  + ++ C +   +V W+PK  LLA+A DDK+ KY +
Subjt:  DSLVSLWDISQMLCVRTFTKLEWPVRTISFNYTGKYIASASEDLFIDISNVQTGRTVHQIPCRAAMNSVEWNPKHNLLAYAGDDKN-KYQA

Q8VE80 THO complex subunit 31.1e-9051.89Show/hide
Query:  QSREYQGHKKKVHSVAWNCTGMKLASGSVDQTARVWHIEPHGHGKVKDVELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDARSGKCSQQVELSGEN
        ++RE+  H  KVHSVAW+C G +LASGS D+TA V+ +E      VK+   +GH DSVDQLCW P + DL  TASGDKT+R+WD R+ KC   V   GEN
Subjt:  QSREYQGHKKKVHSVAWNCTGMKLASGSVDQTARVWHIEPHGHGKVKDVELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDARSGKCSQQVELSGEN

Query:  INITYKPDGTHVAVGNRDDELTILDVRKFKPIHKRKFNYEVNEIAWNMTGEMFFLTTGNGTVEVLAYPSLRPLETLMAHTAGCYCIAIDPVGAYFAVGSA
        INI + PDG  +AVGN+DD +T +D +  +   + +F +EVNEI+WN    MFFLT GNG + +L+YP L+P++++ AH + C CI  DP+G YFA GSA
Subjt:  INITYKPDGTHVAVGNRDDELTILDVRKFKPIHKRKFNYEVNEIAWNMTGEMFFLTTGNGTVEVLAYPSLRPLETLMAHTAGCYCIAIDPVGAYFAVGSA

Query:  DSLVSLWDISQMLCVRTFTKLEWPVRTISFNYTGKYIASASEDLFIDISNVQTGRTVHQIPCRAAMNSVEWNPKHNLLAYAGDDKN-KYQA
        D+LVSLWD+ +++CVR F++L+WPVRT+SF++ GK +ASASED FIDI+ V+TG  + ++ C +   +V W+PK  LLA+A DDK+ KY +
Subjt:  DSLVSLWDISQMLCVRTFTKLEWPVRTISFNYTGKYIASASEDLFIDISNVQTGRTVHQIPCRAAMNSVEWNPKHNLLAYAGDDKN-KYQA

Q96J01 THO complex subunit 31.4e-9051.89Show/hide
Query:  QSREYQGHKKKVHSVAWNCTGMKLASGSVDQTARVWHIEPHGHGKVKDVELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDARSGKCSQQVELSGEN
        ++RE+  H  KVHSVAW+C G +LASGS D+TA V+ +E      VK+   +GH DSVDQLCW P + DL  TASGDKT+R+WD R+ KC   V   GEN
Subjt:  QSREYQGHKKKVHSVAWNCTGMKLASGSVDQTARVWHIEPHGHGKVKDVELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDARSGKCSQQVELSGEN

Query:  INITYKPDGTHVAVGNRDDELTILDVRKFKPIHKRKFNYEVNEIAWNMTGEMFFLTTGNGTVEVLAYPSLRPLETLMAHTAGCYCIAIDPVGAYFAVGSA
        INI + PDG  +AVGN+DD +T +D +  +   + +F +EVNEI+WN    MFFLT GNG + +L+YP L+P++++ AH + C CI  DP+G YFA GSA
Subjt:  INITYKPDGTHVAVGNRDDELTILDVRKFKPIHKRKFNYEVNEIAWNMTGEMFFLTTGNGTVEVLAYPSLRPLETLMAHTAGCYCIAIDPVGAYFAVGSA

Query:  DSLVSLWDISQMLCVRTFTKLEWPVRTISFNYTGKYIASASEDLFIDISNVQTGRTVHQIPCRAAMNSVEWNPKHNLLAYAGDDKN-KYQA
        D+LVSLWD+ +++CVR F++L+WPVRT+SF++ GK +ASASED FIDI+ V+TG  + ++ C +   +V W+PK  LLA+A DDK+ KY +
Subjt:  DSLVSLWDISQMLCVRTFTKLEWPVRTISFNYTGKYIASASEDLFIDISNVQTGRTVHQIPCRAAMNSVEWNPKHNLLAYAGDDKN-KYQA

Q9FKT5 THO complex subunit 31.1e-16287.87Show/hide
Query:  MEEAALPFKNLQSREYQGHKKKVHSVAWNCTGMKLASGSVDQTARVWHIEPHGHGKVKDVELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDARSGK
        MEE  +PFK+L SREYQGHKKKVHSVAWN  G KLASGSVDQTAR+W+IEPHGH K KD+ELKGHTDSVDQLCWDPKHSDL+ATASGDK+VRLWDARSGK
Subjt:  MEEAALPFKNLQSREYQGHKKKVHSVAWNCTGMKLASGSVDQTARVWHIEPHGHGKVKDVELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDARSGK

