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MS024320 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS024320
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionTransmembrane protein 230
Genome locationscaffold30:3167465..3167814
RNA-Seq ExpressionMS024320
SyntenyMS024320
Gene Ontology termsGO:0005768 - endosome (cellular component)
GO:0005776 - autophagosome (cellular component)
GO:0005794 - Golgi apparatus (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR008590 - Transmembrane protein 230/134
IPR044234 - Transmembrane protein 230


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7021684.1 Transmembrane protein-like protein [Cucurbita argyrosperma subsp. argyrosperma]2.1e-3690.91Show/hide
Query:  MMDSPFAVNNRPPFKEIALAVALLVFGTIGIVVGIVMASNRVGGDRAHGVFFSLLGGLLFIPGFYYTRIAYYAYKGFKGFSFSNIPPV
        MMDSPF VNNRPP KEIALAV+LL FG IGIVVGI MASNRVGGDRAHGVFFSLLG LLFIPGFYYTRIAYYAYKG+KGFSFSNIPPV
Subjt:  MMDSPFAVNNRPPFKEIALAVALLVFGTIGIVVGIVMASNRVGGDRAHGVFFSLLGGLLFIPGFYYTRIAYYAYKGFKGFSFSNIPPV

XP_004146339.1 transmembrane protein 230 [Cucumis sativus]1.6e-3689.77Show/hide
Query:  MMDSPFAVNNRPPFKEIALAVALLVFGTIGIVVGIVMASNRVGGDRAHGVFFSLLGGLLFIPGFYYTRIAYYAYKGFKGFSFSNIPPV
        MMDSPF VNNRPP KEIALAV+LLVFG IGI+VG  MASNRVGGDR HGVFFSLLGGLLFIPGFYYTRIAYYAYKG+KGFSFSNIPPV
Subjt:  MMDSPFAVNNRPPFKEIALAVALLVFGTIGIVVGIVMASNRVGGDRAHGVFFSLLGGLLFIPGFYYTRIAYYAYKGFKGFSFSNIPPV

XP_008453547.1 PREDICTED: transmembrane protein 230-like [Cucumis melo]5.5e-3790.91Show/hide
Query:  MMDSPFAVNNRPPFKEIALAVALLVFGTIGIVVGIVMASNRVGGDRAHGVFFSLLGGLLFIPGFYYTRIAYYAYKGFKGFSFSNIPPV
        MMDSPF VNNRPP KEIALAV+LLVFG IGI+VG  MASNRVGGDRAHGVFFSLLGGLLFIPGFYYTRIAYYAYKG+KGFSFSNIPPV
Subjt:  MMDSPFAVNNRPPFKEIALAVALLVFGTIGIVVGIVMASNRVGGDRAHGVFFSLLGGLLFIPGFYYTRIAYYAYKGFKGFSFSNIPPV

XP_022134647.1 transmembrane protein 230 [Momordica charantia]8.2e-41100Show/hide
Query:  MMDSPFAVNNRPPFKEIALAVALLVFGTIGIVVGIVMASNRVGGDRAHGVFFSLLGGLLFIPGFYYTRIAYYAYKGFKGFSFSNIPPV
        MMDSPFAVNNRPPFKEIALAVALLVFGTIGIVVGIVMASNRVGGDRAHGVFFSLLGGLLFIPGFYYTRIAYYAYKGFKGFSFSNIPPV
Subjt:  MMDSPFAVNNRPPFKEIALAVALLVFGTIGIVVGIVMASNRVGGDRAHGVFFSLLGGLLFIPGFYYTRIAYYAYKGFKGFSFSNIPPV

XP_038879685.1 transmembrane protein 230 [Benincasa hispida]2.1e-3690.91Show/hide
Query:  MMDSPFAVNNRPPFKEIALAVALLVFGTIGIVVGIVMASNRVGGDRAHGVFFSLLGGLLFIPGFYYTRIAYYAYKGFKGFSFSNIPPV
        MMDSPF VNNRPP KEIALAV+LLVFG IGIVVG  MASNRVGGDRAHGVFFSLLG LLFIPGFYYTRIAYYAYKG+KGFSFSNIPPV
Subjt:  MMDSPFAVNNRPPFKEIALAVALLVFGTIGIVVGIVMASNRVGGDRAHGVFFSLLGGLLFIPGFYYTRIAYYAYKGFKGFSFSNIPPV

TrEMBL top hitse value%identityAlignment
A0A0A0LUC1 Transmembrane protein 2307.8e-3789.77Show/hide
Query:  MMDSPFAVNNRPPFKEIALAVALLVFGTIGIVVGIVMASNRVGGDRAHGVFFSLLGGLLFIPGFYYTRIAYYAYKGFKGFSFSNIPPV
        MMDSPF VNNRPP KEIALAV+LLVFG IGI+VG  MASNRVGGDR HGVFFSLLGGLLFIPGFYYTRIAYYAYKG+KGFSFSNIPPV
Subjt:  MMDSPFAVNNRPPFKEIALAVALLVFGTIGIVVGIVMASNRVGGDRAHGVFFSLLGGLLFIPGFYYTRIAYYAYKGFKGFSFSNIPPV

