CuGenDBv2

Gene ID	MS023845
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	30S ribosomal protein S16, chloroplastic
Genome location	scaffold368:148280..148462
RNA-Seq Expression	MS023845
Synteny	MS023845
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0005840 - ribosome (cellular component) GO:0009507 - chloroplast (cellular component) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	IPR000307 - Ribosomal protein S16 IPR023803 - Ribosomal protein S16 domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

Q2QDA6.1 RecName: Full=30S ribosomal protein S16, chloroplastic [Cucumis sativus]

6.8e-26

98.36

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Query:  YRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPIGTVHDILKKAGVF
        YRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQP GTVHDILKKAGVF
Subjt:  YRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPIGTVHDILKKAGVF

QJS52337.1 ribosomal protein S16 [Indofevillea khasiana]

6.8e-26

98.36

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Query:  YRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPIGTVHDILKKAGVF
        YRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQP GTVHDILKKAGVF
Subjt:  YRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPIGTVHDILKKAGVF

YP_009674373.1 ribosomal protein S16 [Siraitia grosvenorii]

6.8e-26

98.36

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Query:  YRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPIGTVHDILKKAGVF
        YRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQP GTVHDILKKAGVF
Subjt:  YRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPIGTVHDILKKAGVF

YP_009753071.1 ribosomal protein S16 [Corallocarpus boehmii]

6.8e-26

98.36

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Query:  YRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPIGTVHDILKKAGVF
        YRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQP GTVHDILKKAGVF
Subjt:  YRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPIGTVHDILKKAGVF

YP_010131076.1 ribosomal protein S16 [Benincasa hispida]

6.8e-26

98.36

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Query:  YRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPIGTVHDILKKAGVF
        YRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQP GTVHDILKKAGVF
Subjt:  YRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPIGTVHDILKKAGVF

TrEMBL top hits

e value

%identity

Alignment

A0A1X9Q1R7 30S ribosomal protein S16, chloroplastic

3.3e-26

98.36

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Query:  YRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPIGTVHDILKKAGVF
        YRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQP GTVHDILKKAGVF
Subjt:  YRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPIGTVHDILKKAGVF

A0A218KG12 30S ribosomal protein S16, chloroplastic

3.3e-26

98.36

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Query:  YRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPIGTVHDILKKAGVF
        YRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQP GTVHDILKKAGVF
Subjt:  YRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPIGTVHDILKKAGVF

A0A6H0ETM9 30S ribosomal protein S16, chloroplastic

3.3e-26

98.36

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Query:  YRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPIGTVHDILKKAGVF
        YRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQP GTVHDILKKAGVF
Subjt:  YRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPIGTVHDILKKAGVF

X2F3D0 30S ribosomal protein S16, chloroplastic

3.3e-26

98.36

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Query:  YRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPIGTVHDILKKAGVF
        YRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQP GTVHDILKKAGVF
Subjt:  YRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPIGTVHDILKKAGVF

X2F8C6 Ribosomal protein S16 (Fragment)

3.3e-26

98.36

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Query:  YRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPIGTVHDILKKAGVF
        YRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQP GTVHDILKKAGVF
Subjt:  YRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPIGTVHDILKKAGVF

SwissProt top hits

e value

%identity

Alignment

A0ZZ17 30S ribosomal protein S16, chloroplastic

6.4e-27

91.8

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Query:  YRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPIGTVHDILKKAGVF
        YRI+ IDVRSRREGRDLRKVGFYDPI NQTYLNVPAILYFLEKGAQP  TVHDILKKAGVF
Subjt:  YRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPIGTVHDILKKAGVF

Q1KXX7 30S ribosomal protein S16, chloroplastic

8.3e-27

93.44

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Query:  YRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPIGTVHDILKKAGVF
        YRI+AIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQP GTV DILKKA VF
Subjt:  YRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPIGTVHDILKKAGVF

Q2L8Y7 30S ribosomal protein S16, chloroplastic

2.2e-27

93.44

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Query:  YRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPIGTVHDILKKAGVF
        YRI+AIDVRSRREGRDLRKVGFYDPI NQTYLNVPAILYFLEKGAQP  TVHDILKKAGVF
Subjt:  YRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPIGTVHDILKKAGVF

Q2QDA6 30S ribosomal protein S16, chloroplastic

8.9e-29

98.36

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Query:  YRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPIGTVHDILKKAGVF
        YRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQP GTVHDILKKAGVF
Subjt:  YRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPIGTVHDILKKAGVF

Q6EW66 30S ribosomal protein S16, chloroplastic

3.7e-27

95.08

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Query:  YRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPIGTVHDILKKAGVF
        YRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQP GTVHDI KKA VF
Subjt:  YRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPIGTVHDILKKAGVF

Arabidopsis top hits

e value

%identity

Alignment

AT4G34620.1 small subunit ribosomal protein 16

2.3e-08

38.46

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Query:  YRIIAIDVRSRREGRDLRKVGFYDPIK-----NQTYLNVPAILYFLEKGAQPIGTVHDILKKAGV
        YR++  D +SRR+G+ +  +GFYDP++     ++  L    I Y+L  GAQP  TV  +L +AG+
Subjt:  YRIIAIDVRSRREGRDLRKVGFYDPIK-----NQTYLNVPAILYFLEKGAQPIGTVHDILKKAGV

AT5G56940.1 Ribosomal protein S16 family protein

5.4e-05

33.85

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Query:  YRIIAIDVRSRREGRDLRKVGFYDPIKNQ-----TYLNVPAILYFLEKGAQPIGTVHDILKKAGV
        +R++A D RS R+G+ L  +G+++P+  Q       L    I Y+L  GAQP   V  +L ++G+
Subjt:  YRIIAIDVRSRREGRDLRKVGFYDPIKNQ-----TYLNVPAILYFLEKGAQPIGTVHDILKKAGV

ATCG00050.1 ribosomal protein S16

4.9e-22

77.05

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Query:  YRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPIGTVHDILKKAGVF
        YRI+AIDVR RREGRDL KVGFYDPI NQT+LN+ AIL FL+KGAQP  T HDI KKAG+F
Subjt:  YRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPIGTVHDILKKAGVF

Sequences

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CDS sequence

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TATCGAATCATTGCAATTGATGTTCGATCCCGAAGAGAAGGAAGGGATCTTCGTAAAGTGGGTTTTTATGATCCGATAAAGAATCAAACCTATTTAAATGTTCCTGCTAT
TCTATATTTCCTTGAAAAAGGGGCTCAACCTATAGGAACTGTTCATGATATTTTAAAGAAGGCAGGGGTTTTT

mRNA sequence

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TATCGAATCATTGCAATTGATGTTCGATCCCGAAGAGAAGGAAGGGATCTTCGTAAAGTGGGTTTTTATGATCCGATAAAGAATCAAACCTATTTAAATGTTCCTGCTAT
TCTATATTTCCTTGAAAAAGGGGCTCAACCTATAGGAACTGTTCATGATATTTTAAAGAAGGCAGGGGTTTTT

Protein sequence

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YRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPIGTVHDILKKAGVF

MS023845 (gene) of Bitter gourd (TR) v1 genome