; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS024221 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS024221
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionUnknown protein
Genome locationscaffold119:178795..184737
RNA-Seq ExpressionMS024221
SyntenyMS024221
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF2562363.1 hypothetical protein F2Q70_00018698 [Brassica cretica]6.6e-0631.41Show/hide
Query:  SGCMRISTDAACSRDGLTTGLG-IVFCLPSGKLWQANARFLLSGLPPLHVELCVIKEALVLASNLEIGSLEISSGCLEAIWLVLKVEEIRNELGIWVEDI
        +G   + +DAA S   LT G G ++   P    +Q +  F+ S   PL  E   ++EA++    L++  +   S   + I   L   E   EL   V DI
Subjt:  SGCMRISTDAACSRDGLTTGLG-IVFCLPSGKLWQANARFLLSGLPPLHVELCVIKEALVLASNLEIGSLEISSGCLEAIWLVLKVEEIRNELGIWVEDI

Query:  TKLCKSFEGVRFVHTKHDRNWRVDAVAKSALLRRESMSWVRVFPSWLLREESLPPL
         KL + F+ V FV    +RN   DA+AK AL   E + ++R  PS  L E  + P+
Subjt:  TKLCKSFEGVRFVHTKHDRNWRVDAVAKSALLRRESMSWVRVFPSWLLREESLPPL

PRQ16761.1 putative ribonuclease H-like domain-containing protein [Rosa chinensis]2.5e-0527.5Show/hide
Query:  RISTDAACSRDGLTTGLGIVFCLPSGKLWQANARFLLSGLPPLHVELCVIKEALVLASNLEIGSLEISSGCLEAIWLVLKVEEIRNELGIWVEDITKLCK
        +++ DA+  ++G   G+G V     GK+  A    +   L PL  EL  +K  L  A      SL + + CLEA+ LV +  E   E+G+ VE++  L  
Subjt:  RISTDAACSRDGLTTGLGIVFCLPSGKLWQANARFLLSGLPPLHVELCVIKEALVLASNLEIGSLEISSGCLEAIWLVLKVEEIRNELGIWVEDITKLCK

Query:  SFEGVRFVHTKHDRNWRVDAVAKSALLRRESMSWVRVFPSWLLREESLPPLSNFALCGVL
             R      + N    ++AK          W  V P WL++  S   L  + + GV+
Subjt:  SFEGVRFVHTKHDRNWRVDAVAKSALLRRESMSWVRVFPSWLLREESLPPLSNFALCGVL

PRQ58041.1 putative ribonuclease H-like domain-containing protein [Rosa chinensis]5.6e-0526.71Show/hide
Query:  MRISTDAACSRDGLTTGLGIVFCLPSGKLWQANARFLLSGLPPLHVELCVIKEALVLASNLEIGSLEISSGCLEAIWLVLKVEEIRNELGIWVEDITKLC
        ++++ DA+  ++G   G+G V     GK+  A    +   L PL  EL  +K  L  A      SL + + CLEA+ LV++  E   E+G+ VE++  L 
Subjt:  MRISTDAACSRDGLTTGLGIVFCLPSGKLWQANARFLLSGLPPLHVELCVIKEALVLASNLEIGSLEISSGCLEAIWLVLKVEEIRNELGIWVEDITKLC

Query:  KSFEGVRFVHTKHDRNWRVDAVAKSALLRRESMSWVRVFPSWLLREESLPPLSNFALCGVL
              R      + N    ++A           W  V P WL++  S   L  + + GV+
Subjt:  KSFEGVRFVHTKHDRNWRVDAVAKSALLRRESMSWVRVFPSWLLREESLPPLSNFALCGVL

XP_027088768.1 uncharacterized protein LOC113710130 [Coffea arabica]2.7e-0729.05Show/hide
Query:  GCMRISTDAACSRDGLTTGLGIVFCLPSGKLWQANARFLLSGLPPLHVELCVIKEALVLASNLEIGSLEISSGCLEAIWLVLKVEEIRNELGIWVEDITK
        G ++++TDAA S++   TG+G+V     G+L +  AR  L    P   E   I+  + +A      ++E+ S C E + ++ K ++ +N + + +EDI  
Subjt:  GCMRISTDAACSRDGLTTGLGIVFCLPSGKLWQANARFLLSGLPPLHVELCVIKEALVLASNLEIGSLEISSGCLEAIWLVLKVEEIRNELGIWVEDITK

Query:  LCKSFEGVRFVHTKHDRNWRVDAVAKSALLRRESMSWVRVFPSWLLRE
        +   FE   F     D N    +VAK A+    ++ W   FP WL  E
Subjt:  LCKSFEGVRFVHTKHDRNWRVDAVAKSALLRRESMSWVRVFPSWLLRE

