; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS024118 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS024118
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionhomeobox-leucine zipper protein HOX3-like
Genome locationscaffold902:240307..240609
RNA-Seq ExpressionMS024118
SyntenyMS024118
Gene Ontology termsGO:0006357 - regulation of transcription by RNA polymerase II (biological process)
GO:0005634 - nucleus (cellular component)
GO:0000981 - DNA-binding transcription factor activity, RNA polymerase II-specific (molecular function)
GO:0043565 - sequence-specific DNA binding (molecular function)
InterPro domainsIPR003106 - Leucine zipper, homeobox-associated


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6579233.1 Homeobox-leucine zipper protein HOX3, partial [Cucurbita argyrosperma subsp. sororia]2.3e-2366Show/hide
Query:  MECEYLKRWFGTLTDQNRRLRLELEELRAIKVAPPALVSPPTRQPTLPASTVTMCPRCERVTAAAIISGKAAAPATAV-TATMPSKALLTAHKLRRPSAA
        MEC+YL+RWFG+LT+QNRRLR ELEELRA KVA PA+VS   RQP LP ST+TMCP+C+RVTAA I S  AAA  TA+ T   PSKA+ +A KL++PS A
Subjt:  MECEYLKRWFGTLTDQNRRLRLELEELRAIKVAPPALVSPPTRQPTLPASTVTMCPRCERVTAAAIISGKAAAPATAV-TATMPSKALLTAHKLRRPSAA

KAG7016747.1 Homeobox-leucine zipper protein ATHB-17, partial [Cucurbita argyrosperma subsp. argyrosperma]2.3e-2366Show/hide
Query:  MECEYLKRWFGTLTDQNRRLRLELEELRAIKVAPPALVSPPTRQPTLPASTVTMCPRCERVTAAAIISGKAAAPATAV-TATMPSKALLTAHKLRRPSAA
        MEC+YL+RWFG+LT+QNRRLR ELEELRA KVA PA+VS   RQP LP ST+TMCP+C+RVTAA I S  AAA  TA+ T   PSKA+ +A KL++PS A
Subjt:  MECEYLKRWFGTLTDQNRRLRLELEELRAIKVAPPALVSPPTRQPTLPASTVTMCPRCERVTAAAIISGKAAAPATAV-TATMPSKALLTAHKLRRPSAA

XP_022152324.1 homeobox-leucine zipper protein HOX3-like [Momordica charantia]4.5e-4396Show/hide
Query:  MECEYLKRWFGTLTDQNRRLRLELEELRAIKVAPPALVSPPTRQPTLPASTVTMCPRCERVTAAAIISGKAAAPATAVTATMPSKALLTAHKLRRPSAAC
        MECEYLKRWFGTLTDQNRRLRLELEELRAIKVAPPAL+S PTRQPTLPASTVTMCP CERVTAA+IISGKAAAPATAVTATMPSKALLTAHKLRRPSAAC
Subjt:  MECEYLKRWFGTLTDQNRRLRLELEELRAIKVAPPALVSPPTRQPTLPASTVTMCPRCERVTAAAIISGKAAAPATAVTATMPSKALLTAHKLRRPSAAC

XP_022939643.1 homeobox-leucine zipper protein HOX3-like [Cucurbita moschata]1.4e-2366Show/hide
Query:  MECEYLKRWFGTLTDQNRRLRLELEELRAIKVAPPALVSPPTRQPTLPASTVTMCPRCERVTAAAIISGKAAAPATAV-TATMPSKALLTAHKLRRPSAA
        MEC+YL+RWFG+LT+QNRRLR ELEELRA KVA PA+VS  +RQP LP ST+TMCP+C+RVTAA I S  AAA  TA+ T   PSKA+ +A KL++PS A
Subjt:  MECEYLKRWFGTLTDQNRRLRLELEELRAIKVAPPALVSPPTRQPTLPASTVTMCPRCERVTAAAIISGKAAAPATAV-TATMPSKALLTAHKLRRPSAA

