; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS024144 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS024144
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionUbiquitin
Genome locationscaffold36:168455..171835
RNA-Seq ExpressionMS024144
SyntenyMS024144
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0009944 - polarity specification of adaxial/abaxial axis (biological process)
GO:0016567 - protein ubiquitination (biological process)
GO:0019941 - modification-dependent protein catabolic process (biological process)
GO:0045165 - cell fate commitment (biological process)
GO:0048481 - plant ovule development (biological process)
GO:0005634 - nucleus (cellular component)
GO:0005737 - cytoplasm (cellular component)
GO:0005840 - ribosome (cellular component)
GO:0031386 - protein tag (molecular function)
GO:0046872 - metal ion binding (molecular function)
GO:0031625 - ubiquitin protein ligase binding (molecular function)
GO:0003729 - mRNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR038582 - S27a-like superfamily
IPR011332 - Zinc-binding ribosomal protein
IPR006780 - YABBY protein
IPR002906 - Ribosomal protein S27a


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0061079.1 axial regulator YABBY 4 isoform X2 [Cucumis melo var. makuwa]2.9e-5077.85Show/hide
Query:  MSTVEDLL-DSSEEIRYVQCGLCSTILLVNVPYSNLSMVVSVRCGNCTGLLSVNMAMPSFIPFDLLTSLSHNLPKQLAFGQDFDL-----------NNVT
        MSTVE LL DSSE+IRYVQCGLCSTILLVNVPYSNLSMVVSVRCGNC GLLSVNMA PSFIPFDLLTSLSHNLPK+  FGQ+F++            + +
Subjt:  MSTVEDLL-DSSEEIRYVQCGLCSTILLVNVPYSNLSMVVSVRCGNCTGLLSVNMAMPSFIPFDLLTSLSHNLPKQLAFGQDFDL-----------NNVT

Query:  SDLIASNHNIIQDHEDDPDLIINIPPTPVVNKPPEKKQRAPSAYNQFIK
        SDL+ S HNIIQ+HEDD D+II IPPTPVVNKPPEKKQRAPSAYNQFIK
Subjt:  SDLIASNHNIIQDHEDDPDLIINIPPTPVVNKPPEKKQRAPSAYNQFIK

KAE8652041.1 hypothetical protein Csa_018647 [Cucumis sativus]2.2e-5077.85Show/hide
Query:  MSTVEDLL-DSSEEIRYVQCGLCSTILLVNVPYSNLSMVVSVRCGNCTGLLSVNMAMPSFIPFDLLTSLSHNLPKQLAFGQDFDL-----------NNVT
        MSTVE LL DSSE+IRYVQCGLCSTILLVNVPYSNLSMVVSVRCGNC GLLSVNMA PSFIPFDLLTSLSHNLPK+  FGQ+F++           ++ +
Subjt:  MSTVEDLL-DSSEEIRYVQCGLCSTILLVNVPYSNLSMVVSVRCGNCTGLLSVNMAMPSFIPFDLLTSLSHNLPKQLAFGQDFDL-----------NNVT

Query:  SDLIASNHNIIQDHEDDPDLIINIPPTPVVNKPPEKKQRAPSAYNQFIK
        SDL+ S HNIIQ+HEDD D+II IPPTPVVNKPPEKKQRAPSAYNQFIK
Subjt:  SDLIASNHNIIQDHEDDPDLIINIPPTPVVNKPPEKKQRAPSAYNQFIK

XP_004143066.2 axial regulator YABBY 4 [Cucumis sativus]2.2e-5077.85Show/hide
Query:  MSTVEDLL-DSSEEIRYVQCGLCSTILLVNVPYSNLSMVVSVRCGNCTGLLSVNMAMPSFIPFDLLTSLSHNLPKQLAFGQDFDL-----------NNVT
        MSTVE LL DSSE+IRYVQCGLCSTILLVNVPYSNLSMVVSVRCGNC GLLSVNMA PSFIPFDLLTSLSHNLPK+  FGQ+F++           ++ +
Subjt:  MSTVEDLL-DSSEEIRYVQCGLCSTILLVNVPYSNLSMVVSVRCGNCTGLLSVNMAMPSFIPFDLLTSLSHNLPKQLAFGQDFDL-----------NNVT

Query:  SDLIASNHNIIQDHEDDPDLIINIPPTPVVNKPPEKKQRAPSAYNQFIK
        SDL+ S HNIIQ+HEDD D+II IPPTPVVNKPPEKKQRAPSAYNQFIK
Subjt:  SDLIASNHNIIQDHEDDPDLIINIPPTPVVNKPPEKKQRAPSAYNQFIK