Query:  CSQQVELSGENINITYKPDGTHVAVGNRDDELTILDVRKFKPIHKRKFNYEVNEIAWNMTGEMFFLTTGNGTVEVLAYPSLRPLETLMAHTAGCYCIAID
        C+QQVELSGENINITYKPDGTHVAVGNRDDELTILDVRKFKP+H+RKFNYEVNEIAWNM G+ FFLTTG GTVEVL+YPSL+PL+TL AHTAGCYCIAID
Subjt:  CSQQVELSGENINITYKPDGTHVAVGNRDDELTILDVRKFKPIHKRKFNYEVNEIAWNMTGEMFFLTTGNGTVEVLAYPSLRPLETLMAHTAGCYCIAID

Query:  PVGAYFAVGSADSLVSLWDISQMLCVRTFTKLEWPVRTISFNYTGKYIASASEDLFIDISNVQTGRTVHQIPCRAAMNSVEWNPKHNLLAYAGDDKN-KY
        P G YFAVGSADSLVSLWDIS MLC+RTFTKLEWPVRTISFNY+G+YIASASEDLFIDI+NVQTGRTVHQIPCRAAMNSVEWNPK+NLLAYAGDDKN KY
Subjt:  PVGAYFAVGSADSLVSLWDISQMLCVRTFTKLEWPVRTISFNYTGKYIASASEDLFIDISNVQTGRTVHQIPCRAAMNSVEWNPKHNLLAYAGDDKN-KY

Query:  QADEG
          DEG
Subjt:  QADEG

Arabidopsis top hitse value%identityAlignment
AT1G11160.1 Transducin/WD40 repeat-like superfamily protein3.0e-1121.23Show/hide
Query:  VNEIAWNMTGEMFFLTTGNGTVEVLAYPSLRPLETLMAHTAGCYCIAIDPVGAYFAVGSADSLVSLWDISQMLCVRTFTKLEWPVRTISFNYTGKYIASA
        V+ +A+N    +      +G +++      + +     H + C  +   P G + A GS+D+ + +WD  +  C++T+      + TI F+  G+++ S 
Subjt:  VNEIAWNMTGEMFFLTTGNGTVEVLAYPSLRPLETLMAHTAGCYCIAIDPVGAYFAVGSADSLVSLWDISQMLCVRTFTKLEWPVRTISFNYTGKYIASA

Query:  SEDLFIDISNVQTGRTVHQIPC-RAAMNSVEWNPKHNLLAYAGDDK
          D  + + ++  G+ +H+  C    + S++++P   LLA    D+
Subjt:  SEDLFIDISNVQTGRTVHQIPC-RAAMNSVEWNPKHNLLAYAGDDK

AT5G08390.1 Transducin/WD40 repeat-like superfamily protein2.1e-1223.29Show/hide
Query:  VNEIAWNMTGEMFFLTTGNGTVEVLAYPSLRPLETLMAHTAGCYCIAIDPVGAYFAVGSADSLVSLWDISQMLCVRTFTKLEWPVRTISFNYTGKYIASA
        ++ + ++ +  +      +GT+++      + + TL  H + C  +   P G +FA GS D+ + +WDI +  C+ T+      V  + F   G++I S 
Subjt:  VNEIAWNMTGEMFFLTTGNGTVEVLAYPSLRPLETLMAHTAGCYCIAIDPVGAYFAVGSADSLVSLWDISQMLCVRTFTKLEWPVRTISFNYTGKYIASA

Query:  SEDLFIDISNVQTGRTVHQIPC-RAAMNSVEWNPKHNLLAYAGDDK
         ED  + + ++  G+ +H+       + S++++P   LLA    DK
Subjt:  SEDLFIDISNVQTGRTVHQIPC-RAAMNSVEWNPKHNLLAYAGDDK

AT5G25150.1 TBP-associated factor 52.6e-1524.9Show/hide
Query:  YQGHKKKVHSVAWNCTGMKLASGSVDQTARVWHIEPHGHGKVKDVE-LKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDARSGKCSQ-QVELSGENIN
        Y+GH   V    ++  G   AS S D+TAR+W ++     +++ +  + GH   VD + W P + + IAT S DKTVRLWD ++G+C +  +      ++
Subjt:  YQGHKKKVHSVAWNCTGMKLASGSVDQTARVWHIEPHGHGKVKDVE-LKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDARSGKCSQ-QVELSGENIN