A0A1S3BWL2 Transmembrane protein 2302.7e-3790.91Show/hide
Query:  MMDSPFAVNNRPPFKEIALAVALLVFGTIGIVVGIVMASNRVGGDRAHGVFFSLLGGLLFIPGFYYTRIAYYAYKGFKGFSFSNIPPV
        MMDSPF VNNRPP KEIALAV+LLVFG IGI+VG  MASNRVGGDRAHGVFFSLLGGLLFIPGFYYTRIAYYAYKG+KGFSFSNIPPV
Subjt:  MMDSPFAVNNRPPFKEIALAVALLVFGTIGIVVGIVMASNRVGGDRAHGVFFSLLGGLLFIPGFYYTRIAYYAYKGFKGFSFSNIPPV

A0A6J1C066 Transmembrane protein 2304.0e-41100Show/hide
Query:  MMDSPFAVNNRPPFKEIALAVALLVFGTIGIVVGIVMASNRVGGDRAHGVFFSLLGGLLFIPGFYYTRIAYYAYKGFKGFSFSNIPPV
        MMDSPFAVNNRPPFKEIALAVALLVFGTIGIVVGIVMASNRVGGDRAHGVFFSLLGGLLFIPGFYYTRIAYYAYKGFKGFSFSNIPPV
Subjt:  MMDSPFAVNNRPPFKEIALAVALLVFGTIGIVVGIVMASNRVGGDRAHGVFFSLLGGLLFIPGFYYTRIAYYAYKGFKGFSFSNIPPV

A0A6J1EUE9 Transmembrane protein 2301.3e-3689.77Show/hide
Query:  MMDSPFAVNNRPPFKEIALAVALLVFGTIGIVVGIVMASNRVGGDRAHGVFFSLLGGLLFIPGFYYTRIAYYAYKGFKGFSFSNIPPV
        MMDSPF VNNRPP KEIALAV+LL FG IGI+VGI MASNRVGGDRAHGVFFSLLG LLFIPGFYYTRIAYYAYKG+KGFSFSNIPPV
Subjt:  MMDSPFAVNNRPPFKEIALAVALLVFGTIGIVVGIVMASNRVGGDRAHGVFFSLLGGLLFIPGFYYTRIAYYAYKGFKGFSFSNIPPV

A0A6J1I4W8 Transmembrane protein 2301.3e-3689.77Show/hide
Query:  MMDSPFAVNNRPPFKEIALAVALLVFGTIGIVVGIVMASNRVGGDRAHGVFFSLLGGLLFIPGFYYTRIAYYAYKGFKGFSFSNIPPV
        MMDSPF VNNRPP KEIALAV+LL FG IGI+VGI MASNRVGGDRAHGVFFSLLG LLFIPGFYYTRIAYYAYKG+KGFSFSNIPPV
Subjt:  MMDSPFAVNNRPPFKEIALAVALLVFGTIGIVVGIVMASNRVGGDRAHGVFFSLLGGLLFIPGFYYTRIAYYAYKGFKGFSFSNIPPV

SwissProt top hitse value%identityAlignment
Q5BJP5 Transmembrane protein 2307.1e-1146.75Show/hide
Query:  PFKEIALAVALLVFGTIGIVVGIVMASNRV---GGDRAHGVFFSLLGGLLFIPGFYYTRIAYYAYKGFKGFSFSNIP
        P+K IALA  L + GT  I++G ++ S  +   G DRA  V   ++G L+F+PGFY+ RIAYYA KG++G+S+ +IP
Subjt:  PFKEIALAVALLVFGTIGIVVGIVMASNRV---GGDRAHGVFFSLLGGLLFIPGFYYTRIAYYAYKGFKGFSFSNIP

Q5R8X3 Transmembrane protein 2302.7e-1045.45Show/hide
Query:  PFKEIALAVALLVFGTIGIVVGIVMASNRV---GGDRAHGVFFSLLGGLLFIPGFYYTRIAYYAYKGFKGFSFSNIP
        P+K IALA  L + G   I++G ++ S  +   G DRA  V   ++G L+F+PGFY+ RIAYYA KG++G+S+ +IP
Subjt:  PFKEIALAVALLVFGTIGIVVGIVMASNRV---GGDRAHGVFFSLLGGLLFIPGFYYTRIAYYAYKGFKGFSFSNIP

Q5ZLH4 Transmembrane protein 2307.1e-1146.75Show/hide
Query:  PFKEIALAVALLVFGTIGIVVGIVMASNRV---GGDRAHGVFFSLLGGLLFIPGFYYTRIAYYAYKGFKGFSFSNIP
        P+K IALAV L + GT  I++G ++ +  +   G DRA  V   ++G L+F+PGFY+ RIAYYA KG++G+S+ +IP
Subjt:  PFKEIALAVALLVFGTIGIVVGIVMASNRV---GGDRAHGVFFSLLGGLLFIPGFYYTRIAYYAYKGFKGFSFSNIP