XP_027166351.1 uncharacterized protein LOC113766348 [Coffea eugenioides]6.6e-0627.03Show/hide
Query:  GCMRISTDAACSRDGLTTGLGIVFCLPSGKLWQANARFLLSGLPPLHVELCVIKEALVLASNLEIGSLEISSGCLEAIWLVLKVEEIRNELGIWVEDITK
        G ++++T+AA S++   TG+G+V      +L +  AR  +    P   E   I+  + +A      ++E+ S C + + ++ K ++ +N +G+ +EDI  
Subjt:  GCMRISTDAACSRDGLTTGLGIVFCLPSGKLWQANARFLLSGLPPLHVELCVIKEALVLASNLEIGSLEISSGCLEAIWLVLKVEEIRNELGIWVEDITK

Query:  LCKSFEGVRFVHTKHDRNWRVDAVAKSALLRRESMSWVRVFPSWLLRE
        +   FE   F     D N    +VAK A+    ++ W   FP WL +E
Subjt:  LCKSFEGVRFVHTKHDRNWRVDAVAKSALLRRESMSWVRVFPSWLLRE

TrEMBL top hitse value%identityAlignment
A0A2P6P4A4 Putative ribonuclease H-like domain-containing protein1.2e-0527.5Show/hide
Query:  RISTDAACSRDGLTTGLGIVFCLPSGKLWQANARFLLSGLPPLHVELCVIKEALVLASNLEIGSLEISSGCLEAIWLVLKVEEIRNELGIWVEDITKLCK
        +++ DA+  ++G   G+G V     GK+  A    +   L PL  EL  +K  L  A      SL + + CLEA+ LV +  E   E+G+ VE++  L  
Subjt:  RISTDAACSRDGLTTGLGIVFCLPSGKLWQANARFLLSGLPPLHVELCVIKEALVLASNLEIGSLEISSGCLEAIWLVLKVEEIRNELGIWVEDITKLCK

Query:  SFEGVRFVHTKHDRNWRVDAVAKSALLRRESMSWVRVFPSWLLREESLPPLSNFALCGVL
             R      + N    ++AK          W  V P WL++  S   L  + + GV+
Subjt:  SFEGVRFVHTKHDRNWRVDAVAKSALLRRESMSWVRVFPSWLLREESLPPLSNFALCGVL

A0A6J1DZK3 uncharacterized protein LOC1110249684.6e-0527.52Show/hide
Query:  LSGCMRISTDAACSRDGLTTGLGIVFCLPSGKLWQANARFLLSGLPPLHVELCVIKEALVLASNLEIGSLEISSGCLEAIWLVLKVEEIRNELGIWVEDI
        L G ++++TDAA S +G  +G+G++    + ++  A   F +    PL  ++  I+E L LA+ L +  + + +  LEA+ L+      + E   WVEDI
Subjt:  LSGCMRISTDAACSRDGLTTGLGIVFCLPSGKLWQANARFLLSGLPPLHVELCVIKEALVLASNLEIGSLEISSGCLEAIWLVLKVEEIRNELGIWVEDI

Query:  TKLCKSFEGVRFVHTKHDRNWRVDAVAKSALLRRESMSWVRVFPSWLLR
            + F+ + F H   + N     + +  +  R    W   FP WL R
Subjt:  TKLCKSFEGVRFVHTKHDRNWRVDAVAKSALLRRESMSWVRVFPSWLLR

A0A6P6UE91 uncharacterized protein LOC1137101301.3e-0729.05Show/hide
Query:  GCMRISTDAACSRDGLTTGLGIVFCLPSGKLWQANARFLLSGLPPLHVELCVIKEALVLASNLEIGSLEISSGCLEAIWLVLKVEEIRNELGIWVEDITK
        G ++++TDAA S++   TG+G+V     G+L +  AR  L    P   E   I+  + +A      ++E+ S C E + ++ K ++ +N + + +EDI  
Subjt:  GCMRISTDAACSRDGLTTGLGIVFCLPSGKLWQANARFLLSGLPPLHVELCVIKEALVLASNLEIGSLEISSGCLEAIWLVLKVEEIRNELGIWVEDITK

Query:  LCKSFEGVRFVHTKHDRNWRVDAVAKSALLRRESMSWVRVFPSWLLRE
        +   FE   F     D N    +VAK A+    ++ W   FP WL  E
Subjt:  LCKSFEGVRFVHTKHDRNWRVDAVAKSALLRRESMSWVRVFPSWLLRE

