; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS024085 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS024085
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionCCHC-type domain-containing protein
Genome locationscaffold26:154198..155385
RNA-Seq ExpressionMS024085
SyntenyMS024085
Gene Ontology termsNA
InterPro domainsIPR036691 - Endonuclease/exonuclease/phosphatase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF4351405.1 hypothetical protein F8388_001025, partial [Cannabis sativa]8.6e-2947.55Show/hide
Query:  VKRTIRYDNCFNVPSNGNSGGLMLLWKAEIDVHIMSYSVGHIDAIIKEHDRN-WRFTGVYGHPVTERRSESWTLIKRLHSISNLPWIFGGDF-KITSESE
        ++R I + N F+V   G SGGL+LLW  + +V + S+SVGHIDA++K    N WRFTG YG+P    R +SW L+ RL  + +LPWI GGDF +I S +E
Subjt:  VKRTIRYDNCFNVPSNGNSGGLMLLWKAEIDVHIMSYSVGHIDAIIKEHDRN-WRFTGVYGHPVTERRSESWTLIKRLHSISNLPWIFGGDF-KITSESE

Query:  KEGGADRRHSEMNNFKEMLDLCSLMDAGFNGDQFTCTSIIRGV
        K+GG DR  S +++F++ LD C L+D GF G  FT  +  +GV
Subjt:  KEGGADRRHSEMNNFKEMLDLCSLMDAGFNGDQFTCTSIIRGV

KAF4372682.1 hypothetical protein F8388_000849, partial [Cannabis sativa]1.9e-2846.85Show/hide
Query:  VKRTIRYDNCFNVPSNGNSGGLMLLWKAEIDVHIMSYSVGHIDAIIKEHDRN-WRFTGVYGHPVTERRSESWTLIKRLHSISNLPWIFGGDF-KITSESE
        ++R I + N F+V   G SGGL+LLW  + +V + S+SVGHIDA++K    N WRFTG YG+P    R  SW L+ RL  + +LPWI GGDF ++ S +E
Subjt:  VKRTIRYDNCFNVPSNGNSGGLMLLWKAEIDVHIMSYSVGHIDAIIKEHDRN-WRFTGVYGHPVTERRSESWTLIKRLHSISNLPWIFGGDF-KITSESE

Query:  KEGGADRRHSEMNNFKEMLDLCSLMDAGFNGDQFTCTSIIRGV
        K+GG DR  S +++F++ LD C L+D GF G  FT  +  +GV
Subjt:  KEGGADRRHSEMNNFKEMLDLCSLMDAGFNGDQFTCTSIIRGV

XP_023912780.1 uncharacterized protein LOC112024376, partial [Quercus suber]1.9e-2846.32Show/hide
Query:  IVKRTIRYDNCFNVPSNGNSGGLMLLWKAEIDVHIMSYSVGHIDAIIK-EHDRNWRFTGVYGHPVTERRSESWTLIKRLHSISNLPWIFGGDF-KITSES
        IVKR + +D  F VP     GGL+L WK  +++ + + S  HID II+   +  WRFTG YG PVT +R ESW L+++LHS  NLPW+  GDF +I   +
Subjt:  IVKRTIRYDNCFNVPSNGNSGGLMLLWKAEIDVHIMSYSVGHIDAIIK-EHDRNWRFTGVYGHPVTERRSESWTLIKRLHSISNLPWIFGGDF-KITSES

Query:  EKEGGADRRHSEMNNFKEMLDLCSLMDAGFNGDQFT
        EK+GG++R HS+M  F++ +D C  +D GF G+ FT
Subjt:  EKEGGADRRHSEMNNFKEMLDLCSLMDAGFNGDQFT

XP_024021734.1 uncharacterized protein LOC112091706 [Morus notabilis]3.5e-3046.36Show/hide
Query:  IGFPHGNQVRNKLNDIVKRTIRYDNCFNVPSNGNSGGLMLLWKAEIDVHIMSYSVGHIDAIIK-EHDRNWRFTGVYGHPVTERRSESWTLIKRLHSISNL
        + F    ++R+K  + VKR   +   F V  +G SGGLML+WK E++VHI SYS  HID  ++  H   WRFTG YG+P    R  SWTL+ RL S+SNL
Subjt:  IGFPHGNQVRNKLNDIVKRTIRYDNCFNVPSNGNSGGLMLLWKAEIDVHIMSYSVGHIDAIIK-EHDRNWRFTGVYGHPVTERRSESWTLIKRLHSISNL

