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MS024033 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS024033
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold64:1045051..1048556
RNA-Seq ExpressionMS024033
SyntenyMS024033
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ESR35143.1 hypothetical protein CICLE_v10007098mg, partial [Citrus clementina]1.7e-0430.23Show/hide
Query:  AICEGFKGLKEGGFYSSIAESDSLEVVRLLNGDAEDLIEIRWLINEVKFRALDAGVISIHHIARVGNDLAHEIARWAMVTERSLVW
        AI EG K  ++ G    + ESDS+ V+RL++      +EI W+I+E+        + ++ HI R  N +AH++ +  +    S +W
Subjt:  AICEGFKGLKEGGFYSSIAESDSLEVVRLLNGDAEDLIEIRWLINEVKFRALDAGVISIHHIARVGNDLAHEIARWAMVTERSLVW

ESR64134.1 hypothetical protein CICLE_v10010478mg, partial [Citrus clementina]6.9e-0636.05Show/hide
Query:  AICEGFKGLKEGGFYSSIAESDSLEVVRLLNGDAEDLIEIRWLINEVKFRALDAGVISIHHIARVGNDLAHEIARWAMVTERSLVW
        AI EG K ++E G    + ESDSL V+RL++      +EI W+I EV+       V ++ HI+R  N  AH +A+ A+      +W
Subjt:  AICEGFKGLKEGGFYSSIAESDSLEVVRLLNGDAEDLIEIRWLINEVKFRALDAGVISIHHIARVGNDLAHEIARWAMVTERSLVW

GAY45467.1 hypothetical protein CUMW_089680 [Citrus unshiu]1.2e-0536.05Show/hide
Query:  AICEGFKGLKEGGFYSSIAESDSLEVVRLLNGDAEDLIEIRWLINEVKFRALDAGVISIHHIARVGNDLAHEIARWAMVTERSLVW
        AI EG K ++E G    + ESDSL V+RL++      +EI W+I EV+       V ++ HI+R  N  AH +A+ A+      +W
Subjt:  AICEGFKGLKEGGFYSSIAESDSLEVVRLLNGDAEDLIEIRWLINEVKFRALDAGVISIHHIARVGNDLAHEIARWAMVTERSLVW

XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]1.1e-0640.51Show/hide
Query:  MAICEGFKGLKEGGFYSSIAESDSLEVVRLLNGDAEDLIEIRWLINEVKFRALDAGVISIHHIARVGNDLAHEIARWAM
        MAICEG + +++        ESDSLE + LL+   +D  EI WL+ E+     D  ++S+ HI+R  N +AH +AR AM
Subjt:  MAICEGFKGLKEGGFYSSIAESDSLEVVRLLNGDAEDLIEIRWLINEVKFRALDAGVISIHHIARVGNDLAHEIARWAM

XP_022156777.1 uncharacterized protein LOC111023608 [Momordica charantia]7.7e-0536.78Show/hide
Query:  MAICEGFKGLK--------EGGFYSSIAESDSLEVVRLLNGDAEDLIEIRWLINEVKFRALDAGVISIHHIARVGNDLAHEIARWAM
        MAICEG + ++        +        ESDSLE + LL+   +D  EI WL+ E+     D  ++S+ HI+R  N +AH++AR AM
Subjt:  MAICEGFKGLK--------EGGFYSSIAESDSLEVVRLLNGDAEDLIEIRWLINEVKFRALDAGVISIHHIARVGNDLAHEIARWAM

TrEMBL top hitse value%identityAlignment
A0A2H5NZB3 RNase H domain-containing protein5.7e-0636.05Show/hide
Query:  AICEGFKGLKEGGFYSSIAESDSLEVVRLLNGDAEDLIEIRWLINEVKFRALDAGVISIHHIARVGNDLAHEIARWAMVTERSLVW
        AI EG K ++E G    + ESDSL V+RL++      +EI W+I EV+       V ++ HI+R  N  AH +A+ A+      +W
Subjt:  AICEGFKGLKEGGFYSSIAESDSLEVVRLLNGDAEDLIEIRWLINEVKFRALDAGVISIHHIARVGNDLAHEIARWAMVTERSLVW

A0A6J1CP26 uncharacterized protein LOC1110134125.2e-0740.51Show/hide
Query:  MAICEGFKGLKEGGFYSSIAESDSLEVVRLLNGDAEDLIEIRWLINEVKFRALDAGVISIHHIARVGNDLAHEIARWAM
        MAICEG + +++        ESDSLE + LL+   +D  EI WL+ E+     D  ++S+ HI+R  N +AH +AR AM
Subjt:  MAICEGFKGLKEGGFYSSIAESDSLEVVRLLNGDAEDLIEIRWLINEVKFRALDAGVISIHHIARVGNDLAHEIARWAM