XP_022132347.1 axial regulator YABBY 4-like [Momordica charantia]9.5e-70100Show/hide
Query:  MSTVEDLLDSSEEIRYVQCGLCSTILLVNVPYSNLSMVVSVRCGNCTGLLSVNMAMPSFIPFDLLTSLSHNLPKQLAFGQDFDLNNVTSDLIASNHNIIQ
        MSTVEDLLDSSEEIRYVQCGLCSTILLVNVPYSNLSMVVSVRCGNCTGLLSVNMAMPSFIPFDLLTSLSHNLPKQLAFGQDFDLNNVTSDLIASNHNIIQ
Subjt:  MSTVEDLLDSSEEIRYVQCGLCSTILLVNVPYSNLSMVVSVRCGNCTGLLSVNMAMPSFIPFDLLTSLSHNLPKQLAFGQDFDLNNVTSDLIASNHNIIQ

Query:  DHEDDPDLIINIPPTPVVNKPPEKKQRAPSAYNQFIK
        DHEDDPDLIINIPPTPVVNKPPEKKQRAPSAYNQFIK
Subjt:  DHEDDPDLIINIPPTPVVNKPPEKKQRAPSAYNQFIK

XP_022997624.1 axial regulator YABBY 4-like [Cucurbita maxima]1.9e-4979.02Show/hide
Query:  STVEDLL-DSSEEIRYVQCGLCSTILLVNVPYSNLSMVVSVRCGNCTGLLSVNMAMPSFIPFDLLTSLSHNLPKQ----LAFGQDFDLNNV--TSDLIAS
        ST+E LL D SE+IRYVQCGLCSTILLVNVPYSNLSMVVSVRCGNCTGLLSVNMA PSFIPFDLLTSLSHNLPK+    L   +   L+N+  TSDL+ S
Subjt:  STVEDLL-DSSEEIRYVQCGLCSTILLVNVPYSNLSMVVSVRCGNCTGLLSVNMAMPSFIPFDLLTSLSHNLPKQ----LAFGQDFDLNNV--TSDLIAS

Query:  NHNIIQDHEDDPDLIINIPPTPVVNKPPEKKQRAPSAYNQFIK
         HNIIQ+HEDD D  I IPPTPVVNKPPEKKQRAPSAYNQFIK
Subjt:  NHNIIQDHEDDPDLIINIPPTPVVNKPPEKKQRAPSAYNQFIK

TrEMBL top hitse value%identityAlignment
A0A0A0LK60 Uncharacterized protein1.1e-5077.85Show/hide
Query:  MSTVEDLL-DSSEEIRYVQCGLCSTILLVNVPYSNLSMVVSVRCGNCTGLLSVNMAMPSFIPFDLLTSLSHNLPKQLAFGQDFDL-----------NNVT
        MSTVE LL DSSE+IRYVQCGLCSTILLVNVPYSNLSMVVSVRCGNC GLLSVNMA PSFIPFDLLTSLSHNLPK+  FGQ+F++           ++ +
Subjt:  MSTVEDLL-DSSEEIRYVQCGLCSTILLVNVPYSNLSMVVSVRCGNCTGLLSVNMAMPSFIPFDLLTSLSHNLPKQLAFGQDFDL-----------NNVT

Query:  SDLIASNHNIIQDHEDDPDLIINIPPTPVVNKPPEKKQRAPSAYNQFIK
        SDL+ S HNIIQ+HEDD D+II IPPTPVVNKPPEKKQRAPSAYNQFIK
Subjt:  SDLIASNHNIIQDHEDDPDLIINIPPTPVVNKPPEKKQRAPSAYNQFIK

A0A5A7V5T8 Axial regulator YABBY 4 isoform X21.4e-5077.85Show/hide
Query:  MSTVEDLL-DSSEEIRYVQCGLCSTILLVNVPYSNLSMVVSVRCGNCTGLLSVNMAMPSFIPFDLLTSLSHNLPKQLAFGQDFDL-----------NNVT
        MSTVE LL DSSE+IRYVQCGLCSTILLVNVPYSNLSMVVSVRCGNC GLLSVNMA PSFIPFDLLTSLSHNLPK+  FGQ+F++            + +
Subjt:  MSTVEDLL-DSSEEIRYVQCGLCSTILLVNVPYSNLSMVVSVRCGNCTGLLSVNMAMPSFIPFDLLTSLSHNLPKQLAFGQDFDL-----------NNVT