Query:  PWIFGGDF-KITSESEKEGGADRRHSEMNNFKEMLDLCSLMDAGFNGDQFT
        PW+  GDF +I   S+KEGG +R +  MN F++ ++ C L+D GF G +FT
Subjt:  PWIFGGDF-KITSESEKEGGADRRHSEMNNFKEMLDLCSLMDAGFNGDQFT

XP_042988712.1 uncharacterized protein LOC122316247 [Carya illinoinensis]1.7e-2947.1Show/hide
Query:  DIVKRTIRYDNCFNVPSNGNSGGLMLLWKAEIDVHIMSYSVGHIDAII--KEHDRNWRFTGVYGHPVTERRSESWTLIKRLHSISNLPWIFGGDF-KITS
        + VKR + Y+ CF V S G SGGL L+W+ E ++++ SYS  HIDA+I   EHD  W+FTGVYGHP TE R E+W  I+ L    ++PW+  GDF ++  
Subjt:  DIVKRTIRYDNCFNVPSNGNSGGLMLLWKAEIDVHIMSYSVGHIDAII--KEHDRNWRFTGVYGHPVTERRSESWTLIKRLHSISNLPWIFGGDF-KITS

Query:  ESEKEGGADRRHSEMNNFKEMLDLCSLMDAGFNGDQFT
          EK GG +R   +M  F+++LD CS +D GF G  FT
Subjt:  ESEKEGGADRRHSEMNNFKEMLDLCSLMDAGFNGDQFT

TrEMBL top hitse value%identityAlignment
A0A5C7H9Y2 CCHC-type domain-containing protein2.3e-2734.93Show/hide
Query:  QFPLAGSKHQLTMDRIGPDGKKICTTEAKENSFILSVEAAEQPRRSQXKPXVGMFEDWKSSNITGTTTCGA--QXQSPIGFPHGNQVRNKLNDIVKRTIR
        Q   + SK ++T D    + K++ TT    N  ++    + Q      +   G   + K         CG+  +    +G   G+    + +D  K ++ 
Subjt:  QFPLAGSKHQLTMDRIGPDGKKICTTEAKENSFILSVEAAEQPRRSQXKPXVGMFEDWKSSNITGTTTCGA--QXQSPIGFPHGNQVRNKLNDIVKRTIR

Query:  YDNCFNVPSNGNSGGLMLLWKAEIDVHIMSYSVGHIDAIIKEHDR-NWRFTGVYGHPVTERRSESWTLIKRLHSISNLPWIFGGDF-KITSESEKEGGAD
            F V   G  GGL LLWK +I+V I S++ GHIDA+IK+ D   WRFTG YG P+   R  SW+L++RL  +SNLPWI  GDF +I    EK+GG  
Subjt:  YDNCFNVPSNGNSGGLMLLWKAEIDVHIMSYSVGHIDAIIKEHDR-NWRFTGVYGHPVTERRSESWTLIKRLHSISNLPWIFGGDF-KITSESEKEGGAD

Query:  RRHSEMNNFKEMLDLCSLMDAGFNGDQFT
        R ++ M++F+E +D C+LMD G+ G+++T
Subjt:  RRHSEMNNFKEMLDLCSLMDAGFNGDQFT

A0A5C7I4W9 RNase H domain-containing protein2.7e-2842.96Show/hide
Query:  VKRTIRYDNCFNVPSNGNSGGLMLLWKAEIDVHIMSYSVGHIDAIIKE-HDRNWRFTGVYGHPVTERRSESWTLIKRLHSISNLPWIFGGDF-KITSESE
        ++  + Y+  F V S+G SGGL+LLWK    V ++SYS GHIDA I E +   WRF+G+YG P    R  +WTL++RL  + NLPW+ GGDF ++ S SE
Subjt:  VKRTIRYDNCFNVPSNGNSGGLMLLWKAEIDVHIMSYSVGHIDAIIKE-HDRNWRFTGVYGHPVTERRSESWTLIKRLHSISNLPWIFGGDF-KITSESE

Query:  KEGGADRRHSEMNNFKEMLDLCSLMDAGFNGDQFTCTSIIRG
        K GG+++   ++  F++++D C  +D GF+G +FT  ++  G
Subjt:  KEGGADRRHSEMNNFKEMLDLCSLMDAGFNGDQFTCTSIIRG

