; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS024312 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS024312
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionAT-hook motif nuclear-localized protein
Genome locationscaffold30:2759697..2760173
RNA-Seq ExpressionMS024312
SyntenyMS024312
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0010208 - pollen wall assembly (biological process)
GO:0010228 - vegetative to reproductive phase transition of meristem (biological process)
GO:0010529 - negative regulation of transposition (biological process)
GO:0035067 - negative regulation of histone acetylation (biological process)
GO:1900111 - positive regulation of histone H3-K9 dimethylation (biological process)
GO:0005634 - nucleus (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003680 - AT DNA binding (molecular function)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
GO:0031490 - chromatin DNA binding (molecular function)
InterPro domainsIPR005175 - PPC domain
IPR014476 - AT-hook motif nuclear-localized protein 15-29


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0058128.1 AT-hook motif nuclear-localized protein 16 [Cucumis melo var. makuwa]3.2e-6790.26Show/hide
Query:  AAGDQ-DMALHSLGSKVSVLSDHEPEKCGHVNNNNVGNHQQRPCFDPNSLVSPKAVPPISVAAEGDQALRRPRGRPAGSKNKPKPPIIVTRDSANALRAH
        A GDQ DMA+HSLGSK+S++S+HEPEKCG  NNN   NHQQRPCFDP SLVSPK VPPISVAAE DQALRRPRGRPAGSKNKPKPPIIVTRDSANALRAH
Subjt:  AAGDQ-DMALHSLGSKVSVLSDHEPEKCGHVNNNNVGNHQQRPCFDPNSLVSPKAVPPISVAAEGDQALRRPRGRPAGSKNKPKPPIIVTRDSANALRAH

Query:  AIEVSSGCDVNESLSNFARRKQRGVCILSGSGCVTNVTLRQAASSGAIVTLHGR
        AIEVSSGCDVNESLSNFARRKQRGVCILSGSGCVTNVTLRQAASSGAIVTLHGR
Subjt:  AIEVSSGCDVNESLSNFARRKQRGVCILSGSGCVTNVTLRQAASSGAIVTLHGR

KAE8652473.1 hypothetical protein Csa_013658 [Cucumis sativus]1.9e-6790.26Show/hide
Query:  AAGDQ-DMALHSLGSKVSVLSDHEPEKCGHVNNNNVGNHQQRPCFDPNSLVSPKAVPPISVAAEGDQALRRPRGRPAGSKNKPKPPIIVTRDSANALRAH
        A GDQ DMA+HSLGSK+S++SDHEPEKCG  NNN   NHQQRPCFDP SLVSPK VPPISVAAE DQALRRPRGRPAGSKNKPKPPIIVTRDSANALRAH
Subjt:  AAGDQ-DMALHSLGSKVSVLSDHEPEKCGHVNNNNVGNHQQRPCFDPNSLVSPKAVPPISVAAEGDQALRRPRGRPAGSKNKPKPPIIVTRDSANALRAH

Query:  AIEVSSGCDVNESLSNFARRKQRGVCILSGSGCVTNVTLRQAASSGAIVTLHGR
        AIEVS+GCDVNESLSNFARRKQRGVCILSGSGCVTNVTLRQAASSGAIVTLHGR
Subjt:  AIEVSSGCDVNESLSNFARRKQRGVCILSGSGCVTNVTLRQAASSGAIVTLHGR

XP_011649113.1 AT-hook motif nuclear-localized protein 16 [Cucumis sativus]1.9e-6788.54Show/hide
Query:  LMAAAGDQ-DMALHSLGSKVSVLSDHEPEKCGHVNNNNVGNHQQRPCFDPNSLVSPKAVPPISVAAEGDQALRRPRGRPAGSKNKPKPPIIVTRDSANAL
        +  A GDQ DMA+HSLGSK+S++SDHEPEKCG  NNN   NHQQRPCFDP SLVSPK VPPISVAAE DQALRRPRGRPAGSKNKPKPPIIVTRDSANAL
Subjt:  LMAAAGDQ-DMALHSLGSKVSVLSDHEPEKCGHVNNNNVGNHQQRPCFDPNSLVSPKAVPPISVAAEGDQALRRPRGRPAGSKNKPKPPIIVTRDSANAL