A0A803PLS0 Uncharacterized protein6.1e-0529.29Show/hide
Query:  ISTDAACSRDGLTTGLGIVFCLPSGKLWQANARFLLSGLPPLHVELCVIKEALVLASNLEIGSLEISSGCLEAIWLVLKVEEIRNELGIWVEDITKLCK-
        I+ DA   + GL +GLG V    +G +  A A  L   LPPL +EL  IK  +       +    + + CL+A+ L+   E     +   ++ I  L   
Subjt:  ISTDAACSRDGLTTGLGIVFCLPSGKLWQANARFLLSGLPPLHVELCVIKEALVLASNLEIGSLEISSGCLEAIWLVLKVEEIRNELGIWVEDITKLCK-

Query:  -SFEGVRFVHTKHDRNWRVDAVAKSALLRRESMSWVRVFP
         SF G+ FV  +  R     A+A   L+ ++S  W+ V P
Subjt:  -SFEGVRFVHTKHDRNWRVDAVAKSALLRRESMSWVRVFP

A0A803QQT2 Uncharacterized protein1.2e-0530Show/hide
Query:  ISTDAACSRDGLTTGLGIVFCLPSGKLWQANARFLLSGLPPLHVELCVIKEALVLASNLEIGSLEISSGCLEAIWLVLKVEEIRNELGIWVEDITKLCK-
        I+ DA   + GL +GLG V    +G +  A A  L   LPPL +EL  IK+ + +     +    + + CL+A+ L+   E    ++   +  I  L   
Subjt:  ISTDAACSRDGLTTGLGIVFCLPSGKLWQANARFLLSGLPPLHVELCVIKEALVLASNLEIGSLEISSGCLEAIWLVLKVEEIRNELGIWVEDITKLCK-