A0A7J6DZ24 CCHC-type domain-containing protein4.1e-2947.55Show/hide
Query:  VKRTIRYDNCFNVPSNGNSGGLMLLWKAEIDVHIMSYSVGHIDAIIKEHDRN-WRFTGVYGHPVTERRSESWTLIKRLHSISNLPWIFGGDF-KITSESE
        ++R I + N F+V   G SGGL+LLW  + +V + S+SVGHIDA++K    N WRFTG YG+P    R +SW L+ RL  + +LPWI GGDF +I S +E
Subjt:  VKRTIRYDNCFNVPSNGNSGGLMLLWKAEIDVHIMSYSVGHIDAIIKEHDRN-WRFTGVYGHPVTERRSESWTLIKRLHSISNLPWIFGGDF-KITSESE

Query:  KEGGADRRHSEMNNFKEMLDLCSLMDAGFNGDQFTCTSIIRGV
        K+GG DR  S +++F++ LD C L+D GF G  FT  +  +GV
Subjt:  KEGGADRRHSEMNNFKEMLDLCSLMDAGFNGDQFTCTSIIRGV

A0A7J6FPV7 CCHC-type domain-containing protein9.2e-2946.85Show/hide
Query:  VKRTIRYDNCFNVPSNGNSGGLMLLWKAEIDVHIMSYSVGHIDAIIKEHDRN-WRFTGVYGHPVTERRSESWTLIKRLHSISNLPWIFGGDF-KITSESE
        ++R I + N F+V   G SGGL+LLW  + +V + S+SVGHIDA++K    N WRFTG YG+P    R  SW L+ RL  + +LPWI GGDF ++ S +E
Subjt:  VKRTIRYDNCFNVPSNGNSGGLMLLWKAEIDVHIMSYSVGHIDAIIKEHDRN-WRFTGVYGHPVTERRSESWTLIKRLHSISNLPWIFGGDF-KITSESE

Query:  KEGGADRRHSEMNNFKEMLDLCSLMDAGFNGDQFTCTSIIRGV
        K+GG DR  S +++F++ LD C L+D GF G  FT  +  +GV
Subjt:  KEGGADRRHSEMNNFKEMLDLCSLMDAGFNGDQFTCTSIIRGV

A0A7N2LJY2 Uncharacterized protein7.1e-2949.64Show/hide
Query:  DIVKRTIRYDNCFNVPSNGNSGGLMLLWKAEIDVHIMSYSVGHIDAIIK-EHDRNWRFTGVYGHPVTERRSESWTLIKRLHSISNLPWIFGGDF-KITSE
        + V+    + N   VPS+G+SGGL L W+ EI VHI +YS  HIDA +    D  W  TG YG+P T RR ESW+ +K L + S LPW+  GDF ++   
Subjt:  DIVKRTIRYDNCFNVPSNGNSGGLMLLWKAEIDVHIMSYSVGHIDAIIK-EHDRNWRFTGVYGHPVTERRSESWTLIKRLHSISNLPWIFGGDF-KITSE

