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MS024086 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS024086
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold26:158666..158950
RNA-Seq ExpressionMS024086
SyntenyMS024086
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]1.2e-0845.45Show/hide
Query:  CWPLYLESDSLEALRLIKKEDTNLTEICWLVEEVSKLVEEKNVIAINHICREKNNAAHVLAKKAME
        C P++LESDSLEA+ L+ ++  + TEI WL+EE+ +++++  ++++ HI RE N  AH LA++AME
Subjt:  CWPLYLESDSLEALRLIKKEDTNLTEICWLVEEVSKLVEEKNVIAINHICREKNNAAHVLAKKAME

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]2.6e-0837.93Show/hide
Query:  PLYLESDSLEALRLIKKEDTNLTEICWLVEEVSKLVEEKNVIAINHICREKNNAAHVLAKKAMEIEGERRWMVTFPNWLSIAMESVP
        PL++E+DS E   L+ ++  +LT+  W+VEE+  L +   ++A   + RE N  AH LA++A  +     W+  FPNWLSI  +S P
Subjt:  PLYLESDSLEALRLIKKEDTNLTEICWLVEEVSKLVEEKNVIAINHICREKNNAAHVLAKKAMEIEGERRWMVTFPNWLSIAMESVP

XP_022156777.1 uncharacterized protein LOC111023608 [Momordica charantia]4.0e-0946.97Show/hide
Query:  CWPLYLESDSLEALRLIKKEDTNLTEICWLVEEVSKLVEEKNVIAINHICREKNNAAHVLAKKAME
        C P++LESDSLEA+ L+ ++  + TEI WL+EE+ +++E+  ++++ HI RE N  AH LA++AME
Subjt:  CWPLYLESDSLEALRLIKKEDTNLTEICWLVEEVSKLVEEKNVIAINHICREKNNAAHVLAKKAME

XP_024041100.1 uncharacterized protein LOC112098855 isoform X1 [Citrus clementina]7.0e-0637.18Show/hide
Query:  CWPLYLESDSLEALRLIKKEDTNLTEICWLVEEVSKLVEEKNVIAINHICREKNNAAHVLAKKAMEIEGERRWMVTFP
        C P+ +ESDSLE + L  +  +++ EICW VEE+   ++ ++  +I  + R  N  AH LAK A++ E    W+  FP
Subjt:  CWPLYLESDSLEALRLIKKEDTNLTEICWLVEEVSKLVEEKNVIAINHICREKNNAAHVLAKKAMEIEGERRWMVTFP

XP_024041104.1 uncharacterized protein LOC112098855 isoform X3 [Citrus clementina]7.0e-0637.18Show/hide
Query:  CWPLYLESDSLEALRLIKKEDTNLTEICWLVEEVSKLVEEKNVIAINHICREKNNAAHVLAKKAMEIEGERRWMVTFP
        C P+ +ESDSLE + L  +  +++ EICW VEE+   ++ ++  +I  + R  N  AH LAK A++ E    W+  FP
Subjt:  CWPLYLESDSLEALRLIKKEDTNLTEICWLVEEVSKLVEEKNVIAINHICREKNNAAHVLAKKAMEIEGERRWMVTFP

TrEMBL top hitse value%identityAlignment
A0A1S8ADA4 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (Fragment)8.4e-0535.06Show/hide
Query:  WPLYLESDSLEALRLIKKEDTNLTEICWLVEEVSKLVEEKNVIAINHICREKNNAAHVLAKKAMEIEGERRWMVTFP
        +P+ +ESDS E + L  K+  + TEI W + E+   +E +NV +++++ R  N+ AH +AK A+  E +  W+  FP
Subjt:  WPLYLESDSLEALRLIKKEDTNLTEICWLVEEVSKLVEEKNVIAINHICREKNNAAHVLAKKAMEIEGERRWMVTFP