Query:  RAHAIEVSSGCDVNESLSNFARRKQRGVCILSGSGCVTNVTLRQAASSGAIVTLHGR
        RAHAIEVS+GCDVNESLSNFARRKQRGVCILSGSGCVTNVTLRQAASSGAIVTLHGR
Subjt:  RAHAIEVSSGCDVNESLSNFARRKQRGVCILSGSGCVTNVTLRQAASSGAIVTLHGR

XP_022135397.1 AT-hook motif nuclear-localized protein 16 [Momordica charantia]1.2e-7999.37Show/hide
Query:  MQLMAAAGDQDMALHSLGSKVSVLSDHEPEKCGHVNNNNVGNHQQRPCFDPNSLVSPKAVPPISVAAEGDQALRRPRGRPAGSKNKPKPPIIVTRDSANA
        MQLMAAAGDQDMALHSLGSKVSVLSDHEPEKCGHV NNNVGNHQQRPCFDPNSLVSPKAVPPISVAAEGDQALRRPRGRPAGSKNKPKPPIIVTRDSANA
Subjt:  MQLMAAAGDQDMALHSLGSKVSVLSDHEPEKCGHVNNNNVGNHQQRPCFDPNSLVSPKAVPPISVAAEGDQALRRPRGRPAGSKNKPKPPIIVTRDSANA

Query:  LRAHAIEVSSGCDVNESLSNFARRKQRGVCILSGSGCVTNVTLRQAASSGAIVTLHGR
        LRAHAIEVSSGCDVNESLSNFARRKQRGVCILSGSGCVTNVTLRQAASSGAIVTLHGR
Subjt:  LRAHAIEVSSGCDVNESLSNFARRKQRGVCILSGSGCVTNVTLRQAASSGAIVTLHGR

XP_038880552.1 AT-hook motif nuclear-localized protein 16 [Benincasa hispida]6.4e-6888.46Show/hide
Query:  LMAAAGDQDMALHSLGSKVSVLSDHEPEKCGHVNNNNVGNHQQRPCFDPNSLVSPKAVPPISVAAEGDQALRRPRGRPAGSKNKPKPPIIVTRDSANALR
        +  A GDQDMA+HSLGSK+SV+S+HEPEKCG   +N   NHQQRPCFDP SLVSPKAVPPISVA E DQALRRPRGRPAGSKNKPKPPIIVTRDSANALR
Subjt:  LMAAAGDQDMALHSLGSKVSVLSDHEPEKCGHVNNNNVGNHQQRPCFDPNSLVSPKAVPPISVAAEGDQALRRPRGRPAGSKNKPKPPIIVTRDSANALR

Query:  AHAIEVSSGCDVNESLSNFARRKQRGVCILSGSGCVTNVTLRQAASSGAIVTLHGR
        AHAIEVSSGCDVNESLSNFARRKQRGVCILSGSGCVTNVTLRQAASSGAIVTLHGR
Subjt:  AHAIEVSSGCDVNESLSNFARRKQRGVCILSGSGCVTNVTLRQAASSGAIVTLHGR

TrEMBL top hitse value%identityAlignment
A0A0A0LPP3 PPC domain-containing protein9.0e-6890.26Show/hide
Query:  AAGDQ-DMALHSLGSKVSVLSDHEPEKCGHVNNNNVGNHQQRPCFDPNSLVSPKAVPPISVAAEGDQALRRPRGRPAGSKNKPKPPIIVTRDSANALRAH
        A GDQ DMA+HSLGSK+S++SDHEPEKCG  NNN   NHQQRPCFDP SLVSPK VPPISVAAE DQALRRPRGRPAGSKNKPKPPIIVTRDSANALRAH
Subjt:  AAGDQ-DMALHSLGSKVSVLSDHEPEKCGHVNNNNVGNHQQRPCFDPNSLVSPKAVPPISVAAEGDQALRRPRGRPAGSKNKPKPPIIVTRDSANALRAH