XP_022989986.1 homeobox-leucine zipper protein HOX3-like isoform X1 [Cucurbita maxima]1.2e-2266.67Show/hide
Query:  ECEYLKRWFGTLTDQNRRLRLELEELRAIKVAPPALVSPPTRQPTLPASTVTMCPRCERVTAAAIISGKAAAPATAVTATMPSKALLTAHKLRRPS
        ECEYLKRWFG+LT+QNRRLR ELEELRA+KVAP A+VS   RQP LP S +TMCPRCERV+A+ I  GK A+ A    +TMP +A L+A KLR+PS
Subjt:  ECEYLKRWFGTLTDQNRRLRLELEELRAIKVAPPALVSPPTRQPTLPASTVTMCPRCERVTAAAIISGKAAAPATAVTATMPSKALLTAHKLRRPS

TrEMBL top hitse value%identityAlignment
A0A6J1DFP4 homeobox-leucine zipper protein HOX3-like2.2e-4396Show/hide
Query:  MECEYLKRWFGTLTDQNRRLRLELEELRAIKVAPPALVSPPTRQPTLPASTVTMCPRCERVTAAAIISGKAAAPATAVTATMPSKALLTAHKLRRPSAAC
        MECEYLKRWFGTLTDQNRRLRLELEELRAIKVAPPAL+S PTRQPTLPASTVTMCP CERVTAA+IISGKAAAPATAVTATMPSKALLTAHKLRRPSAAC
Subjt:  MECEYLKRWFGTLTDQNRRLRLELEELRAIKVAPPALVSPPTRQPTLPASTVTMCPRCERVTAAAIISGKAAAPATAVTATMPSKALLTAHKLRRPSAAC

A0A6J1FM68 homeobox-leucine zipper protein HOX3-like6.6e-2466Show/hide
Query:  MECEYLKRWFGTLTDQNRRLRLELEELRAIKVAPPALVSPPTRQPTLPASTVTMCPRCERVTAAAIISGKAAAPATAV-TATMPSKALLTAHKLRRPSAA
        MEC+YL+RWFG+LT+QNRRLR ELEELRA KVA PA+VS  +RQP LP ST+TMCP+C+RVTAA I S  AAA  TA+ T   PSKA+ +A KL++PS A
Subjt:  MECEYLKRWFGTLTDQNRRLRLELEELRAIKVAPPALVSPPTRQPTLPASTVTMCPRCERVTAAAIISGKAAAPATAV-TATMPSKALLTAHKLRRPSAA

A0A6J1HI55 homeobox-leucine zipper protein HOX3-like isoform X12.1e-2264.58Show/hide
Query:  ECEYLKRWFGTLTDQNRRLRLELEELRAIKVAPPALVSPPTRQPTLPASTVTMCPRCERVTAAAIISGKAAAPATAVTATMPSKALLTAHKLRRPS
        ECEYLKRWFG+LT+QNRRLR ELEELRA+KVAP A+VS   RQP LP S +TMCPRCER++A+ I  GK A+ A    +T+P +A L+A KLR+PS
Subjt:  ECEYLKRWFGTLTDQNRRLRLELEELRAIKVAPPALVSPPTRQPTLPASTVTMCPRCERVTAAAIISGKAAAPATAVTATMPSKALLTAHKLRRPS

A0A6J1JHC4 homeobox-leucine zipper protein ATHB-17-like isoform X25.6e-2366.67Show/hide
Query:  ECEYLKRWFGTLTDQNRRLRLELEELRAIKVAPPALVSPPTRQPTLPASTVTMCPRCERVTAAAIISGKAAAPATAVTATMPSKALLTAHKLRRPS
        ECEYLKRWFG+LT+QNRRLR ELEELRA+KVAP A+VS   RQP LP S +TMCPRCERV+A+ I  GK A+ A    +TMP +A L+A KLR+PS
Subjt:  ECEYLKRWFGTLTDQNRRLRLELEELRAIKVAPPALVSPPTRQPTLPASTVTMCPRCERVTAAAIISGKAAAPATAVTATMPSKALLTAHKLRRPS

A0A6J1JLP7 homeobox-leucine zipper protein HOX3-like isoform X15.6e-2366.67Show/hide
Query:  ECEYLKRWFGTLTDQNRRLRLELEELRAIKVAPPALVSPPTRQPTLPASTVTMCPRCERVTAAAIISGKAAAPATAVTATMPSKALLTAHKLRRPS
        ECEYLKRWFG+LT+QNRRLR ELEELRA+KVAP A+VS   RQP LP S +TMCPRCERV+A+ I  GK A+ A    +TMP +A L+A KLR+PS
Subjt:  ECEYLKRWFGTLTDQNRRLRLELEELRAIKVAPPALVSPPTRQPTLPASTVTMCPRCERVTAAAIISGKAAAPATAVTATMPSKALLTAHKLRRPS