A0A6J1DSV1 uncharacterized protein LOC1110236083.7e-0536.78Show/hide
Query:  MAICEGFKGLK--------EGGFYSSIAESDSLEVVRLLNGDAEDLIEIRWLINEVKFRALDAGVISIHHIARVGNDLAHEIARWAM
        MAICEG + ++        +        ESDSLE + LL+   +D  EI WL+ E+     D  ++S+ HI+R  N +AH++AR AM
Subjt:  MAICEGFKGLK--------EGGFYSSIAESDSLEVVRLLNGDAEDLIEIRWLINEVKFRALDAGVISIHHIARVGNDLAHEIARWAM

V4RLS8 RNase H domain-containing protein (Fragment)8.3e-0530.23Show/hide
Query:  AICEGFKGLKEGGFYSSIAESDSLEVVRLLNGDAEDLIEIRWLINEVKFRALDAGVISIHHIARVGNDLAHEIARWAMVTERSLVW
        AI EG K  ++ G    + ESDS+ V+RL++      +EI W+I+E+        + ++ HI R  N +AH++ +  +    S +W
Subjt:  AICEGFKGLKEGGFYSSIAESDSLEVVRLLNGDAEDLIEIRWLINEVKFRALDAGVISIHHIARVGNDLAHEIARWAMVTERSLVW

V4WCI4 RNase H domain-containing protein (Fragment)3.4e-0636.05Show/hide
Query:  AICEGFKGLKEGGFYSSIAESDSLEVVRLLNGDAEDLIEIRWLINEVKFRALDAGVISIHHIARVGNDLAHEIARWAMVTERSLVW
        AI EG K ++E G    + ESDSL V+RL++      +EI W+I EV+       V ++ HI+R  N  AH +A+ A+      +W
Subjt:  AICEGFKGLKEGGFYSSIAESDSLEVVRLLNGDAEDLIEIRWLINEVKFRALDAGVISIHHIARVGNDLAHEIARWAMVTERSLVW

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTATTTGTGAAGGTTTTAAAGGTTTGAAAGAAGGAGGTTTTTACTCGAGTATAGCTGAATCGGACTCCCTCGAAGTGGTTCGTTTGCTGAATGGAGATGCTGAAGA
CCTCATTGAGATTCGATGGTTGATCAACGAGGTGAAATTTCGTGCTTTAGACGCCGGTGTAATTTCGATTCACCATATTGCGAGAGTTGGGAACGATTTGGCTCATGAAA
TTGCACGTTGGGCAATGGTTACAGAGAGATCGCTAGTGTGGGAGGCGTGTTCCCTGCAAACGAAGAACCCATTGTTCGACGCCGGAAAGGAGAAGCAGTTCAGCAAGAAT
GTGTCGCCTGAAATGTTGTTCGCCGACGGAAAATTAAGATCCGCCCCTGGGTGTCGTGCAACCTTTGTTCGTGTTCATTCCCTGCCGCAATCGCAAGCTCCACTGCTCCC
GCACCCTGCTGAAATTTGTTCAGAGCTTTTGCTATAG
mRNA sequenceShow/hide mRNA sequence
ATGGCTATTTGTGAAGGTTTTAAAGGTTTGAAAGAAGGAGGTTTTTACTCGAGTATAGCTGAATCGGACTCCCTCGAAGTGGTTCGTTTGCTGAATGGAGATGCTGAAGA
CCTCATTGAGATTCGATGGTTGATCAACGAGGTGAAATTTCGTGCTTTAGACGCCGGTGTAATTTCGATTCACCATATTGCGAGAGTTGGGAACGATTTGGCTCATGAAA
TTGCACGTTGGGCAATGGTTACAGAGAGATCGCTAGTGTGGGAGGCGTGTTCCCTGCAAACGAAGAACCCATTGTTCGACGCCGGAAAGGAGAAGCAGTTCAGCAAGAAT
GTGTCGCCTGAAATGTTGTTCGCCGACGGAAAATTAAGATCCGCCCCTGGGTGTCGTGCAACCTTTGTTCGTGTTCATTCCCTGCCGCAATCGCAAGCTCCACTGCTCCC
GCACCCTGCTGAAATTTGTTCAGAGCTTTTGCTATAG
Protein sequenceShow/hide protein sequence
MAICEGFKGLKEGGFYSSIAESDSLEVVRLLNGDAEDLIEIRWLINEVKFRALDAGVISIHHIARVGNDLAHEIARWAMVTERSLVWEACSLQTKNPLFDAGKEKQFSKN
VSPEMLFADGKLRSAPGCRATFVRVHSLPQSQAPLLPHPAEICSELLL