; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS024105 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS024105
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionProtein FAR1-RELATED SEQUENCE
Genome locationscaffold1574:213300..214140
RNA-Seq ExpressionMS024105
SyntenyMS024105
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0009639 - response to red or far red light (biological process)
GO:0048518 - positive regulation of biological process (biological process)
GO:0005634 - nucleus (cellular component)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022133628.1 protein FAR1-RELATED SEQUENCE 2 isoform X1 [Momordica charantia]4.8e-61100Show/hide
Query:  KITKRARVKSSEVEVDSRAAALDGCHSCQENMLGSGLSNSNSPFCDGPEGYYSHQAMQSLDQSPSVVAHVGLHSDGQTMQSQGQLNLDVQRRLDIEDNRQ
        KITKRARVKSSEVEVDSRAAALDGCHSCQENMLGSGLSNSNSPFCDGPEGYYSHQAMQSLDQSPSVVAHVGLHSDGQTMQSQGQLNLDVQRRLDIEDNRQ
Subjt:  KITKRARVKSSEVEVDSRAAALDGCHSCQENMLGSGLSNSNSPFCDGPEGYYSHQAMQSLDQSPSVVAHVGLHSDGQTMQSQGQLNLDVQRRLDIEDNRQ

Query:  DMEQPDDALSQTHINNSSGRTRQP
        DMEQPDDALSQTHINNSSGRTRQP
Subjt:  DMEQPDDALSQTHINNSSGRTRQP

XP_022133660.1 protein FAR1-RELATED SEQUENCE 2 isoform X2 [Momordica charantia]1.3e-5898.39Show/hide
Query:  KITKRARVKSSEVEVDSRAAALDGCHSCQENMLGSGLSNSNSPFCDGPEGYYSHQAMQSLDQSPSVVAHVGLHSDGQTMQSQGQLNLDVQRRLDIEDNRQ
        KITKRARVKSSEVEVDSRAAALDGCHSCQENMLGSGLSNSNSPFCDGPEGYYSHQAMQSLDQSPSVVAHVGLHSDGQTMQSQGQLNLDVQRRLDIEDNRQ
Subjt:  KITKRARVKSSEVEVDSRAAALDGCHSCQENMLGSGLSNSNSPFCDGPEGYYSHQAMQSLDQSPSVVAHVGLHSDGQTMQSQGQLNLDVQRRLDIEDNRQ

Query:  DMEQPDDALSQTHINNSSGRTRQP
        DM  PDDALSQTHINNSSGRTRQP
Subjt:  DMEQPDDALSQTHINNSSGRTRQP

XP_022133668.1 protein FAR1-RELATED SEQUENCE 2 isoform X3 [Momordica charantia]8.8e-5590.32Show/hide
Query:  KITKRARVKSSEVEVDSRAAALDGCHSCQENMLGSGLSNSNSPFCDGPEGYYSHQAMQSLDQSPSVVAHVGLHSDGQTMQSQGQLNLDVQRRLDIEDNRQ
        K +++ +      EVDSRAAALDGCHSCQENMLGSGLSNSNSPFCDGPEGYYSHQAMQSLDQSPSVVAHVGLHSDGQTMQSQGQLNLDVQRRLDIEDNRQ
Subjt:  KITKRARVKSSEVEVDSRAAALDGCHSCQENMLGSGLSNSNSPFCDGPEGYYSHQAMQSLDQSPSVVAHVGLHSDGQTMQSQGQLNLDVQRRLDIEDNRQ

Query:  DMEQPDDALSQTHINNSSGRTRQP
        DMEQPDDALSQTHINNSSGRTRQP
Subjt:  DMEQPDDALSQTHINNSSGRTRQP

XP_038898406.1 protein FAR1-RELATED SEQUENCE 2 isoform X1 [Benincasa hispida]6.5e-3469.75Show/hide
Query:  KITKRARVKSSEVEVDSRAAALDGCHSCQENMLGSGLSNSNSPFCDGPEGYYSHQAMQSLDQSPSVVAHVGLHSDGQTMQSQGQLN---LDVQRRLDIED
        K+TK+AR KS E+EVD RAAALD  H    ++ GSG S++NSPFCDGPEGYYSHQAMQ+LD SPS+VAHVG +S+ QTMQSQGQLN   L  Q R D+ED
Subjt:  KITKRARVKSSEVEVDSRAAALDGCHSCQENMLGSGLSNSNSPFCDGPEGYYSHQAMQSLDQSPSVVAHVGLHSDGQTMQSQGQLN---LDVQRRLDIED