SwissProt top hitse value%identityAlignment
A2YW03 Homeobox-leucine zipper protein HOX271.8e-1043.56Show/hide
Query:  MECEYLKRWFGTLTDQNRRLRLELEELRAIKVAPPALVSPPTRQPTLPASTVTMCPRCERVT---AAAIISGKAAAPATAVTATMPSKALLTAHKLRRPS
        ++CEYLKR   TLT++NRRL  EL ELRA+K A P  +        LPA+T++MCP CERV    A A  S  AAA + A   T  ++  + + +  RPS
Subjt:  MECEYLKRWFGTLTDQNRRLRLELEELRAIKVAPPALVSPPTRQPTLPASTVTMCPRCERVT---AAAIISGKAAAPATAVTATMPSKALLTAHKLRRPS

Query:  A
        +
Subjt:  A

Q0JKX1 Homeobox-leucine zipper protein HOX34.7e-1956.57Show/hide
Query:  MECEYLKRWFGTLTDQNRRLRLELEELRAIKVAPPALVSPPTRQPTLPASTVTMCPRCERVTAAAIISGKAAAPATAVTATMPSKALLTAHKLRRPSAA
        MECEYLKR FG+LT++NRRL+ E+EELRA++VAPP ++SP TRQP LPAS +TMCPRCER+TAA         PA     +  + A  +    RRPSAA
Subjt:  MECEYLKRWFGTLTDQNRRLRLELEELRAIKVAPPALVSPPTRQPTLPASTVTMCPRCERVTAAAIISGKAAAPATAVTATMPSKALLTAHKLRRPSAA

Q8GXM7 Homeobox-leucine zipper protein ATHB-X1.2e-1156.25Show/hide
Query:  MECEYLKRWFGTLTDQNRRLRLELEELRAIKVAPPALVSPPTRQPTLPASTVTMCPRCERVTAA
        MECEYLKRWFG+L +QNRRL++E+EELRA+K +                S +TMCPRCERVT A
Subjt:  MECEYLKRWFGTLTDQNRRLRLELEELRAIKVAPPALVSPPTRQPTLPASTVTMCPRCERVTAA

Q8S9N6 Homeobox-leucine zipper protein ATHB-173.0e-1352.94Show/hide
Query:  MECEYLKRWFGTLTDQNRRLRLELEELRAIKVAPPALVSPPTRQPTLPASTVTMCPRCERVTAAAIISGKAAAPATAVTATMPSK
        MECEYLKRWFG+LT++N RL  E+EELRA+KV P  + S         AS++TMCPRCERVT AA  S +A  P  A     P +
Subjt:  MECEYLKRWFGTLTDQNRRLRLELEELRAIKVAPPALVSPPTRQPTLPASTVTMCPRCERVTAAAIISGKAAAPATAVTATMPSK

Q9XH38 Homeobox-leucine zipper protein HOX34.7e-1956.57Show/hide
Query:  MECEYLKRWFGTLTDQNRRLRLELEELRAIKVAPPALVSPPTRQPTLPASTVTMCPRCERVTAAAIISGKAAAPATAVTATMPSKALLTAHKLRRPSAA
        MECEYLKR FG+LT++NRRL+ E+EELRA++VAPP ++SP TRQP LPAS +TMCPRCER+TAA         PA     +  + A  +    RRPSAA
Subjt:  MECEYLKRWFGTLTDQNRRLRLELEELRAIKVAPPALVSPPTRQPTLPASTVTMCPRCERVTAAAIISGKAAAPATAVTATMPSKALLTAHKLRRPSAA

Arabidopsis top hitse value%identityAlignment
AT1G70920.1 homeobox-leucine zipper protein 188.8e-1356.25Show/hide
Query:  MECEYLKRWFGTLTDQNRRLRLELEELRAIKVAPPALVSPPTRQPTLPASTVTMCPRCERVTAA
        MECEYLKRWFG+L +QNRRL++E+EELRA+K +                S +TMCPRCERVT A
Subjt:  MECEYLKRWFGTLTDQNRRLRLELEELRAIKVAPPALVSPPTRQPTLPASTVTMCPRCERVTAA