Query:  AIEVSSGCDVNESLSNFARRKQRGVCILSGSGCVTNVTLRQAASSGAIVTLHGR
        AIEVS+GCDVNESLSNFARRKQRGVCILSGSGCVTNVTLRQAASSGAIVTLHGR
Subjt:  AIEVSSGCDVNESLSNFARRKQRGVCILSGSGCVTNVTLRQAASSGAIVTLHGR

A0A1S3BX46 AT-hook motif nuclear-localized protein 161.5e-6788.54Show/hide
Query:  LMAAAGDQ-DMALHSLGSKVSVLSDHEPEKCGHVNNNNVGNHQQRPCFDPNSLVSPKAVPPISVAAEGDQALRRPRGRPAGSKNKPKPPIIVTRDSANAL
        +  A GDQ DMA+HSLGSK+S++S+HEPEKCG  NNN   NHQQRPCFDP SLVSPK VPPISVAAE DQALRRPRGRPAGSKNKPKPPIIVTRDSANAL
Subjt:  LMAAAGDQ-DMALHSLGSKVSVLSDHEPEKCGHVNNNNVGNHQQRPCFDPNSLVSPKAVPPISVAAEGDQALRRPRGRPAGSKNKPKPPIIVTRDSANAL

Query:  RAHAIEVSSGCDVNESLSNFARRKQRGVCILSGSGCVTNVTLRQAASSGAIVTLHGR
        RAHAIEVSSGCDVNESLSNFARRKQRGVCILSGSGCVTNVTLRQAASSGAIVTLHGR
Subjt:  RAHAIEVSSGCDVNESLSNFARRKQRGVCILSGSGCVTNVTLRQAASSGAIVTLHGR

A0A5A7USJ9 AT-hook motif nuclear-localized protein 161.5e-6790.26Show/hide
Query:  AAGDQ-DMALHSLGSKVSVLSDHEPEKCGHVNNNNVGNHQQRPCFDPNSLVSPKAVPPISVAAEGDQALRRPRGRPAGSKNKPKPPIIVTRDSANALRAH
        A GDQ DMA+HSLGSK+S++S+HEPEKCG  NNN   NHQQRPCFDP SLVSPK VPPISVAAE DQALRRPRGRPAGSKNKPKPPIIVTRDSANALRAH
Subjt:  AAGDQ-DMALHSLGSKVSVLSDHEPEKCGHVNNNNVGNHQQRPCFDPNSLVSPKAVPPISVAAEGDQALRRPRGRPAGSKNKPKPPIIVTRDSANALRAH

Query:  AIEVSSGCDVNESLSNFARRKQRGVCILSGSGCVTNVTLRQAASSGAIVTLHGR
        AIEVSSGCDVNESLSNFARRKQRGVCILSGSGCVTNVTLRQAASSGAIVTLHGR
Subjt:  AIEVSSGCDVNESLSNFARRKQRGVCILSGSGCVTNVTLRQAASSGAIVTLHGR

A0A6J1C2K6 AT-hook motif nuclear-localized protein 166.0e-8099.37Show/hide
Query:  MQLMAAAGDQDMALHSLGSKVSVLSDHEPEKCGHVNNNNVGNHQQRPCFDPNSLVSPKAVPPISVAAEGDQALRRPRGRPAGSKNKPKPPIIVTRDSANA
        MQLMAAAGDQDMALHSLGSKVSVLSDHEPEKCGHV NNNVGNHQQRPCFDPNSLVSPKAVPPISVAAEGDQALRRPRGRPAGSKNKPKPPIIVTRDSANA
Subjt:  MQLMAAAGDQDMALHSLGSKVSVLSDHEPEKCGHVNNNNVGNHQQRPCFDPNSLVSPKAVPPISVAAEGDQALRRPRGRPAGSKNKPKPPIIVTRDSANA

Query:  LRAHAIEVSSGCDVNESLSNFARRKQRGVCILSGSGCVTNVTLRQAASSGAIVTLHGR
        LRAHAIEVSSGCDVNESLSNFARRKQRGVCILSGSGCVTNVTLRQAASSGAIVTLHGR
Subjt:  LRAHAIEVSSGCDVNESLSNFARRKQRGVCILSGSGCVTNVTLRQAASSGAIVTLHGR