Query:  ITYKPDGTHVAVGNRDDELTILDVRKFKPIHKRKFNYEVNEIAWNMTGEMFFLTTGNGTVEVLAYPSLRPLETLMAHTAGCYCIAIDPVGAYFAVGSADS
        +   PDG ++A G+ D                                         GT+ +    + R +  LM H +  + ++    G+  A GSAD 
Subjt:  ITYKPDGTHVAVGNRDDELTILDVRKFKPIHKRKFNYEVNEIAWNMTGEMFFLTTGNGTVEVLAYPSLRPLETLMAHTAGCYCIAIDPVGAYFAVGSADS

Query:  LVSLWDI----------------SQMLCVRTFTKLEWPVRTISFN
         V LWD+                +++  +RTF     PV  + F+
Subjt:  LVSLWDI----------------SQMLCVRTFTKLEWPVRTISFN

AT5G56130.1 Transducin/WD40 repeat-like superfamily protein7.6e-16487.87Show/hide
Query:  MEEAALPFKNLQSREYQGHKKKVHSVAWNCTGMKLASGSVDQTARVWHIEPHGHGKVKDVELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDARSGK
        MEE  +PFK+L SREYQGHKKKVHSVAWN  G KLASGSVDQTAR+W+IEPHGH K KD+ELKGHTDSVDQLCWDPKHSDL+ATASGDK+VRLWDARSGK
Subjt:  MEEAALPFKNLQSREYQGHKKKVHSVAWNCTGMKLASGSVDQTARVWHIEPHGHGKVKDVELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDARSGK

Query:  CSQQVELSGENINITYKPDGTHVAVGNRDDELTILDVRKFKPIHKRKFNYEVNEIAWNMTGEMFFLTTGNGTVEVLAYPSLRPLETLMAHTAGCYCIAID
        C+QQVELSGENINITYKPDGTHVAVGNRDDELTILDVRKFKP+H+RKFNYEVNEIAWNM G+ FFLTTG GTVEVL+YPSL+PL+TL AHTAGCYCIAID
Subjt:  CSQQVELSGENINITYKPDGTHVAVGNRDDELTILDVRKFKPIHKRKFNYEVNEIAWNMTGEMFFLTTGNGTVEVLAYPSLRPLETLMAHTAGCYCIAID

Query:  PVGAYFAVGSADSLVSLWDISQMLCVRTFTKLEWPVRTISFNYTGKYIASASEDLFIDISNVQTGRTVHQIPCRAAMNSVEWNPKHNLLAYAGDDKN-KY
        P G YFAVGSADSLVSLWDIS MLC+RTFTKLEWPVRTISFNY+G+YIASASEDLFIDI+NVQTGRTVHQIPCRAAMNSVEWNPK+NLLAYAGDDKN KY
Subjt:  PVGAYFAVGSADSLVSLWDISQMLCVRTFTKLEWPVRTISFNYTGKYIASASEDLFIDISNVQTGRTVHQIPCRAAMNSVEWNPKHNLLAYAGDDKN-KY

Query:  QADEG
          DEG
Subjt:  QADEG

AT5G67320.1 WD-40 repeat family protein1.0e-2227.92Show/hide
Query:  KKVHSVAWNCTGMKLASGSVDQTARVWHIEPHGHGKVKDVELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDARSGKCSQQVEL-SGENINITYKPD
        K V ++ WN  G  LA+GS D  AR+W +    +G++    L  H   +  L W+ K  D + T S D+T  +WD ++ +  QQ E  SG  +++ ++ +
Subjt:  KKVHSVAWNCTGMKLASGSVDQTARVWHIEPHGHGKVKDVELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDARSGKCSQQVEL-SGENINITYKPD

Query:  GTHVAVGNRDDELTILDVRKFKPIHK-RKFNYEVNEIAWNMTGEMFFLTTGNGTVEVLAYPSLRPLETLMAHTAGCYCIAIDPVG---------AYFAVG
            A  + D  + +  + + +P         EVN + W+ TG +    + + T ++        +  L  HT   Y I   P G            A  
Subjt:  GTHVAVGNRDDELTILDVRKFKPIHK-RKFNYEVNEIAWNMTGEMFFLTTGNGTVEVLAYPSLRPLETLMAHTAGCYCIAIDPVG---------AYFAVG

