; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS024172 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS024172
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionAutophagy-related 18
Genome locationscaffold36:3542772..3543450
RNA-Seq ExpressionMS024172
SyntenyMS024172
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0005634 - nucleus (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6772902.1 hypothetical protein POTOM_024331 [Populus tomentosa]8.0e-1156.41Show/hide
Query:  MSKSKMKRASIGSRKSAIVHEESEARRKYQILLQDFLEVQKDFVSKKRKLQVLRQRKETHGAEVRFLRQRLEYLQKLQ
        MSK+  KR ++ S +S  V+E +  R KYQ LL+DFLE+QKDFVSKKRKL+ + Q++E   AEVRFLRQR E+  K+Q
Subjt:  MSKSKMKRASIGSRKSAIVHEESEARRKYQILLQDFLEVQKDFVSKKRKLQVLRQRKETHGAEVRFLRQRLEYLQKLQ

XP_002308710.2 uncharacterized protein LOC7489157 [Populus trichocarpa]1.0e-1055.7Show/hide
Query:  MSKSKMKRASIGSRKSAIVHEESEARRKYQILLQDFLEVQKDFVSKKRKLQVLRQRKETHGAEVRFLRQRLEYLQKLQN
        MSK+  KR ++ S +S  V E +  R KYQ LL+DFLE+QKDFVSKKRKL+ + Q++E   AEVRFLRQR E+  K+Q+
Subjt:  MSKSKMKRASIGSRKSAIVHEESEARRKYQILLQDFLEVQKDFVSKKRKLQVLRQRKETHGAEVRFLRQRLEYLQKLQN

XP_022132126.1 uncharacterized protein LOC111005070 [Momordica charantia]2.9e-6198.52Show/hide
Query:  MSKSKMKRASIGSRKSAIVHEESEARRKYQILLQDFLEVQKDFVSKKRKLQVLRQRKETHGAEVRFLRQRLEYLQKLQNRKHDSISEDLPMVLETKQNLD
        MS+SKMKRASIGSRKSAIVHEESEARRKYQILLQDFLEVQKDFVSKKRKLQVLRQRKET GAEVRFLRQRLEYLQKLQNRKHDSISEDLPMVLETKQNLD
Subjt:  MSKSKMKRASIGSRKSAIVHEESEARRKYQILLQDFLEVQKDFVSKKRKLQVLRQRKETHGAEVRFLRQRLEYLQKLQNRKHDSISEDLPMVLETKQNLD

Query:  GVEEEKFQNKALGINKMVGKIKTLGQARDINSVPS
        GVEEEKFQNKALGINKMVGKIKTLGQARDINSVPS
Subjt:  GVEEEKFQNKALGINKMVGKIKTLGQARDINSVPS

XP_038884216.1 uncharacterized protein LOC120075114 isoform X1 [Benincasa hispida]2.0e-1472.86Show/hide
Query:  LEVQKDFVSKKRKLQVLRQRKETHGAEVRFLRQRLEYLQKLQNRKHDSISEDLPMVLETKQNLDGVEEEK
        LE+QK+ VSK RKL+VL+QRKET   EV FLR+RL YLQKLQNR HD   E+LPMVLE+KQNLDGVEE+K
Subjt:  LEVQKDFVSKKRKLQVLRQRKETHGAEVRFLRQRLEYLQKLQNRKHDSISEDLPMVLETKQNLDGVEEEK

XP_038884217.1 uncharacterized protein LOC120075114 isoform X2 [Benincasa hispida]8.0e-1171.43Show/hide
Query:  LEVQKDFVSKKRKLQVLRQRKETHGAEVRFLRQRLEYLQKLQNRKHDSISEDLPMVLETKQNL
        LE+QK+ VSK RKL+VL+QRKET   EV FLR+RL YLQKLQNR HD   E+LPMVLE+KQNL
Subjt:  LEVQKDFVSKKRKLQVLRQRKETHGAEVRFLRQRLEYLQKLQNRKHDSISEDLPMVLETKQNL

TrEMBL top hitse value%identityAlignment
A0A1R3J7E0 Ubiquitin6.6e-1154.12Show/hide
Query:  MKRASIGSRKS-AIVHEESEARRKYQILLQDFLEVQKDFVSKKRKLQVLRQRKETHGAEVRFLRQRLEYLQKLQNRKHDSISEDL
        MKRASI SR+    V EE++AR K+Q LLQ+FLE+QK+FV KKRKLQ ++Q++ET  AEV+FLRQR  YL  +++++++ + +DL
Subjt:  MKRASIGSRKS-AIVHEESEARRKYQILLQDFLEVQKDFVSKKRKLQVLRQRKETHGAEVRFLRQRLEYLQKLQNRKHDSISEDL