A0A6J1KL97 AT-hook motif nuclear-localized protein 16-like7.6e-5981.63Show/hide
Query:  MALHSLGSKVSVLSDHEPEKCGHVNNNNVGNHQQRPCFDPNSLVSPKAVPPISVAAEGDQALRRPRGRPAGSKNKPKPPIIVTRDSANALRAHAIEVSSG
        + +H++      +  HEPEKCG     N  NHQQRPCFDP+SL+SPKAVPPISVAAE DQALRRPRGRPAGSKNKPKPPIIVTRDSANALRAHAIEVSSG
Subjt:  MALHSLGSKVSVLSDHEPEKCGHVNNNNVGNHQQRPCFDPNSLVSPKAVPPISVAAEGDQALRRPRGRPAGSKNKPKPPIIVTRDSANALRAHAIEVSSG

Query:  CDVNESLSNFARRKQRGVCILSGSGCVTNVTLRQAASSGAIVTLHGR
        CDVNESLS+FARRKQRGVCILSGSGCV NVTLRQAASSG IVTLHGR
Subjt:  CDVNESLSNFARRKQRGVCILSGSGCVTNVTLRQAASSGAIVTLHGR

SwissProt top hitse value%identityAlignment
O22130 AT-hook motif nuclear-localized protein 223.6e-2969.66Show/hide
Query:  RRPRGRPAGSKNKPKPPIIVTRDSANALRAHAIEVSSGCDVNESLSNFARRKQRGVCILSGSGCVTNVTLRQAAS----SGAIVTLHGR
        RRPRGRPAGSKNKPKPPII+TRDSANAL++H +EV++GCDV ES++ FARR+QRG+C+LSG+G VTNVT+RQ AS      ++V LHGR
Subjt:  RRPRGRPAGSKNKPKPPIIVTRDSANALRAHAIEVSSGCDVNESLSNFARRKQRGVCILSGSGCVTNVTLRQAAS----SGAIVTLHGR

O49662 AT-hook motif nuclear-localized protein 242.7e-2968.13Show/hide
Query:  QALRRPRGRPAGSKNKPKPPIIVTRDSANALRAHAIEVSSGCDVNESLSNFARRKQRGVCILSGSGCVTNVTLRQAA---SSGAIVTLHGR
        Q  RRPRGRPAGSKNKPKPPII+TRDSANALR H +E+  GCD+ ES++ FARR+QRGVC++SG+G VTNVT+RQ     S G++V+LHGR
Subjt:  QALRRPRGRPAGSKNKPKPPIIVTRDSANALRAHAIEVSSGCDVNESLSNFARRKQRGVCILSGSGCVTNVTLRQAA---SSGAIVTLHGR

O82166 AT-hook motif nuclear-localized protein 216.5e-3169.66Show/hide
Query:  GDQALRRPRGRPAGSKNKPKPPIIVTRDSANALRAHAIEVSSGCDVNESLSNFARRKQRGVCILSGSGCVTNVTLRQAASSGAIVTLHG
        GD  +RRPRGRPAGSKNKPKPP+IVTR+SAN LRAH +EV SGCDV E +S +ARR+QRG+C+LSG+G VTNV++RQ  ++GA+VTL G
Subjt:  GDQALRRPRGRPAGSKNKPKPPIIVTRDSANALRAHAIEVSSGCDVNESLSNFARRKQRGVCILSGSGCVTNVTLRQAASSGAIVTLHG

Q9SJG4 AT-hook motif nuclear-localized protein 166.5e-3959.87Show/hide
Query:  AGDQDMALHSLGSKVSVLSDHEPEKCGHVNNNNVGNHQQRPCFDPNSLVSPKAVPPISVAAEGDQALRRPRGRPAGSKNKPKPPIIVTRDSANALRAHAI
        AG   +   S+GSK   + +HE  + G+ NN              N    PKAV P+S + EG+ A +RPRGRPAGSKNKPKPPIIVT DS N+LRA+A+
Subjt:  AGDQDMALHSLGSKVSVLSDHEPEKCGHVNNNNVGNHQQRPCFDPNSLVSPKAVPPISVAAEGDQALRRPRGRPAGSKNKPKPPIIVTRDSANALRAHAI