Query:  NRQDMEQPDDALSQTHINN
        N QD+EQPDDAL+QTHINN
Subjt:  NRQDMEQPDDALSQTHINN

XP_038898407.1 protein FAR1-RELATED SEQUENCE 2 isoform X2 [Benincasa hispida]6.5e-3469.75Show/hide
Query:  KITKRARVKSSEVEVDSRAAALDGCHSCQENMLGSGLSNSNSPFCDGPEGYYSHQAMQSLDQSPSVVAHVGLHSDGQTMQSQGQLN---LDVQRRLDIED
        K+TK+AR KS E+EVD RAAALD  H    ++ GSG S++NSPFCDGPEGYYSHQAMQ+LD SPS+VAHVG +S+ QTMQSQGQLN   L  Q R D+ED
Subjt:  KITKRARVKSSEVEVDSRAAALDGCHSCQENMLGSGLSNSNSPFCDGPEGYYSHQAMQSLDQSPSVVAHVGLHSDGQTMQSQGQLN---LDVQRRLDIED

Query:  NRQDMEQPDDALSQTHINN
        N QD+EQPDDAL+QTHINN
Subjt:  NRQDMEQPDDALSQTHINN

TrEMBL top hitse value%identityAlignment
A0A6J1BVU3 Protein FAR1-RELATED SEQUENCE2.3e-61100Show/hide
Query:  KITKRARVKSSEVEVDSRAAALDGCHSCQENMLGSGLSNSNSPFCDGPEGYYSHQAMQSLDQSPSVVAHVGLHSDGQTMQSQGQLNLDVQRRLDIEDNRQ
        KITKRARVKSSEVEVDSRAAALDGCHSCQENMLGSGLSNSNSPFCDGPEGYYSHQAMQSLDQSPSVVAHVGLHSDGQTMQSQGQLNLDVQRRLDIEDNRQ
Subjt:  KITKRARVKSSEVEVDSRAAALDGCHSCQENMLGSGLSNSNSPFCDGPEGYYSHQAMQSLDQSPSVVAHVGLHSDGQTMQSQGQLNLDVQRRLDIEDNRQ

Query:  DMEQPDDALSQTHINNSSGRTRQP
        DMEQPDDALSQTHINNSSGRTRQP
Subjt:  DMEQPDDALSQTHINNSSGRTRQP

A0A6J1BVV3 Protein FAR1-RELATED SEQUENCE6.3e-5998.39Show/hide
Query:  KITKRARVKSSEVEVDSRAAALDGCHSCQENMLGSGLSNSNSPFCDGPEGYYSHQAMQSLDQSPSVVAHVGLHSDGQTMQSQGQLNLDVQRRLDIEDNRQ
        KITKRARVKSSEVEVDSRAAALDGCHSCQENMLGSGLSNSNSPFCDGPEGYYSHQAMQSLDQSPSVVAHVGLHSDGQTMQSQGQLNLDVQRRLDIEDNRQ
Subjt:  KITKRARVKSSEVEVDSRAAALDGCHSCQENMLGSGLSNSNSPFCDGPEGYYSHQAMQSLDQSPSVVAHVGLHSDGQTMQSQGQLNLDVQRRLDIEDNRQ

Query:  DMEQPDDALSQTHINNSSGRTRQP
        DM  PDDALSQTHINNSSGRTRQP
Subjt:  DMEQPDDALSQTHINNSSGRTRQP

A0A6J1BZS3 Protein FAR1-RELATED SEQUENCE4.2e-5590.32Show/hide
Query:  KITKRARVKSSEVEVDSRAAALDGCHSCQENMLGSGLSNSNSPFCDGPEGYYSHQAMQSLDQSPSVVAHVGLHSDGQTMQSQGQLNLDVQRRLDIEDNRQ
        K +++ +      EVDSRAAALDGCHSCQENMLGSGLSNSNSPFCDGPEGYYSHQAMQSLDQSPSVVAHVGLHSDGQTMQSQGQLNLDVQRRLDIEDNRQ
Subjt:  KITKRARVKSSEVEVDSRAAALDGCHSCQENMLGSGLSNSNSPFCDGPEGYYSHQAMQSLDQSPSVVAHVGLHSDGQTMQSQGQLNLDVQRRLDIEDNRQ