AT2G01430.1 homeobox-leucine zipper protein 172.1e-1452.94Show/hide
Query:  MECEYLKRWFGTLTDQNRRLRLELEELRAIKVAPPALVSPPTRQPTLPASTVTMCPRCERVTAAAIISGKAAAPATAVTATMPSK
        MECEYLKRWFG+LT++N RL  E+EELRA+KV P  + S         AS++TMCPRCERVT AA  S +A  P  A     P +
Subjt:  MECEYLKRWFGTLTDQNRRLRLELEELRAIKVAPPALVSPPTRQPTLPASTVTMCPRCERVTAAAIISGKAAAPATAVTATMPSK

AT2G44910.1 homeobox-leucine zipper protein 44.1e-1044.68Show/hide
Query:  MECEYLKRWFGTLTDQNRRLRLELEELRAIKVAPPAL--VSPPTRQPTLPASTVTMCPRCERVTAAAIISGKAAAPATAVTATM---PSKALLT
        ++CEYLKR    LT++NRRL+ E+ ELRA+K++P     ++PPT        T+TMCP CERV+++A  +   AAP+T  T T+   PS   LT
Subjt:  MECEYLKRWFGTLTDQNRRLRLELEELRAIKVAPPAL--VSPPTRQPTLPASTVTMCPRCERVTAAAIISGKAAAPATAVTATM---PSKALLT

AT4G37790.1 Homeobox-leucine zipper protein family1.0e-0837.74Show/hide
Query:  MECEYLKRWFGTLTDQNRRLRLELEELRAIKVAPPALVSPPTRQPTLPASTVTMCPRCERVTAAAIISGKAAAPATAVTATMPSKALLTAHKLR------
        ++CE+LK+   TLTD+NRRL+ EL++L+A+K++ P  +        +PA+T+TMCP CER+       G      TAV       A     K R      
Subjt:  MECEYLKRWFGTLTDQNRRLRLELEELRAIKVAPPALVSPPTRQPTLPASTVTMCPRCERVTAAAIISGKAAAPATAVTATMPSKALLTAHKLR------

Query:  RPSAAC
         PSAAC
Subjt:  RPSAAC

AT5G06710.1 homeobox from Arabidopsis thaliana7.0e-1045.21Show/hide
Query:  MECEYLKRWFGTLTDQNRRLRLELEELRAIKVAPPALVSPPTRQPTLPASTVTMCPRCERVTAAAIISGKAAA
        ++CEYLKR   +LT++NRRL+ E++ELR +K + P  +        LPA+T+TMCP CERV  +A     +AA
Subjt:  MECEYLKRWFGTLTDQNRRLRLELEELRAIKVAPPALVSPPTRQPTLPASTVTMCPRCERVTAAAIISGKAAA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAATGTGAGTATTTGAAGAGATGGTTTGGAACATTGACAGACCAGAACCGTCGGCTACGCCTTGAACTGGAGGAGCTGAGGGCCATCAAGGTTGCTCCGCCCGCCCT
CGTCTCACCCCCCACCCGTCAACCGACCCTCCCGGCGTCCACCGTAACCATGTGTCCGCGTTGTGAGCGCGTAACCGCTGCCGCTATAATATCCGGTAAGGCTGCAGCCC
CCGCCACCGCAGTCACCGCCACAATGCCATCGAAGGCACTTCTAACCGCCCACAAACTGCGGCGACCATCGGCCGCTTGCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAATGTGAGTATTTGAAGAGATGGTTTGGAACATTGACAGACCAGAACCGTCGGCTACGCCTTGAACTGGAGGAGCTGAGGGCCATCAAGGTTGCTCCGCCCGCCCT
CGTCTCACCCCCCACCCGTCAACCGACCCTCCCGGCGTCCACCGTAACCATGTGTCCGCGTTGTGAGCGCGTAACCGCTGCCGCTATAATATCCGGTAAGGCTGCAGCCC
CCGCCACCGCAGTCACCGCCACAATGCCATCGAAGGCACTTCTAACCGCCCACAAACTGCGGCGACCATCGGCCGCTTGCTGA
Protein sequenceShow/hide protein sequence
MECEYLKRWFGTLTDQNRRLRLELEELRAIKVAPPALVSPPTRQPTLPASTVTMCPRCERVTAAAIISGKAAAPATAVTATMPSKALLTAHKLRRPSAAC