Query:  -SFEGVRFVHTKHDRNWRVDAVAKSALLRRESMSWVRVFP
         SF G+ FV    + N    A+A  AL+ + S  W+ V P
Subjt:  -SFEGVRFVHTKHDRNWRVDAVAKSALLRRESMSWVRVFP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTACAGAGGCCTTGGTTGATGAATGGAGGAAACTATCATTGACTTCCGAAGAAGAGGAAGTTACAGTGGATGTGGACGGGGTAGCGGCACTGGATGTTGAAAAGTG
CCTGGACGGGGATGACAAAGGAGGAGGAAAGGGCCAGAGGGTGGTTTTGAACAGAGGAAGTGTGAGAGAGGTGGATAATGGGGCCCTAACAGACAAGCAGATTGAGAAGG
GGAGGGCAAATTCTGTGGGGCGGGTGGAGGTAGTTTCGAGGGAGCCTGTTGGCTCTTTGAAGGAGAATATGCCTGTAAGTGGCCCTATAAGTGCCCTAGAAGGTGGGGCA
GAGCTGAAGGTTCTAATTGAGGGTAAGAGGTGGGGGTCAAGTAGTAGTGGGGGTGATTTGGGCCTAGAGGATTTGGTTAGGAAGGATGTCATGGTGTGCAATAAGATTAG
TGGGAGTGACAGAGTGATGCTTCAAGAGAGGCAGCTGGAACAGAAGAAGGTTCAAGATGAATTTGCTGATGGTTTGCAAAATCTGATGGCTGTAGACTTGAGTTGTGCGG
TCAAGGCCCAGTTGGTAGATAAAGAGTCTCAAGAGGGGAGGGCCGTCAATGTCCGAGGATGGAAGAGGAAAGCCAGGAATTTGGGTGTAGGGGGTGAAGGAGTGAAGCAA
GTGAATGGTAAGAGGAAGATGGACGATATCCAGGTTGACAAGGAGGCGGGTGCTAAACGTTGTGAGGTGAGTAGAATGGTTGGAGTTGAGGCTGGGAGGAGGCGCTCAAC
TCAGGCGATGGGGGCTCCCATTACAGAGATGGCGACAGAGTCAAGGGAGTTGTCGGGATGCATGAGAATCTCTACCGACGCTGCCTGTTCTCGAGATGGGTTGACAACAG
GCCTAGGGATTGTTTTCTGTTTACCTTCGGGCAAGCTATGGCAAGCAAATGCAAGATTTCTTCTTTCTGGATTGCCACCGCTACACGTAGAGTTGTGCGTCATCAAGGAG
GCCCTAGTTTTGGCGTCAAATTTAGAAATTGGATCTTTGGAAATATCCTCTGGCTGTTTAGAGGCAATCTGGTTGGTGCTGAAGGTAGAGGAAATTAGAAATGAACTTGG
CATATGGGTAGAAGACATTACCAAATTGTGCAAGAGTTTTGAAGGGGTGCGATTTGTGCATACCAAACATGATAGGAATTGGAGAGTTGATGCAGTGGCGAAATCGGCGT
TGTTGAGGCGTGAATCGATGAGTTGGGTTAGGGTTTTCCCTTCGTGGTTGCTGAGGGAAGAGAGTCTTCCCCCTCTGTCTAATTTTGCCCTTTGTGGTGTTTTATTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGGTACAGAGGCCTTGGTTGATGAATGGAGGAAACTATCATTGACTTCCGAAGAAGAGGAAGTTACAGTGGATGTGGACGGGGTAGCGGCACTGGATGTTGAAAAGTG
CCTGGACGGGGATGACAAAGGAGGAGGAAAGGGCCAGAGGGTGGTTTTGAACAGAGGAAGTGTGAGAGAGGTGGATAATGGGGCCCTAACAGACAAGCAGATTGAGAAGG
GGAGGGCAAATTCTGTGGGGCGGGTGGAGGTAGTTTCGAGGGAGCCTGTTGGCTCTTTGAAGGAGAATATGCCTGTAAGTGGCCCTATAAGTGCCCTAGAAGGTGGGGCA
GAGCTGAAGGTTCTAATTGAGGGTAAGAGGTGGGGGTCAAGTAGTAGTGGGGGTGATTTGGGCCTAGAGGATTTGGTTAGGAAGGATGTCATGGTGTGCAATAAGATTAG
TGGGAGTGACAGAGTGATGCTTCAAGAGAGGCAGCTGGAACAGAAGAAGGTTCAAGATGAATTTGCTGATGGTTTGCAAAATCTGATGGCTGTAGACTTGAGTTGTGCGG
TCAAGGCCCAGTTGGTAGATAAAGAGTCTCAAGAGGGGAGGGCCGTCAATGTCCGAGGATGGAAGAGGAAAGCCAGGAATTTGGGTGTAGGGGGTGAAGGAGTGAAGCAA
GTGAATGGTAAGAGGAAGATGGACGATATCCAGGTTGACAAGGAGGCGGGTGCTAAACGTTGTGAGGTGAGTAGAATGGTTGGAGTTGAGGCTGGGAGGAGGCGCTCAAC
TCAGGCGATGGGGGCTCCCATTACAGAGATGGCGACAGAGTCAAGGGAGTTGTCGGGATGCATGAGAATCTCTACCGACGCTGCCTGTTCTCGAGATGGGTTGACAACAG
GCCTAGGGATTGTTTTCTGTTTACCTTCGGGCAAGCTATGGCAAGCAAATGCAAGATTTCTTCTTTCTGGATTGCCACCGCTACACGTAGAGTTGTGCGTCATCAAGGAG
GCCCTAGTTTTGGCGTCAAATTTAGAAATTGGATCTTTGGAAATATCCTCTGGCTGTTTAGAGGCAATCTGGTTGGTGCTGAAGGTAGAGGAAATTAGAAATGAACTTGG
CATATGGGTAGAAGACATTACCAAATTGTGCAAGAGTTTTGAAGGGGTGCGATTTGTGCATACCAAACATGATAGGAATTGGAGAGTTGATGCAGTGGCGAAATCGGCGT
TGTTGAGGCGTGAATCGATGAGTTGGGTTAGGGTTTTCCCTTCGTGGTTGCTGAGGGAAGAGAGTCTTCCCCCTCTGTCTAATTTTGCCCTTTGTGGTGTTTTATTTTAA
Protein sequenceShow/hide protein sequence
MGTEALVDEWRKLSLTSEEEEVTVDVDGVAALDVEKCLDGDDKGGGKGQRVVLNRGSVREVDNGALTDKQIEKGRANSVGRVEVVSREPVGSLKENMPVSGPISALEGGA
ELKVLIEGKRWGSSSSGGDLGLEDLVRKDVMVCNKISGSDRVMLQERQLEQKKVQDEFADGLQNLMAVDLSCAVKAQLVDKESQEGRAVNVRGWKRKARNLGVGGEGVKQ
VNGKRKMDDIQVDKEAGAKRCEVSRMVGVEAGRRRSTQAMGAPITEMATESRELSGCMRISTDAACSRDGLTTGLGIVFCLPSGKLWQANARFLLSGLPPLHVELCVIKE
ALVLASNLEIGSLEISSGCLEAIWLVLKVEEIRNELGIWVEDITKLCKSFEGVRFVHTKHDRNWRVDAVAKSALLRRESMSWVRVFPSWLLREESLPPLSNFALCGVLF