Query:  DMEQPDDALSQTHINNSSGRTRQP
        DMEQPDDALSQTHINNSSGRTRQP
Subjt:  DMEQPDDALSQTHINNSSGRTRQP

A0A6J1FHF8 Protein FAR1-RELATED SEQUENCE7.3e-2366.04Show/hide
Query:  KITKRARVKSSEVEVDSRAAALDGCHSCQENMLGSGLSNSNSPFCDGPEGYYSHQAMQSLDQSPSVVAHVGLHSDGQTMQSQGQLN---LDVQRRLDIED
        KITK+AR KSSE EVDSRAAALDGC              +NSPFCDGPEGYYS QAMQSLDQSPSVVA VG   D QT+QS GQLN      Q R DIE+
Subjt:  KITKRARVKSSEVEVDSRAAALDGCHSCQENMLGSGLSNSNSPFCDGPEGYYSHQAMQSLDQSPSVVAHVGLHSDGQTMQSQGQLN---LDVQRRLDIED

Query:  NRQDME
        N QDME
Subjt:  NRQDME

A0A6J1FN86 Protein FAR1-RELATED SEQUENCE2.1e-2265.71Show/hide
Query:  KITKRARVKSSEVEVDSRAAALDGCHSCQENMLGSGLSNSNSPFCDGPEGYYSHQAMQSLDQSPSVVAHVGLHSDGQTMQSQGQLN---LDVQRRLDIED
        KITK+AR KSSE EVDSRAAALDGC              +NSPFCDGPEGYYS QAMQSLDQSPSVVA VG   D QT+QS GQLN      Q R DIE+
Subjt:  KITKRARVKSSEVEVDSRAAALDGCHSCQENMLGSGLSNSNSPFCDGPEGYYSHQAMQSLDQSPSVVAHVGLHSDGQTMQSQGQLN---LDVQRRLDIED

Query:  NRQDM
        N QDM
Subjt:  NRQDM

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATCTCCTGTTCTACCTATAAGATAACCAAGCGGGCACGGGTCAAATCATCGGAGGTGGAAGTGGACTCGAGAGCCGCTGCACTTGATGGCTGCCATAGTTGCCAAGA
AAACATGCTAGGATCGGGTCTGTCGAACTCAAATTCTCCTTTCTGTGATGGACCTGAAGGTTATTATAGTCATCAGGCTATGCAGAGTTTGGATCAATCTCCTTCAGTCG
TAGCTCATGTCGGTCTGCATAGCGACGGCCAGACTATGCAGTCCCAGGGACAGCTTAATTTGGATGTGCAACGGCGTCTTGACATTGAAGATAATCGGCAAGATATGGAA
CAGCCTGATGATGCCTTGTCCCAGACTCACATTAACAACTCATCAGGAAGAACAAGACAACCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGATCTCCTGTTCTACCTATAAGATAACCAAGCGGGCACGGGTCAAATCATCGGAGGTGGAAGTGGACTCGAGAGCCGCTGCACTTGATGGCTGCCATAGTTGCCAAGA
AAACATGCTAGGATCGGGTCTGTCGAACTCAAATTCTCCTTTCTGTGATGGACCTGAAGGTTATTATAGTCATCAGGCTATGCAGAGTTTGGATCAATCTCCTTCAGTCG
TAGCTCATGTCGGTCTGCATAGCGACGGCCAGACTATGCAGTCCCAGGGACAGCTTAATTTGGATGTGCAACGGCGTCTTGACATTGAAGATAATCGGCAAGATATGGAA
CAGCCTGATGATGCCTTGTCCCAGACTCACATTAACAACTCATCAGGAAGAACAAGACAACCTTAA
Protein sequenceShow/hide protein sequence
MISCSTYKITKRARVKSSEVEVDSRAAALDGCHSCQENMLGSGLSNSNSPFCDGPEGYYSHQAMQSLDQSPSVVAHVGLHSDGQTMQSQGQLNLDVQRRLDIEDNRQDME
QPDDALSQTHINNSSGRTRQP