Q8CIB6 Transmembrane protein 2307.1e-1146.75Show/hide
Query:  PFKEIALAVALLVFGTIGIVVGIVMASNRV---GGDRAHGVFFSLLGGLLFIPGFYYTRIAYYAYKGFKGFSFSNIP
        P+K IALA  L + GT  I++G ++ S  +   G DRA  V   ++G L+F+PGFY+ RIAYYA KG++G+S+ +IP
Subjt:  PFKEIALAVALLVFGTIGIVVGIVMASNRV---GGDRAHGVFFSLLGGLLFIPGFYYTRIAYYAYKGFKGFSFSNIP

Q96A57 Transmembrane protein 2302.7e-1045.45Show/hide
Query:  PFKEIALAVALLVFGTIGIVVGIVMASNRV---GGDRAHGVFFSLLGGLLFIPGFYYTRIAYYAYKGFKGFSFSNIP
        P+K IALA  L + G   I++G ++ S  +   G DRA  V   ++G L+F+PGFY+ RIAYYA KG++G+S+ +IP
Subjt:  PFKEIALAVALLVFGTIGIVVGIVMASNRV---GGDRAHGVFFSLLGGLLFIPGFYYTRIAYYAYKGFKGFSFSNIP

Arabidopsis top hitse value%identityAlignment
AT2G19350.1 Eukaryotic protein of unknown function (DUF872)5.2e-3375Show/hide
Query:  MMDSPFAVNNRPPFKEIALAVALLVFGTIGIVVGIVMASNRVGGDRAHGVFFSLLGGLLFIPGFYYTRIAYYAYKGFKGFSFSNIPPV
        M+ + + V+NRPP KEI+LAV LLVFGT+GIV+G  MA NRVGGDR HG+FF +LG LLFIPGFYYTRIAYYAYKG+KGFSFSNIP V
Subjt:  MMDSPFAVNNRPPFKEIALAVALLVFGTIGIVVGIVMASNRVGGDRAHGVFFSLLGGLLFIPGFYYTRIAYYAYKGFKGFSFSNIPPV

AT3G29170.1 Eukaryotic protein of unknown function (DUF872)5.6e-1142.86Show/hide
Query:  NRPPFKEIALAVALLVFGTIGIVVGIVMASNRVGGDRAHGVFFSLLGGLLFIPGFYYTRIAYYAYKGFKGFSFSNIP
        +R P+K IALAV LL  G + +++   +    + GD + G    +LG L F+PGFY TRIAYY+++G +G+ F+ IP
Subjt:  NRPPFKEIALAVALLVFGTIGIVVGIVMASNRVGGDRAHGVFFSLLGGLLFIPGFYYTRIAYYAYKGFKGFSFSNIP

AT4G29850.1 Eukaryotic protein of unknown function (DUF872)2.5e-3579.55Show/hide
Query:  MMDSPFAVNNRPPFKEIALAVALLVFGTIGIVVGIVMASNRVGGDRAHGVFFSLLGGLLFIPGFYYTRIAYYAYKGFKGFSFSNIPPV
        M+++ + VNNRPP KEIALAVALLVFGT+GIV G  MA NRVGGDR HG+FF +LG LLFIPGFYYTRIAYYAYKG+KGFSFSNIPPV
Subjt:  MMDSPFAVNNRPPFKEIALAVALLVFGTIGIVVGIVMASNRVGGDRAHGVFFSLLGGLLFIPGFYYTRIAYYAYKGFKGFSFSNIPPV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGGATTCGCCGTTCGCGGTGAACAACCGGCCACCATTCAAGGAGATCGCTCTCGCCGTCGCTCTTCTCGTTTTCGGCACCATTGGAATCGTCGTTGGAATCGTCAT
GGCCAGTAATCGAGTCGGTGGTGATCGTGCTCACGGGGTGTTTTTCTCTTTGTTGGGAGGTCTCTTGTTTATTCCGGGTTTCTATTACACGCGGATTGCCTACTACGCTT
ATAAGGGTTTCAAAGGCTTCTCCTTCTCCAACATACCCCCTGTCTAA
mRNA sequenceShow/hide mRNA sequence
ATGATGGATTCGCCGTTCGCGGTGAACAACCGGCCACCATTCAAGGAGATCGCTCTCGCCGTCGCTCTTCTCGTTTTCGGCACCATTGGAATCGTCGTTGGAATCGTCAT
GGCCAGTAATCGAGTCGGTGGTGATCGTGCTCACGGGGTGTTTTTCTCTTTGTTGGGAGGTCTCTTGTTTATTCCGGGTTTCTATTACACGCGGATTGCCTACTACGCTT
ATAAGGGTTTCAAAGGCTTCTCCTTCTCCAACATACCCCCTGTCTAA
Protein sequenceShow/hide protein sequence
MMDSPFAVNNRPPFKEIALAVALLVFGTIGIVVGIVMASNRVGGDRAHGVFFSLLGGLLFIPGFYYTRIAYYAYKGFKGFSFSNIPPV