Query:  SEKEGGADRRHSEMNNFKEMLDLCSLMDAGFNGDQFT
        SEKEGGA R  S+M  FKE++D+C L D GF G QFT
Subjt:  SEKEGGADRRHSEMNNFKEMLDLCSLMDAGFNGDQFT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTGGAGAAAGATCACGATTTACTGAACCCCTCAGTCAGCGATACGGCGGTGCTGAATTCTGGTGGACGGCAATCCAAATTAGGAAATGAAGGATCGAAAGGAGAAGA
TCGTGGCACTGAAAAGGAAATACAACAATTAAATGAAGATTTCACAATTGCTGATTTTGAGGATTCAAATTGTAAAGAAAATCAAATAAATGGATCCAATAGCCATCATC
CACCAGTTCAGCAAATTCTAATTGATAAAGGTAAAAATGTTATGGGCCAAAAAAGAGAAGCCCAAAATGATTTATTTCATCAAGAAAGGCTTTCCAACACTCAAGTGGGC
TGTGAAGCCGAGGCAACCCAACCAAAATTCATATTAGCAACAAAAGGAAAATTGATGGAGGTTATCAGTCACGGGAAATGGGAGAGAGTAGTAAGAGGCGAAAATAAAGC
AGCAGGAAACAGTATGGATATTCCAGAGTTTCAATTCCCTTTAGCTGGGAGTAAGCATCAACTCACAATGGACAGAATTGGGCCTGATGGAAAGAAAATCTGCACTACTG
AAGCGAAAGAAAACAGCTTTATTCTATCGGTGGAGGCTGCTGAACAGCCCCGCCGAAGCCAATGAAAACCTTAAGTTGGAATGTTCGAAGATTGGAAATCCTCGAACATT
ACGGGCACTACAACATGTGGTGCTCAATAGCAATCCCCAATTGGTTTTCCTCATGGAAACCAAGTGCGAAACAAGCTGAATGATATAGTGAAAAGAACGATCCGTTATGA
TAATTGTTTTAATGTCCCAAGCAATGGAAACAGCGGCGGTCTCATGCTTCTTTGGAAGGCTGAAATAGATGTGCACATCATGTCGTATTCTGTAGGTCACATCGATGCTA
TTATCAAAGAACATGATCGGAATTGGAGATTTACAGGTGTCTATGGTCATCCGGTTACTGAAAGACGTTCAGAGTCATGGACTCTCATTAAGAGACTTCACAGTATCTCA
AACCTCCCTTGGATTTTCGGTGGGGACTTCAAAATTACTTCCGAGAGTGAAAAGGAAGGGGGAGCTGATAGGAGACATTCTGAGATGAATAATTTCAAGGAAATGCTTGA
TCTTTGCAGCCTCATGGATGCTGGTTTTAATGGTGATCAATTCACCTGTACTAGCATTATCAGGGGGGTTATATTTGGGAAAGATTAG
mRNA sequenceShow/hide mRNA sequence
ATGCTGGAGAAAGATCACGATTTACTGAACCCCTCAGTCAGCGATACGGCGGTGCTGAATTCTGGTGGACGGCAATCCAAATTAGGAAATGAAGGATCGAAAGGAGAAGA
TCGTGGCACTGAAAAGGAAATACAACAATTAAATGAAGATTTCACAATTGCTGATTTTGAGGATTCAAATTGTAAAGAAAATCAAATAAATGGATCCAATAGCCATCATC
CACCAGTTCAGCAAATTCTAATTGATAAAGGTAAAAATGTTATGGGCCAAAAAAGAGAAGCCCAAAATGATTTATTTCATCAAGAAAGGCTTTCCAACACTCAAGTGGGC
TGTGAAGCCGAGGCAACCCAACCAAAATTCATATTAGCAACAAAAGGAAAATTGATGGAGGTTATCAGTCACGGGAAATGGGAGAGAGTAGTAAGAGGCGAAAATAAAGC
AGCAGGAAACAGTATGGATATTCCAGAGTTTCAATTCCCTTTAGCTGGGAGTAAGCATCAACTCACAATGGACAGAATTGGGCCTGATGGAAAGAAAATCTGCACTACTG
AAGCGAAAGAAAACAGCTTTATTCTATCGGTGGAGGCTGCTGAACAGCCCCGCCGAAGCCAATGAAAACCTTAAGTTGGAATGTTCGAAGATTGGAAATCCTCGAACATT
ACGGGCACTACAACATGTGGTGCTCAATAGCAATCCCCAATTGGTTTTCCTCATGGAAACCAAGTGCGAAACAAGCTGAATGATATAGTGAAAAGAACGATCCGTTATGA
TAATTGTTTTAATGTCCCAAGCAATGGAAACAGCGGCGGTCTCATGCTTCTTTGGAAGGCTGAAATAGATGTGCACATCATGTCGTATTCTGTAGGTCACATCGATGCTA
TTATCAAAGAACATGATCGGAATTGGAGATTTACAGGTGTCTATGGTCATCCGGTTACTGAAAGACGTTCAGAGTCATGGACTCTCATTAAGAGACTTCACAGTATCTCA
AACCTCCCTTGGATTTTCGGTGGGGACTTCAAAATTACTTCCGAGAGTGAAAAGGAAGGGGGAGCTGATAGGAGACATTCTGAGATGAATAATTTCAAGGAAATGCTTGA
TCTTTGCAGCCTCATGGATGCTGGTTTTAATGGTGATCAATTCACCTGTACTAGCATTATCAGGGGGGTTATATTTGGGAAAGATTAG
Protein sequenceShow/hide protein sequence
MLEKDHDLLNPSVSDTAVLNSGGRQSKLGNEGSKGEDRGTEKEIQQLNEDFTIADFEDSNCKENQINGSNSHHPPVQQILIDKGKNVMGQKREAQNDLFHQERLSNTQVG
CEAEATQPKFILATKGKLMEVISHGKWERVVRGENKAAGNSMDIPEFQFPLAGSKHQLTMDRIGPDGKKICTTEAKENSFILSVEAAEQPRRSQUKPUVGMFEDWKSSNI
TGTTTCGAQUQSPIGFPHGNQVRNKLNDIVKRTIRYDNCFNVPSNGNSGGLMLLWKAEIDVHIMSYSVGHIDAIIKEHDRNWRFTGVYGHPVTERRSESWTLIKRLHSIS
NLPWIFGGDFKITSESEKEGGADRRHSEMNNFKEMLDLCSLMDAGFNGDQFTCTSIIRGVIFGKD