Query:  SADSLVSLWD--ISQMLCVRTFTKLEWPVRTISFNYTGKYIASASEDLFIDISNVQTGRTVHQIPCRAAMNSVEWNPKHNLLA
        S DS V LWD  + +MLC  +F     PV +++F+  G+YIAS S D  I I +++ G+ V        +  V WN + N +A
Subjt:  SADSLVSLWD--ISQMLCVRTFTKLEWPVRTISFNYTGKYIASASEDLFIDISNVQTGRTVHQIPCRAAMNSVEWNPKHNLLA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGAAGCTGCCCTACCTTTTAAGAATCTTCAGAGCAGAGAGTATCAAGGTCACAAGAAGAAGGTACATTCTGTGGCATGGAATTGCACGGGCATGAAGCTTGCTTC
CGGTTCTGTGGATCAAACTGCTCGAGTTTGGCACATTGAGCCTCATGGACATGGTAAGGTTAAGGATGTTGAGTTGAAAGGGCATACTGATAGTGTAGATCAGCTATGTT
GGGATCCTAAACATTCTGATCTTATAGCAACTGCTTCTGGGGACAAGACTGTTCGACTATGGGATGCTCGTAGTGGGAAATGCTCACAGCAAGTTGAACTCAGTGGGGAA
AATATCAACATCACCTACAAACCTGACGGGACACACGTAGCTGTTGGGAATAGGGATGATGAACTCACAATACTAGACGTTAGGAAGTTCAAGCCAATTCACAAGCGCAA
GTTCAATTATGAGGTGAATGAAATTGCTTGGAACATGACTGGGGAGATGTTTTTCCTGACAACTGGAAATGGTACTGTTGAAGTACTAGCATACCCGTCGCTTCGACCAC
TTGAAACTCTTATGGCTCATACAGCTGGTTGTTACTGCATTGCAATTGACCCAGTTGGAGCGTATTTTGCCGTTGGAAGTGCTGATTCCTTAGTTAGCCTATGGGATATC
TCTCAGATGCTCTGCGTGCGAACATTTACGAAACTCGAATGGCCTGTGAGGACAATAAGTTTCAACTACACTGGAAAATACATTGCTTCTGCCAGCGAGGACTTGTTCAT
TGATATATCGAATGTCCAAACGGGAAGAACGGTACATCAGATTCCTTGTCGGGCGGCGATGAACAGCGTGGAGTGGAATCCAAAACACAATTTACTTGCATATGCTGGGG
ATGACAAGAACAAGTATCAGGCTGATGAAGGCAAGTTATCTTTTTTA
mRNA sequenceShow/hide mRNA sequence
ATGGAAGAAGCTGCCCTACCTTTTAAGAATCTTCAGAGCAGAGAGTATCAAGGTCACAAGAAGAAGGTACATTCTGTGGCATGGAATTGCACGGGCATGAAGCTTGCTTC
CGGTTCTGTGGATCAAACTGCTCGAGTTTGGCACATTGAGCCTCATGGACATGGTAAGGTTAAGGATGTTGAGTTGAAAGGGCATACTGATAGTGTAGATCAGCTATGTT
GGGATCCTAAACATTCTGATCTTATAGCAACTGCTTCTGGGGACAAGACTGTTCGACTATGGGATGCTCGTAGTGGGAAATGCTCACAGCAAGTTGAACTCAGTGGGGAA
AATATCAACATCACCTACAAACCTGACGGGACACACGTAGCTGTTGGGAATAGGGATGATGAACTCACAATACTAGACGTTAGGAAGTTCAAGCCAATTCACAAGCGCAA
GTTCAATTATGAGGTGAATGAAATTGCTTGGAACATGACTGGGGAGATGTTTTTCCTGACAACTGGAAATGGTACTGTTGAAGTACTAGCATACCCGTCGCTTCGACCAC
TTGAAACTCTTATGGCTCATACAGCTGGTTGTTACTGCATTGCAATTGACCCAGTTGGAGCGTATTTTGCCGTTGGAAGTGCTGATTCCTTAGTTAGCCTATGGGATATC
TCTCAGATGCTCTGCGTGCGAACATTTACGAAACTCGAATGGCCTGTGAGGACAATAAGTTTCAACTACACTGGAAAATACATTGCTTCTGCCAGCGAGGACTTGTTCAT
TGATATATCGAATGTCCAAACGGGAAGAACGGTACATCAGATTCCTTGTCGGGCGGCGATGAACAGCGTGGAGTGGAATCCAAAACACAATTTACTTGCATATGCTGGGG
ATGACAAGAACAAGTATCAGGCTGATGAAGGCAAGTTATCTTTTTTA
Protein sequenceShow/hide protein sequence
MEEAALPFKNLQSREYQGHKKKVHSVAWNCTGMKLASGSVDQTARVWHIEPHGHGKVKDVELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDARSGKCSQQVELSGE
NINITYKPDGTHVAVGNRDDELTILDVRKFKPIHKRKFNYEVNEIAWNMTGEMFFLTTGNGTVEVLAYPSLRPLETLMAHTAGCYCIAIDPVGAYFAVGSADSLVSLWDI
SQMLCVRTFTKLEWPVRTISFNYTGKYIASASEDLFIDISNVQTGRTVHQIPCRAAMNSVEWNPKHNLLAYAGDDKNKYQADEGKLSFL