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MS023925 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS023925
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold251:342200..342448
RNA-Seq ExpressionMS023925
SyntenyMS023925
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022132681.1 uncharacterized protein LOC111005481 [Momordica charantia]1.9e-0759.57Show/hide
Query:  RLPDFCYHCGKIDHILKDCDDCFSVAGLISPYTKH-QYGPWLRYQGN
        RLPDF YHCG++DHILKDC DC      +   +K+ QYGPWLR+QG+
Subjt:  RLPDFCYHCGKIDHILKDCDDCFSVAGLISPYTKH-QYGPWLRYQGN

XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]2.8e-0644.44Show/hide
Query:  RLPDFCYHCGKIDHILKDCDDCFSVAGLISPYTKHQYGPWLRYQGNFKTLTAPMKKNTKFSQDSSESNSISASTTPHGANT
        RLPDFCYHC                 GL S   KHQYG WLRYQG  K     MK+  +   D S +NS S+ST+P GA +
Subjt:  RLPDFCYHCGKIDHILKDCDDCFSVAGLISPYTKHQYGPWLRYQGNFKTLTAPMKKNTKFSQDSSESNSISASTTPHGANT

TrEMBL top hitse value%identityAlignment
A0A2N9ENX3 Reverse transcriptase domain-containing protein2.8e-0441.56Show/hide
Query:  RLPDFCYHCGKIDHILKDCDDCFSVAGLISPYTKHQYGPWLRYQGNFKTLTAPMKKNTKFSQDSSESNSISASTTPH
        RLP FCY CGK++H  +DC    +  G +SP T+ QYGPWLR +            N  F +  S S+S  A  TPH
Subjt:  RLPDFCYHCGKIDHILKDCDDCFSVAGLISPYTKHQYGPWLRYQGNFKTLTAPMKKNTKFSQDSSESNSISASTTPH

A0A2N9IIR5 Uncharacterized protein4.3e-0548.94Show/hide
Query:  RLPDFCYHCGKIDHILKDCDDCFSVAGLISPYTKHQYGPWLRYQGNF
        RLP+FCY+CG++ H +KDCDD     G +     HQYG WLR   +F
Subjt:  RLPDFCYHCGKIDHILKDCDDCFSVAGLISPYTKHQYGPWLRYQGNF

A0A6J1BSZ1 uncharacterized protein LOC1110054819.2e-0859.57Show/hide
Query:  RLPDFCYHCGKIDHILKDCDDCFSVAGLISPYTKH-QYGPWLRYQGN
        RLPDF YHCG++DHILKDC DC      +   +K+ QYGPWLR+QG+
Subjt:  RLPDFCYHCGKIDHILKDCDDCFSVAGLISPYTKH-QYGPWLRYQGN

A0A6J1DU55 uncharacterized protein LOC1110231358.1e-0440.28Show/hide
Query:  RLPDFCYHCGKIDHILKDCDDCFSVAGLISPYTKHQYGPWLRYQGNFKTLTAPMKKNTKFSQDSSESNSISA
        RLPDFCY CG I H   DCD  +  A   S  T  +YGPWLR+ G+        K  +   +DS  S+S+++
Subjt:  RLPDFCYHCGKIDHILKDCDDCFSVAGLISPYTKHQYGPWLRYQGNFKTLTAPMKKNTKFSQDSSESNSISA

A0A6J1DX30 uncharacterized protein LOC1110248741.3e-0644.44Show/hide
Query:  RLPDFCYHCGKIDHILKDCDDCFSVAGLISPYTKHQYGPWLRYQGNFKTLTAPMKKNTKFSQDSSESNSISASTTPHGANT
        RLPDFCYHC                 GL S   KHQYG WLRYQG  K     MK+  +   D S +NS S+ST+P GA +
Subjt:  RLPDFCYHCGKIDHILKDCDDCFSVAGLISPYTKHQYGPWLRYQGNFKTLTAPMKKNTKFSQDSSESNSISASTTPHGANT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGCCTTCCAGATTTTTGTTATCATTGTGGTAAGATTGATCATATACTTAAAGACTGTGATGACTGCTTTTCTGTTGCAGGGCTTATTTCTCCATACACAAAGCACCA
ATATGGGCCATGGCTTCGCTACCAAGGAAATTTCAAAACTCTTACAGCCCCTATGAAAAAGAACACTAAGTTTTCCCAGGATAGCTCTGAAAGCAACTCAATTTCAGCTT
CTACAACCCCTCATGGTGCCAATACTTAG
mRNA sequenceShow/hide mRNA sequence
ATGCGCCTTCCAGATTTTTGTTATCATTGTGGTAAGATTGATCATATACTTAAAGACTGTGATGACTGCTTTTCTGTTGCAGGGCTTATTTCTCCATACACAAAGCACCA
ATATGGGCCATGGCTTCGCTACCAAGGAAATTTCAAAACTCTTACAGCCCCTATGAAAAAGAACACTAAGTTTTCCCAGGATAGCTCTGAAAGCAACTCAATTTCAGCTT
CTACAACCCCTCATGGTGCCAATACTTAG
Protein sequenceShow/hide protein sequence
MRLPDFCYHCGKIDHILKDCDDCFSVAGLISPYTKHQYGPWLRYQGNFKTLTAPMKKNTKFSQDSSESNSISASTTPHGANT