CuGenDBv2

Gene ID	MS024324
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Photosystem II CP43 reaction center protein
Genome location	scaffold30:3358110..3358319
RNA-Seq Expression	MS024324
Synteny	MS024324
Gene Ontology terms	GO:0009772 - photosynthetic electron transport in photosystem II (biological process) GO:0018298 - protein-chromophore linkage (biological process) GO:0009523 - photosystem II (cellular component) GO:0009535 - chloroplast thylakoid membrane (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0003676 - nucleic acid binding (molecular function) GO:0008270 - zinc ion binding (molecular function) GO:0010242 - oxygen evolving activity (molecular function) GO:0016168 - chlorophyll binding (molecular function) GO:0045156 - electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity (molecular function)
InterPro domains	IPR000484 - Photosynthetic reaction centre, L/M IPR000932 - Photosystem antenna protein-like IPR036001 - Photosystem antenna protein-like superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

XP_016648579.1 PREDICTED: LOW QUALITY PROTEIN: photosystem II CP43 reaction center protein-like [Prunus mume]

7.7e-26

89.86

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Query:  MAAQDQPHENLIFPEEVLPVEMLFNGTLALAGRDQETIDFAWWAGNAQLINLSGKLLGAHVAHARLIVF
        MAAQDQPHENLIFPEEVLP   LFNGTLALAGRDQET  FAWWAGNA+LINLSGKLLGAHVAHA LIVF
Subjt:  MAAQDQPHENLIFPEEVLPVEMLFNGTLALAGRDQETIDFAWWAGNAQLINLSGKLLGAHVAHARLIVF

XP_020111667.1 LOW QUALITY PROTEIN: uncharacterized protein LOC109726479 [Ananas comosus]

7.7e-26

89.86

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Query:  MAAQDQPHENLIFPEEVLPVEMLFNGTLALAGRDQETIDFAWWAGNAQLINLSGKLLGAHVAHARLIVF
        MAAQDQPHENLIFPEEVLP   LFNGTLALAGRDQET  FAWWAGNA+LINLSGKLLGAHVAHA LIVF
Subjt:  MAAQDQPHENLIFPEEVLPVEMLFNGTLALAGRDQETIDFAWWAGNAQLINLSGKLLGAHVAHARLIVF

XP_022975445.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111474790 [Cucurbita maxima]

7.7e-26

89.86

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Query:  MAAQDQPHENLIFPEEVLPVEMLFNGTLALAGRDQETIDFAWWAGNAQLINLSGKLLGAHVAHARLIVF
        MAAQDQPHENLIFPEEVLP   LFNGTLALAGRDQET  FAWWAGNA+LINLSGKLLGAHVAHA LIVF
Subjt:  MAAQDQPHENLIFPEEVLPVEMLFNGTLALAGRDQETIDFAWWAGNAQLINLSGKLLGAHVAHARLIVF

XP_033510060.1 LOW QUALITY PROTEIN: photosystem II CP43 reaction center protein-like [Nicotiana tomentosiformis]

7.7e-26

89.86

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Query:  MAAQDQPHENLIFPEEVLPVEMLFNGTLALAGRDQETIDFAWWAGNAQLINLSGKLLGAHVAHARLIVF
        MAAQDQPHENLIFPEEVLP   LFNGTLALAGRDQET  FAWWAGNA+LINLSGKLLGAHVAHA LIVF
Subjt:  MAAQDQPHENLIFPEEVLPVEMLFNGTLALAGRDQETIDFAWWAGNAQLINLSGKLLGAHVAHARLIVF

XP_039116659.1 LOW QUALITY PROTEIN: photosystem II CP43 reaction center protein-like [Dioscorea cayenensis subsp. rotundata]

7.7e-26

89.86

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Query:  MAAQDQPHENLIFPEEVLPVEMLFNGTLALAGRDQETIDFAWWAGNAQLINLSGKLLGAHVAHARLIVF
        MAAQDQPHENLIFPEEVLP   LFNGTLALAGRDQET  FAWWAGNA+LINLSGKLLGAHVAHA LIVF
Subjt:  MAAQDQPHENLIFPEEVLPVEMLFNGTLALAGRDQETIDFAWWAGNAQLINLSGKLLGAHVAHARLIVF

TrEMBL top hits

e value

%identity

Alignment

A0A5C7GP45 Photosystem II D2 protein

1.1e-25

86.96

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Query:  MAAQDQPHENLIFPEEVLPVEMLFNGTLALAGRDQETIDFAWWAGNAQLINLSGKLLGAHVAHARLIVF
        MAAQDQPHENLIFPEE LP E LFNGTLA+ GRDQET  FAWWAGNA+LINLSGKLLGAHVAHA LIVF
Subjt:  MAAQDQPHENLIFPEEVLPVEMLFNGTLALAGRDQETIDFAWWAGNAQLINLSGKLLGAHVAHARLIVF

A0A6J1DPW0 Photosystem II D2 protein

3.7e-26

89.86

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Query:  MAAQDQPHENLIFPEEVLPVEMLFNGTLALAGRDQETIDFAWWAGNAQLINLSGKLLGAHVAHARLIVF
        MAAQDQPHENLIFPEEVLP   LFNGTLALAGRDQET  FAWWAGNA+LINLSGKLLGAHVAHA LIVF
Subjt:  MAAQDQPHENLIFPEEVLPVEMLFNGTLALAGRDQETIDFAWWAGNAQLINLSGKLLGAHVAHARLIVF