Query:  EVSSGCDVNESLSNFARRKQRGVCILSGSGCVTNVTLRQAASSGAIVTLHGR
        E+SSGCD+ E+LS+FARRKQRG+CILS +GCVTNVTLRQ ASSGAIVTLHGR
Subjt:  EVSSGCDVNESLSNFARRKQRGVCILSGSGCVTNVTLRQAASSGAIVTLHGR

Q9SZ70 AT-hook motif nuclear-localized protein 264.6e-2965.93Show/hide
Query:  GDQALRRPRGRPAGSKNKPKPPIIVTRDSANALRAHAIEVSSGCDVNESLSNFARRKQRGVCILSGSGCVTNVTLRQAAS-SGAIVTLHGR
        G+Q  RRPRGRPAGSKNKPK PII+TRDSANALR H +E+  GCD+ + ++ FARR+QRGVC++SG+G VTNVT+RQ  S  G++V+LHGR
Subjt:  GDQALRRPRGRPAGSKNKPKPPIIVTRDSANALRAHAIEVSSGCDVNESLSNFARRKQRGVCILSGSGCVTNVTLRQAAS-SGAIVTLHGR

Arabidopsis top hitse value%identityAlignment
AT2G35270.1 Predicted AT-hook DNA-binding family protein4.6e-3269.66Show/hide
Query:  GDQALRRPRGRPAGSKNKPKPPIIVTRDSANALRAHAIEVSSGCDVNESLSNFARRKQRGVCILSGSGCVTNVTLRQAASSGAIVTLHG
        GD  +RRPRGRPAGSKNKPKPP+IVTR+SAN LRAH +EV SGCDV E +S +ARR+QRG+C+LSG+G VTNV++RQ  ++GA+VTL G
Subjt:  GDQALRRPRGRPAGSKNKPKPPIIVTRDSANALRAHAIEVSSGCDVNESLSNFARRKQRGVCILSGSGCVTNVTLRQAASSGAIVTLHG

AT2G42940.1 Predicted AT-hook DNA-binding family protein4.6e-4059.87Show/hide
Query:  AGDQDMALHSLGSKVSVLSDHEPEKCGHVNNNNVGNHQQRPCFDPNSLVSPKAVPPISVAAEGDQALRRPRGRPAGSKNKPKPPIIVTRDSANALRAHAI
        AG   +   S+GSK   + +HE  + G+ NN              N    PKAV P+S + EG+ A +RPRGRPAGSKNKPKPPIIVT DS N+LRA+A+
Subjt:  AGDQDMALHSLGSKVSVLSDHEPEKCGHVNNNNVGNHQQRPCFDPNSLVSPKAVPPISVAAEGDQALRRPRGRPAGSKNKPKPPIIVTRDSANALRAHAI

Query:  EVSSGCDVNESLSNFARRKQRGVCILSGSGCVTNVTLRQAASSGAIVTLHGR
        E+SSGCD+ E+LS+FARRKQRG+CILS +GCVTNVTLRQ ASSGAIVTLHGR
Subjt:  EVSSGCDVNESLSNFARRKQRGVCILSGSGCVTNVTLRQAASSGAIVTLHGR

AT2G45430.1 AT-hook motif nuclear-localized protein 222.5e-3069.66Show/hide
Query:  RRPRGRPAGSKNKPKPPIIVTRDSANALRAHAIEVSSGCDVNESLSNFARRKQRGVCILSGSGCVTNVTLRQAAS----SGAIVTLHGR
        RRPRGRPAGSKNKPKPPII+TRDSANAL++H +EV++GCDV ES++ FARR+QRG+C+LSG+G VTNVT+RQ AS      ++V LHGR
Subjt:  RRPRGRPAGSKNKPKPPIIVTRDSANALRAHAIEVSSGCDVNESLSNFARRKQRGVCILSGSGCVTNVTLRQAAS----SGAIVTLHGR