Query:  SDLIASNHNIIQDHEDDPDLIINIPPTPVVNKPPEKKQRAPSAYNQFIK
        SDL+ S HNIIQ+HEDD D+II IPPTPVVNKPPEKKQRAPSAYNQFIK
Subjt:  SDLIASNHNIIQDHEDDPDLIINIPPTPVVNKPPEKKQRAPSAYNQFIK

A0A6J1BTL6 axial regulator YABBY 4-like4.6e-70100Show/hide
Query:  MSTVEDLLDSSEEIRYVQCGLCSTILLVNVPYSNLSMVVSVRCGNCTGLLSVNMAMPSFIPFDLLTSLSHNLPKQLAFGQDFDLNNVTSDLIASNHNIIQ
        MSTVEDLLDSSEEIRYVQCGLCSTILLVNVPYSNLSMVVSVRCGNCTGLLSVNMAMPSFIPFDLLTSLSHNLPKQLAFGQDFDLNNVTSDLIASNHNIIQ
Subjt:  MSTVEDLLDSSEEIRYVQCGLCSTILLVNVPYSNLSMVVSVRCGNCTGLLSVNMAMPSFIPFDLLTSLSHNLPKQLAFGQDFDLNNVTSDLIASNHNIIQ

Query:  DHEDDPDLIINIPPTPVVNKPPEKKQRAPSAYNQFIK
        DHEDDPDLIINIPPTPVVNKPPEKKQRAPSAYNQFIK
Subjt:  DHEDDPDLIINIPPTPVVNKPPEKKQRAPSAYNQFIK

A0A6J1HCV6 axial regulator YABBY 4-like1.1e-4777.4Show/hide
Query:  STVEDLL-DSSEEIRYVQCGLCSTILLVNVPYSNLSMVVSVRCGNCTGLLSVNMAMPSFIPFDLLTSLSHNLPKQLAFGQD--------FDLNNVTSDLI
        ST+E LL D SE+IRYVQCGLCSTILLVNVPYSNLSMVVSVRCGNCTGLLSVNMA PSFIPFDLLTSLSHNLPK+    QD         D  N  SDL+
Subjt:  STVEDLL-DSSEEIRYVQCGLCSTILLVNVPYSNLSMVVSVRCGNCTGLLSVNMAMPSFIPFDLLTSLSHNLPKQLAFGQD--------FDLNNVTSDLI

Query:  ASNHNIIQDHE-DDPDLIINIPPTPVVNKPPEKKQRAPSAYNQFIK
         S HNIIQ+HE DD D  I IPPTPVVNKPPEKKQRAPSAYNQFIK
Subjt:  ASNHNIIQDHE-DDPDLIINIPPTPVVNKPPEKKQRAPSAYNQFIK

A0A6J1KC10 axial regulator YABBY 4-like9.0e-5079.02Show/hide
Query:  STVEDLL-DSSEEIRYVQCGLCSTILLVNVPYSNLSMVVSVRCGNCTGLLSVNMAMPSFIPFDLLTSLSHNLPKQ----LAFGQDFDLNNV--TSDLIAS
        ST+E LL D SE+IRYVQCGLCSTILLVNVPYSNLSMVVSVRCGNCTGLLSVNMA PSFIPFDLLTSLSHNLPK+    L   +   L+N+  TSDL+ S
Subjt:  STVEDLL-DSSEEIRYVQCGLCSTILLVNVPYSNLSMVVSVRCGNCTGLLSVNMAMPSFIPFDLLTSLSHNLPKQ----LAFGQDFDLNNV--TSDLIAS

Query:  NHNIIQDHEDDPDLIINIPPTPVVNKPPEKKQRAPSAYNQFIK
         HNIIQ+HEDD D  I IPPTPVVNKPPEKKQRAPSAYNQFIK
Subjt:  NHNIIQDHEDDPDLIINIPPTPVVNKPPEKKQRAPSAYNQFIK

SwissProt top hitse value%identityAlignment
P47905 Ubiquitin-40S ribosomal protein S27a3.4e-3887.5Show/hide
Query:  SAYNQFIKLRGGAKKRKKKTYTKPKKIKHKKKKVKLSVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQK
        S  +  ++LRGGAKKRKKKTYTKPKKIKHK KKVKL+VLQFYKVDDSGKVQRLRKECPN ECGAGTFMANHFDRHYCGKCG TYVYQK
Subjt:  SAYNQFIKLRGGAKKRKKKTYTKPKKIKHKKKKVKLSVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQK

P59232 Ubiquitin-40S ribosomal protein S27a-27.7e-3885.56Show/hide
Query:  SAYNQFIKLRGGAKKRKKKTYTKPKKIKHKKKKVKLSVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQKPG
        S  +  ++LRGGAKKRKKKTYTKPKKIKHK KKVKL+VLQFYKVD SGKVQRLRKECPNA CGAGTFMA+HFDRHYCGKCGLTYVYQK G
Subjt:  SAYNQFIKLRGGAKKRKKKTYTKPKKIKHKKKKVKLSVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQKPG

P59233 Ubiquitin-40S ribosomal protein S27a-31.0e-3784.44Show/hide
Query:  SAYNQFIKLRGGAKKRKKKTYTKPKKIKHKKKKVKLSVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQKPG
        S  +  ++LRGGAKKRKKKTYTKPKKIKHK KKVKL+VLQFYK+D SGKVQRLRKECPNA CGAGTFMA+HFDRHYCGKCGLTYVYQK G
Subjt:  SAYNQFIKLRGGAKKRKKKTYTKPKKIKHKKKKVKLSVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQKPG

P62980 Ubiquitin-40S ribosomal protein S27a4.3e-4188.04Show/hide
Query:  SAYNQFIKLRGGAKKRKKKTYTKPKKIKHKKKKVKLSVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQKPGGD
        S  +  ++LRGGAKKRKKKTYTKPKKIKHKKKKVKL+VLQFYKVDD+GKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVY K GGD
Subjt:  SAYNQFIKLRGGAKKRKKKTYTKPKKIKHKKKKVKLSVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQKPGGD

P62981 Ubiquitin-40S ribosomal protein S27a4.3e-4188.04Show/hide
Query:  SAYNQFIKLRGGAKKRKKKTYTKPKKIKHKKKKVKLSVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQKPGGD
        S  +  ++LRGGAKKRKKKTYTKPKKIKHKKKKVKL+VLQFYKVDD+GKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVY K GGD
Subjt:  SAYNQFIKLRGGAKKRKKKTYTKPKKIKHKKKKVKLSVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQKPGGD

Arabidopsis top hitse value%identityAlignment
AT1G23410.1 Ribosomal protein S27a / Ubiquitin family protein2.4e-3477.27Show/hide
Query:  SAYNQFIKLRGGAKKRKKKTYTKPKKIKHKKKKVKLSVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQK
        S  +  ++LRGGAKKRKKKTYTKPKKIKH  KKVKL+VLQFYKVD SGKVQRL+KECP+  CG GTFMA+HFDRHYCGKCG TYV++K
Subjt:  SAYNQFIKLRGGAKKRKKKTYTKPKKIKHKKKKVKLSVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQK

AT1G23420.1 Plant-specific transcription factor YABBY family protein1.3e-2445.27Show/hide
Query:  STVEDLLDSSEEIRYVQCGLCSTILLVNVPYSNLSMVVSVRCGNCTGLLSVNMAMPSFIPFDLLTSLSH------------NLPKQLAFGQDFDLNNVTS
        +T+  L D   +I +VQCG C+TILLV+VP+++LSMVV+VRCG+CT LLSVN+   SFIP  LL SLSH            +  ++ A+  + +  N  +
Subjt:  STVEDLLDSSEEIRYVQCGLCSTILLVNVPYSNLSMVVSVRCGNCTGLLSVNMAMPSFIPFDLLTSLSH------------NLPKQLAFGQDFDLNNVTS

Query:  DLIASNHNIIQDHEDDPDLIINIPPTPVVNKPPEKKQRAPSAYNQFIK
         L++S+ N     ++D   +       VVNKPPEK+QRAPSAYN FIK
Subjt:  DLIASNHNIIQDHEDDPDLIINIPPTPVVNKPPEKKQRAPSAYNQFIK

AT2G47110.1 ubiquitin 65.4e-3985.56Show/hide
Query:  SAYNQFIKLRGGAKKRKKKTYTKPKKIKHKKKKVKLSVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQKPG
        S  +  ++LRGGAKKRKKKTYTKPKKIKHK KKVKL+VLQFYKVD SGKVQRLRKECPNA CGAGTFMA+HFDRHYCGKCGLTYVYQK G
Subjt:  SAYNQFIKLRGGAKKRKKKTYTKPKKIKHKKKKVKLSVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQKPG

