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MS024072 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS024072
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionTransposon Ty3-G Gag-Pol polyprotein
Genome locationscaffold414:96936..97166
RNA-Seq ExpressionMS024072
SyntenyMS024072
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039086.1 Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa]2.4e-0447.95Show/hide
Query:  MATGSDREREVEGERNFPAVWRAMADLKNRIDDRLTRFTR---EIQQNMEQLLANPRRAQPQNRH-EHPRARG
        M    DRE+E E E   PA+W+A+A + NR+D+   R  R   EIQ++M Q+ ANPR AQPQNR  + PR  G
Subjt:  MATGSDREREVEGERNFPAVWRAMADLKNRIDDRLTRFTR---EIQQNMEQLLANPRRAQPQNRH-EHPRARG
KAA0056127.1 uncharacterized protein E6C27_scaffold697G00040 [Cucumis melo var. makuwa]2.4e-0445Show/hide
Query:  MATGSDREREVEGERNFPAVWRAMADLKNRIDDRLTRFTR---EIQQNMEQLLANPRRAQPQNRHE-HPRARGVERRGGR
        MA    RE+E E   + PA+W+A A++ NR+D+   +  R   EIQ+++ Q+  N R  +PQN HE  P+ RGVERRGGR
Subjt:  MATGSDREREVEGERNFPAVWRAMADLKNRIDDRLTRFTR---EIQQNMEQLLANPRRAQPQNRHE-HPRARGVERRGGR
TrEMBL top hitse value%identityAlignment
A0A5A7TAL8 Transposon Ty3-G Gag-Pol polyprotein1.2e-0447.95Show/hide
Query:  MATGSDREREVEGERNFPAVWRAMADLKNRIDDRLTRFTR---EIQQNMEQLLANPRRAQPQNRH-EHPRARG
        M    DRE+E E E   PA+W+A+A + NR+D+   R  R   EIQ++M Q+ ANPR AQPQNR  + PR  G
Subjt:  MATGSDREREVEGERNFPAVWRAMADLKNRIDDRLTRFTR---EIQQNMEQLLANPRRAQPQNRH-EHPRARG
A0A5A7UNE4 Uncharacterized protein1.2e-0445Show/hide
Query:  MATGSDREREVEGERNFPAVWRAMADLKNRIDDRLTRFTR---EIQQNMEQLLANPRRAQPQNRHE-HPRARGVERRGGR
        MA    RE+E E   + PA+W+A A++ NR+D+   +  R   EIQ+++ Q+  N R  +PQN HE  P+ RGVERRGGR
Subjt:  MATGSDREREVEGERNFPAVWRAMADLKNRIDDRLTRFTR---EIQQNMEQLLANPRRAQPQNRHE-HPRARGVERRGGR
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGACTGGAAGTGATAGAGAACGAGAAGTTGAGGGAGAGCGGAATTTTCCAGCAGTGTGGCGAGCCATGGCAGATCTGAAAAATCGAATTGATGATCGTCTAACTCG
ATTCACTCGAGAAATCCAACAGAATATGGAGCAACTACTCGCCAATCCTAGAAGAGCACAACCTCAAAATCGCCATGAACATCCACGAGCTCGAGGGGTTGAACGTAGGG
GTGGTCGGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCGACTGGAAGTGATAGAGAACGAGAAGTTGAGGGAGAGCGGAATTTTCCAGCAGTGTGGCGAGCCATGGCAGATCTGAAAAATCGAATTGATGATCGTCTAACTCG
ATTCACTCGAGAAATCCAACAGAATATGGAGCAACTACTCGCCAATCCTAGAAGAGCACAACCTCAAAATCGCCATGAACATCCACGAGCTCGAGGGGTTGAACGTAGGG
GTGGTCGGTGA
Protein sequenceShow/hide protein sequence
MATGSDREREVEGERNFPAVWRAMADLKNRIDDRLTRFTREIQQNMEQLLANPRRAQPQNRHEHPRARGVERRGGR