AT4G12050.1 Predicted AT-hook DNA-binding family protein3.3e-3065.93Show/hide
Query:  GDQALRRPRGRPAGSKNKPKPPIIVTRDSANALRAHAIEVSSGCDVNESLSNFARRKQRGVCILSGSGCVTNVTLRQAAS-SGAIVTLHGR
        G+Q  RRPRGRPAGSKNKPK PII+TRDSANALR H +E+  GCD+ + ++ FARR+QRGVC++SG+G VTNVT+RQ  S  G++V+LHGR
Subjt:  GDQALRRPRGRPAGSKNKPKPPIIVTRDSANALRAHAIEVSSGCDVNESLSNFARRKQRGVCILSGSGCVTNVTLRQAAS-SGAIVTLHGR

AT4G22810.1 Predicted AT-hook DNA-binding family protein1.9e-3068.13Show/hide
Query:  QALRRPRGRPAGSKNKPKPPIIVTRDSANALRAHAIEVSSGCDVNESLSNFARRKQRGVCILSGSGCVTNVTLRQAA---SSGAIVTLHGR
        Q  RRPRGRPAGSKNKPKPPII+TRDSANALR H +E+  GCD+ ES++ FARR+QRGVC++SG+G VTNVT+RQ     S G++V+LHGR
Subjt:  QALRRPRGRPAGSKNKPKPPIIVTRDSANALRAHAIEVSSGCDVNESLSNFARRKQRGVCILSGSGCVTNVTLRQAA---SSGAIVTLHGR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAATTAATGGCTGCAGCTGGTGATCAAGATATGGCACTTCACTCTCTTGGGTCTAAAGTTTCTGTGCTTTCAGATCATGAACCTGAAAAATGTGGCCATGTTAACAA
CAATAATGTTGGCAATCACCAACAAAGACCTTGCTTTGATCCTAATTCTCTTGTTTCTCCCAAGGCTGTGCCGCCGATTTCGGTGGCGGCTGAGGGCGATCAAGCTCTCC
GCCGCCCTCGAGGGCGTCCGGCCGGCTCCAAAAACAAGCCTAAACCACCCATCATTGTCACCCGAGATAGCGCCAATGCTCTCCGCGCTCATGCCATCGAAGTCAGCTCT
GGCTGTGACGTTAACGAGAGCCTATCCAACTTCGCGCGAAGGAAACAACGTGGCGTTTGTATTTTGAGCGGGAGTGGATGTGTCACCAACGTCACGCTCCGCCAGGCTGC
CTCCTCAGGCGCCATCGTCACTCTTCACGGCCGGTAA
mRNA sequenceShow/hide mRNA sequence
ATGCAATTAATGGCTGCAGCTGGTGATCAAGATATGGCACTTCACTCTCTTGGGTCTAAAGTTTCTGTGCTTTCAGATCATGAACCTGAAAAATGTGGCCATGTTAACAA
CAATAATGTTGGCAATCACCAACAAAGACCTTGCTTTGATCCTAATTCTCTTGTTTCTCCCAAGGCTGTGCCGCCGATTTCGGTGGCGGCTGAGGGCGATCAAGCTCTCC
GCCGCCCTCGAGGGCGTCCGGCCGGCTCCAAAAACAAGCCTAAACCACCCATCATTGTCACCCGAGATAGCGCCAATGCTCTCCGCGCTCATGCCATCGAAGTCAGCTCT
GGCTGTGACGTTAACGAGAGCCTATCCAACTTCGCGCGAAGGAAACAACGTGGCGTTTGTATTTTGAGCGGGAGTGGATGTGTCACCAACGTCACGCTCCGCCAGGCTGC
CTCCTCAGGCGCCATCGTCACTCTTCACGGCCGGTAA
Protein sequenceShow/hide protein sequence
MQLMAAAGDQDMALHSLGSKVSVLSDHEPEKCGHVNNNNVGNHQQRPCFDPNSLVSPKAVPPISVAAEGDQALRRPRGRPAGSKNKPKPPIIVTRDSANALRAHAIEVSS
GCDVNESLSNFARRKQRGVCILSGSGCVTNVTLRQAASSGAIVTLHGR