A0A6J1IGQ7 Photosystem II D2 protein

3.7e-26

89.86

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Query:  MAAQDQPHENLIFPEEVLPVEMLFNGTLALAGRDQETIDFAWWAGNAQLINLSGKLLGAHVAHARLIVF
        MAAQDQPHENLIFPEEVLP   LFNGTLALAGRDQET  FAWWAGNA+LINLSGKLLGAHVAHA LIVF
Subjt:  MAAQDQPHENLIFPEEVLPVEMLFNGTLALAGRDQETIDFAWWAGNAQLINLSGKLLGAHVAHARLIVF

A0A6P5GV07 Photosystem II D2 protein

3.7e-26

89.86

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Query:  MAAQDQPHENLIFPEEVLPVEMLFNGTLALAGRDQETIDFAWWAGNAQLINLSGKLLGAHVAHARLIVF
        MAAQDQPHENLIFPEEVLP   LFNGTLALAGRDQET  FAWWAGNA+LINLSGKLLGAHVAHA LIVF
Subjt:  MAAQDQPHENLIFPEEVLPVEMLFNGTLALAGRDQETIDFAWWAGNAQLINLSGKLLGAHVAHARLIVF

A0A6P5MJ25 Photosystem II D2 protein

1.1e-25

88.41

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Query:  MAAQDQPHENLIFPEEVLPVEMLFNGTLALAGRDQETIDFAWWAGNAQLINLSGKLLGAHVAHARLIVF
        MAAQDQPHENLIFPEEVLP   LFNGTLAL GRDQET  FAWWAGNA+LINLSGKLLGAHVAHA LIVF
Subjt:  MAAQDQPHENLIFPEEVLPVEMLFNGTLALAGRDQETIDFAWWAGNAQLINLSGKLLGAHVAHARLIVF

SwissProt top hits

e value

%identity

Alignment

A9LYI1 Photosystem II CP43 reaction center protein

1.9e-19

90.2

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Query:  PVEMLFNGTLALAGRDQETIDFAWWAGNAQLINLSGKLLGAHVAHARLIVF
        PVE LFNGTLALAGRDQET  FAWWAGNA+LINLSGKLLGAHVAHA LIVF
Subjt:  PVEMLFNGTLALAGRDQETIDFAWWAGNAQLINLSGKLLGAHVAHARLIVF

B2Y1U6 Photosystem II CP43 reaction center protein

8.5e-20

77.05

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Query:  ENLIFPEEVLPVEMLFNGTLALAGRDQETIDFAWWAGNAQLINLSGKLLGAHVAHARLIVF
        + L  P    PVE LFNGTL LAGRDQET  FAWWAGNA+LINLSGKLLGAHVAHA LIVF
Subjt:  ENLIFPEEVLPVEMLFNGTLALAGRDQETIDFAWWAGNAQLINLSGKLLGAHVAHARLIVF

Q3V538 Photosystem II CP43 reaction center protein

1.9e-19

90.2

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Query:  PVEMLFNGTLALAGRDQETIDFAWWAGNAQLINLSGKLLGAHVAHARLIVF
        PVE LFNGTLALAGRDQET  FAWWAGNA+LINLSGKLLGAHVAHA LIVF
Subjt:  PVEMLFNGTLALAGRDQETIDFAWWAGNAQLINLSGKLLGAHVAHARLIVF

Q4FFN5 Photosystem II CP43 reaction center protein

2.9e-20

78.69

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Query:  ENLIFPEEVLPVEMLFNGTLALAGRDQETIDFAWWAGNAQLINLSGKLLGAHVAHARLIVF
        + L  P    PVE LFNGTLALAGRDQET  FAWWAGNA+LINLSGKLLGAHVAHA LIVF
Subjt:  ENLIFPEEVLPVEMLFNGTLALAGRDQETIDFAWWAGNAQLINLSGKLLGAHVAHARLIVF

Q70Y07 Photosystem II CP43 reaction center protein

1.9e-19

90.2

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Query:  PVEMLFNGTLALAGRDQETIDFAWWAGNAQLINLSGKLLGAHVAHARLIVF
        PVE LFNGTLALAGRDQET  FAWWAGNA+LINLSGKLLGAHVAHA LIVF
Subjt:  PVEMLFNGTLALAGRDQETIDFAWWAGNAQLINLSGKLLGAHVAHARLIVF

Arabidopsis top hits

e value

%identity

Alignment

ATCG00270.1 photosystem II reaction center protein D

8.0e-05

100

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Query:  MAAQDQPHENLIFPEEVLP
        MAAQDQPHENLIFPEEVLP
Subjt:  MAAQDQPHENLIFPEEVLP

ATCG00280.1 photosystem II reaction center protein C

8.8e-20

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Query:  VEMLFNGTLALAGRDQETIDFAWWAGNAQLINLSGKLLGAHVAHARLIVF
        VE LFNGTLALAGRDQET  FAWWAGNA+LINLSGKLLGAHVAHA LIVF
Subjt:  VEMLFNGTLALAGRDQETIDFAWWAGNAQLINLSGKLLGAHVAHARLIVF

Sequences

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CDS sequence

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ATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCTGTGGAAATGCTCTTTAATGGAACTTTAGCTTTAGCTGGTCGTGACCAAGAAAC
CATCGATTTCGCTTGGTGGGCCGGGAATGCCCAACTTATCAATTTATCTGGTAAACTACTGGGGGCTCATGTAGCCCATGCCAGATTAATCGTATTCTGA

mRNA sequence

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Protein sequence

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MAAQDQPHENLIFPEEVLPVEMLFNGTLALAGRDQETIDFAWWAGNAQLINLSGKLLGAHVAHARLIVF

MS024324 (gene) of Bitter gourd (TR) v1 genome