A0A2K2A8R5 Uncharacterized protein5.1e-1155.7Show/hide
Query:  MSKSKMKRASIGSRKSAIVHEESEARRKYQILLQDFLEVQKDFVSKKRKLQVLRQRKETHGAEVRFLRQRLEYLQKLQN
        MSK+  KR ++ S +S  V E +  R KYQ LL+DFLE+QKDFVSKKRKL+ + Q++E   AEVRFLRQR E+  K+Q+
Subjt:  MSKSKMKRASIGSRKSAIVHEESEARRKYQILLQDFLEVQKDFVSKKRKLQVLRQRKETHGAEVRFLRQRLEYLQKLQN

A0A4U5QM20 Uncharacterized protein5.1e-1156.41Show/hide
Query:  MSKSKMKRASIGSRKSAIVHEESEARRKYQILLQDFLEVQKDFVSKKRKLQVLRQRKETHGAEVRFLRQRLEYLQKLQ
        MSK+  KR ++ S +S  V+E +  R KYQ LL+DFLE+QKDFVSKKRKL+ + Q++E   AEVRFLRQR E+  K+Q
Subjt:  MSKSKMKRASIGSRKSAIVHEESEARRKYQILLQDFLEVQKDFVSKKRKLQVLRQRKETHGAEVRFLRQRLEYLQKLQ

A0A6J1BRD5 uncharacterized protein LOC1110050701.4e-6198.52Show/hide
Query:  MSKSKMKRASIGSRKSAIVHEESEARRKYQILLQDFLEVQKDFVSKKRKLQVLRQRKETHGAEVRFLRQRLEYLQKLQNRKHDSISEDLPMVLETKQNLD
        MS+SKMKRASIGSRKSAIVHEESEARRKYQILLQDFLEVQKDFVSKKRKLQVLRQRKET GAEVRFLRQRLEYLQKLQNRKHDSISEDLPMVLETKQNLD
Subjt:  MSKSKMKRASIGSRKSAIVHEESEARRKYQILLQDFLEVQKDFVSKKRKLQVLRQRKETHGAEVRFLRQRLEYLQKLQNRKHDSISEDLPMVLETKQNLD

Query:  GVEEEKFQNKALGINKMVGKIKTLGQARDINSVPS
        GVEEEKFQNKALGINKMVGKIKTLGQARDINSVPS
Subjt:  GVEEEKFQNKALGINKMVGKIKTLGQARDINSVPS

A0A6M2FAA9 Uncharacterized protein5.1e-1156.41Show/hide
Query:  MSKSKMKRASIGSRKSAIVHEESEARRKYQILLQDFLEVQKDFVSKKRKLQVLRQRKETHGAEVRFLRQRLEYLQKLQ
        MSK+  KR ++ S +S  V+E +  R KYQ LL+DFLE+QKDFVSKKRKL+ + Q++E   AEVRFLRQR E+  K+Q
Subjt:  MSKSKMKRASIGSRKSAIVHEESEARRKYQILLQDFLEVQKDFVSKKRKLQVLRQRKETHGAEVRFLRQRLEYLQKLQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCAAAGTCTAAGATGAAGAGAGCGTCGATCGGTTCTCGTAAATCCGCCATTGTTCATGAAGAATCGGAAGCAAGGCGTAAATATCAAATTCTGCTGCAAGATTTCTT
GGAAGTCCAGAAGGATTTTGTTTCGAAGAAGAGAAAATTGCAGGTTCTAAGACAGAGGAAGGAGACTCATGGAGCAGAAGTTAGATTTTTGAGACAAAGGCTCGAATATC
TGCAGAAGTTGCAGAATCGTAAACATGATTCAATTTCAGAGGACCTGCCCATGGTTTTGGAAACGAAGCAGAATCTGGATGGTGTGGAAGAGGAGAAGTTTCAGAATAAG
GCCTTAGGCATCAACAAAATGGTGGGAAAAATTAAAACTTTAGGGCAAGCGCGAGATATTAACTCGGTTCCTTCGTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCAAAGTCTAAGATGAAGAGAGCGTCGATCGGTTCTCGTAAATCCGCCATTGTTCATGAAGAATCGGAAGCAAGGCGTAAATATCAAATTCTGCTGCAAGATTTCTT
GGAAGTCCAGAAGGATTTTGTTTCGAAGAAGAGAAAATTGCAGGTTCTAAGACAGAGGAAGGAGACTCATGGAGCAGAAGTTAGATTTTTGAGACAAAGGCTCGAATATC
TGCAGAAGTTGCAGAATCGTAAACATGATTCAATTTCAGAGGACCTGCCCATGGTTTTGGAAACGAAGCAGAATCTGGATGGTGTGGAAGAGGAGAAGTTTCAGAATAAG
GCCTTAGGCATCAACAAAATGGTGGGAAAAATTAAAACTTTAGGGCAAGCGCGAGATATTAACTCGGTTCCTTCGTGA
Protein sequenceShow/hide protein sequence
MSKSKMKRASIGSRKSAIVHEESEARRKYQILLQDFLEVQKDFVSKKRKLQVLRQRKETHGAEVRFLRQRLEYLQKLQNRKHDSISEDLPMVLETKQNLDGVEEEKFQNK
ALGINKMVGKIKTLGQARDINSVPS