A0A6J1CP26 uncharacterized protein LOC1110134125.6e-0945.45Show/hide
Query:  CWPLYLESDSLEALRLIKKEDTNLTEICWLVEEVSKLVEEKNVIAINHICREKNNAAHVLAKKAME
        C P++LESDSLEA+ L+ ++  + TEI WL+EE+ +++++  ++++ HI RE N  AH LA++AME
Subjt:  CWPLYLESDSLEALRLIKKEDTNLTEICWLVEEVSKLVEEKNVIAINHICREKNNAAHVLAKKAME

A0A6J1DNV9 uncharacterized protein LOC1110224031.3e-0837.93Show/hide
Query:  PLYLESDSLEALRLIKKEDTNLTEICWLVEEVSKLVEEKNVIAINHICREKNNAAHVLAKKAMEIEGERRWMVTFPNWLSIAMESVP
        PL++E+DS E   L+ ++  +LT+  W+VEE+  L +   ++A   + RE N  AH LA++A  +     W+  FPNWLSI  +S P
Subjt:  PLYLESDSLEALRLIKKEDTNLTEICWLVEEVSKLVEEKNVIAINHICREKNNAAHVLAKKAMEIEGERRWMVTFPNWLSIAMESVP

A0A6J1DSV1 uncharacterized protein LOC1110236081.9e-0946.97Show/hide
Query:  CWPLYLESDSLEALRLIKKEDTNLTEICWLVEEVSKLVEEKNVIAINHICREKNNAAHVLAKKAME
        C P++LESDSLEA+ L+ ++  + TEI WL+EE+ +++E+  ++++ HI RE N  AH LA++AME
Subjt:  CWPLYLESDSLEALRLIKKEDTNLTEICWLVEEVSKLVEEKNVIAINHICREKNNAAHVLAKKAME

V4WCI4 RNase H domain-containing protein (Fragment)2.2e-0538.89Show/hide
Query:  PLYLESDSLEALRLIKKEDTNLTEICWLVEEVSKLVEEKNVIAINHICREKNNAAHVLAKKAMEIEGERRWM
        PL +ESDSL  +RL+ K  ++  EI W++ EV + + + +V A+ HI R +N+AAH +AK A+       W+
Subjt:  PLYLESDSLEALRLIKKEDTNLTEICWLVEEVSKLVEEKNVIAINHICREKNNAAHVLAKKAMEIEGERRWM

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACACTTGCTGGCCTCTTTACTTGGAATCTGATTCTTTGGAAGCACTTCGTCTCATCAAGAAAGAAGATACTAACCTAACTGAGATTTGTTGGCTGGTGGAAGAAGT
ATCCAAGTTGGTGGAAGAGAAGAATGTCATAGCAATTAACCACATCTGTAGGGAGAAGAACAATGCGGCCCACGTCTTAGCAAAAAAGGCGATGGAAATCGAAGGAGAAA
GGAGGTGGATGGTCACGTTCCCAAATTGGCTTTCTATTGCAATGGAATCTGTTCCCTTGTTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGAACACTTGCTGGCCTCTTTACTTGGAATCTGATTCTTTGGAAGCACTTCGTCTCATCAAGAAAGAAGATACTAACCTAACTGAGATTTGTTGGCTGGTGGAAGAAGT
ATCCAAGTTGGTGGAAGAGAAGAATGTCATAGCAATTAACCACATCTGTAGGGAGAAGAACAATGCGGCCCACGTCTTAGCAAAAAAGGCGATGGAAATCGAAGGAGAAA
GGAGGTGGATGGTCACGTTCCCAAATTGGCTTTCTATTGCAATGGAATCTGTTCCCTTGTTTTAA
Protein sequenceShow/hide protein sequence
MNTCWPLYLESDSLEALRLIKKEDTNLTEICWLVEEVSKLVEEKNVIAINHICREKNNAAHVLAKKAMEIEGERRWMVTFPNWLSIAMESVPLF