AT2G47110.2 ubiquitin 65.4e-3985.56Show/hide
Query:  SAYNQFIKLRGGAKKRKKKTYTKPKKIKHKKKKVKLSVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQKPG
        S  +  ++LRGGAKKRKKKTYTKPKKIKHK KKVKL+VLQFYKVD SGKVQRLRKECPNA CGAGTFMA+HFDRHYCGKCGLTYVYQK G
Subjt:  SAYNQFIKLRGGAKKRKKKTYTKPKKIKHKKKKVKLSVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQKPG

AT3G62250.1 ubiquitin 57.1e-3984.44Show/hide
Query:  SAYNQFIKLRGGAKKRKKKTYTKPKKIKHKKKKVKLSVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQKPG
        S  +  ++LRGGAKKRKKKTYTKPKKIKHK KKVKL+VLQFYK+D SGKVQRLRKECPNA CGAGTFMA+HFDRHYCGKCGLTYVYQK G
Subjt:  SAYNQFIKLRGGAKKRKKKTYTKPKKIKHKKKKVKLSVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQKPG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGACAGTGGAGGACCTGCTGGATTCGTCTGAAGAGATTCGCTATGTCCAATGTGGCCTTTGTAGCACCATATTGTTGGTAAACGTTCCATACAGCAACCTGTCGAT
GGTGGTGAGCGTTAGATGCGGCAACTGCACTGGCCTCCTCTCTGTCAACATGGCGATGCCCTCTTTCATCCCTTTTGATCTTCTCACTTCCCTCTCTCATAACTTGCCAA
AACAGTTGGCTTTCGGCCAAGACTTTGACCTCAACAACGTCACATCCGACCTCATAGCCTCCAACCATAACATAATTCAAGATCATGAAGATGATCCCGACCTCATCATC
AATATTCCCCCCACTCCAGTTGTTAACAAGCCCCCGGAGAAGAAACAGCGAGCCCCGTCAGCTTATAACCAATTCATCAAGCTCCGTGGTGGTGCCAAGAAGCGCAAGAA
GAAGACCTACACCAAGCCCAAAAAAATCAAGCACAAGAAGAAGAAGGTCAAGCTCTCTGTTCTTCAGTTTTACAAGGTCGACGACTCAGGAAAAGTTCAGAGGCTTAGGA
AAGAGTGTCCTAACGCCGAGTGCGGAGCTGGTACTTTCATGGCCAATCACTTCGATCGTCATTATTGTGGCAAGTGTGGTTTGACTTACGTGTACCAGAAGCCCGGCGGT
GACTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCGACAGTGGAGGACCTGCTGGATTCGTCTGAAGAGATTCGCTATGTCCAATGTGGCCTTTGTAGCACCATATTGTTGGTAAACGTTCCATACAGCAACCTGTCGAT
GGTGGTGAGCGTTAGATGCGGCAACTGCACTGGCCTCCTCTCTGTCAACATGGCGATGCCCTCTTTCATCCCTTTTGATCTTCTCACTTCCCTCTCTCATAACTTGCCAA
AACAGTTGGCTTTCGGCCAAGACTTTGACCTCAACAACGTCACATCCGACCTCATAGCCTCCAACCATAACATAATTCAAGATCATGAAGATGATCCCGACCTCATCATC
AATATTCCCCCCACTCCAGTTGTTAACAAGCCCCCGGAGAAGAAACAGCGAGCCCCGTCAGCTTATAACCAATTCATCAAGCTCCGTGGTGGTGCCAAGAAGCGCAAGAA
GAAGACCTACACCAAGCCCAAAAAAATCAAGCACAAGAAGAAGAAGGTCAAGCTCTCTGTTCTTCAGTTTTACAAGGTCGACGACTCAGGAAAAGTTCAGAGGCTTAGGA
AAGAGTGTCCTAACGCCGAGTGCGGAGCTGGTACTTTCATGGCCAATCACTTCGATCGTCATTATTGTGGCAAGTGTGGTTTGACTTACGTGTACCAGAAGCCCGGCGGT
GACTAG
Protein sequenceShow/hide protein sequence
MSTVEDLLDSSEEIRYVQCGLCSTILLVNVPYSNLSMVVSVRCGNCTGLLSVNMAMPSFIPFDLLTSLSHNLPKQLAFGQDFDLNNVTSDLIASNHNIIQDHEDDPDLII
NIPPTPVVNKPPEKKQRAPSAYNQFIKLRGGAKKRKKKTYTKPKKIKHKKKKVKLSVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQKPGG
D